BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493000
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18593.1 | Symbols: | dual specificity protein phosphatase-... 848 0.0
> AT4G18593.1 | Symbols: | dual specificity protein phosphatase-related
| chr4:10237572-10238836 FORWARD LENGTH=650
Length=650
Score = 848 bits (459), Expect = 0.0
Identities = 594/656 (91%), Gaps = 21/656 (3%)
Strand=Plus/Plus
Query 1 ACTTAAACCGAACAGATTTGTCACGAAGAAGGTATCAGTGTAGGGTTAGTGA-C-T-CAT 57
||||||||||||||||||||||||||||||| ||||||||| | || | | | |||
Sbjct 1 ACTTAAACCGAACAGATTTGTCACGAAGAAGAAATCAGTGTA--G-CAGACACCATCCAT 57
Query 58 GTAGTG-G-ATTAGATAGAAGAGAAGCTATCTATGTCTGAGTTGCAAATGGAGGTAGAGG 115
|| | | |||||||||| || | ||||| |||| |||||||||||||||||||
Sbjct 58 -CCCTGAGCA-AAGATAGAAGA-AA---AGCTATGACTGATTTGCAAATGGAGGTAGAGG 111
Query 116 TAGAGACTAATTCTTCTTTACAAGAGTCTAC-CCCGAAGCCGCAAGTCATGTACAGATGT 174
|||| || ||||||||||| || |||||| | ||||||||||||||||||||||||||||
Sbjct 112 TAGATACCAATTCTTCTTTGCAGGAGTCT-CTCCCGAAGCCGCAAGTCATGTACAGATGT 170
Query 175 AAGAAATGTAGAAGGATAGTCGCTATTGAGGAAAACATAGTACCGCATGAACCGGGGAAG 234
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| || |||
Sbjct 171 AAGAAATGTAGAAGGATAGTTGCTATTGAGGAAAACATAGTCCCGCATGAACCAGGAAAG 230
Query 235 GGTGAAGAATGCTTTGCTTGGAAAAAGAGAAGCGGAAACTCTGAACCAGTGCAATGCTCT 294
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 231 GGTGAAGAATGCTTTGCTTGGAAAAAGAGAAGTGGAAACTCTGAACAAGTGCAATGCTCT 290
Query 295 TCGATCTTTGTCGAGCCTATGAAATGGATGCAGACAATACATGATGGATTAGTGGAAGAG 354
|| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 291 TCCATCTTTGTCGAGCCTATGAAATGGATGCAGACAATACATGATGGAATGGTGGAAGAG 350
Query 355 AAGCTTCTTTGTTTTGGATGTAACGGTCGGTTAGGTTATTTCAACTGGGCTGGGATGCAA 414
|||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 351 AAGCTTCTATGTTTTGGATGTAACGGGAGATTAGGTTATTTCAACTGGGCTGGGATGCAA 410
Query 415 TGTAGCTGCGGCGCATGGGTGAATCCGGCTTTCCAGCTTAATAAAAGCCGAATAGACGAG 474
|||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 411 TGTAGCTGTGGTGCATGGGTTAATCCGGCTTTTCAGCTTAATAAAAGCCGAATAGACGAG 470
Query 475 TGTAAATCCGAGCCAAACTCGAACCTGAATATGGAAACTGGATGAAAAAAGGAGAAGATG 534
|||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct 471 TGTAAATCCGAGCCAAACCCGAACCTGAATATGGAAACTTGATGAAAAA-GGAGAAGATG 529
Query 535 TAAACTCTTGGATAACTAAAGATTGATAATAAGATCAAATTGA-GCCGTATTGTATTGAC 593
||||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||||||
Sbjct 530 TAAACTCTTGGATAACTAAAGATTGATAAAAAGATCAAATTAAAGCCTTATTGTATTGAC 589
Query 594 TATCC-TAATGAGGTTTTTAGTTTCATGTTATTTAAATTCAAACATAAAATTAGTT 648
||||| ||||| ||||||||||||||| | |||||||||||||||| ||||||||
Sbjct 590 TATCCCTAATGGGGTTTTTAGTTTCAT-TG-TTTAAATTCAAACATAGAATTAGTT 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31295873581
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5