BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493002
Length=577
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18580.1 | Symbols: | unknown protein; Has 30201 Blast hits... 457 6e-128
> AT4G18580.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10234667-10236045
REVERSE LENGTH=676
Length=676
Score = 457 bits (247), Expect = 6e-128
Identities = 422/499 (85%), Gaps = 41/499 (8%)
Strand=Plus/Plus
Query 1 TTTCGCCACCGCTAATCTCTTGTTCTTCTCTGACTGAGTTTTGATAATTCGTCGACGATC 60
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 33 TTTCGCCACCGCTGATGTCTTGTTCTTCTCTTACTGAGTTTTGATAATTCGTCGACGATC 92
Query 61 AAATTTCTGGAGATCCGATTGACGATTTTCTCTTAATCTTCGAAAAGGTAAAATCATTTT 120
|||||||| ||||| ||| |||||||||||| ||||||| | |
Sbjct 93 AAATTTCTCAAGATCTGATAAACGATTTTCTCTGAATCTTC------G-------A---- 135
Query 121 TGAATCAGGACATGGCAACATTGGCACCAGGTCATGCTGTTTC-G---T--ATTCTTGGA 174
| | |||||||||||||||||||||||| |||||||||||| | | ||||| |||
Sbjct 136 T--A--AGGACATGGCAACATTGGCACCAGTTCATGCTGTTTCTGTTCTGCATTCTCGGA 191
Query 175 AGAGGGGAGGCTGCAATGGAGTTCCTTTACCATATTTGATCCGACCTCGTAGGATATTTC 234
|||||||||||||||| |||||||||||||||||| |||||||||||||||||| | |||
Sbjct 192 AGAGGGGAGGCTGCAACGGAGTTCCTTTACCATATCTGATCCGACCTCGTAGGAAAATTC 251
Query 235 CCCCTATTGATACGTTTCCCTTCTACAACGATTATTCATCTGACGATGA-TGATGAA-GC 292
||||| ||||||||||| ||||||||||||| | | ||| || || || |||| |
Sbjct 252 CCCCTGTTGATACGTTTGATTTCTACAACGATT-CTGA--TGATGA-GAGTGGTGAAGGT 307
Query 293 G--GCAGGTCATTCAGATGACGAATATGTAGTCGTTGACAAAGCTGAAGCTATTATGACC 350
| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 308 GATAAAGGTCATTCAGATGACGAATATGTAGTCGTAGACAAAGCTGAAGCTATTATGCCC 367
Query 351 AAT-TCTAAAACAGAGAAACCAGGAGCGATTCAAATGATGGAACTCTCAAAGGATACAGG 409
||| | ||||||||||||||||||||| ||||||||||||||||||||||| ||| || |
Sbjct 368 AATGT-TAAAACAGAGAAACCAGGAGCTATTCAAATGATGGAACTCTCAAAAGATGCA-G 425
Query 410 T-GCTGATGATGAGTGTGAAA-CCAAAGATGCTGGATACAGCAGTGATGAGTGGGTGGTT 467
| | ||||||||||| | ||| |||||||||||||||||||||||||||||||| | |||
Sbjct 426 TCGGTGATGATGAGTCT-AAAGCCAAAGATGCTGGATACAGCAGTGATGAGTGGTTTGTT 484
Query 468 GTGTAATTAGGAGGTGCAA 486
|||||| ||||||||||||
Sbjct 485 GTGTAACTAGGAGGTGCAA 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27729249144
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5