BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493003
Length=2256
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18570.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3301 0.0
> AT4G18570.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:10231218-10234693 FORWARD LENGTH=2309
Length=2309
Score = 3301 bits (1787), Expect = 0.0
Identities = 2152/2314 (93%), Gaps = 81/2314 (4%)
Strand=Plus/Plus
Query 1 AGTAGTCTCATCTTCTTCTTAATTCAAAGGCCCAAACTTTGAATCATCACTATCActctc 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 19 AGTAGTCTCATCTTCTTCTTAATCCAAAGGCCCAAACTTTGAATCATCACTATCA----C 74
Query 61 tctctctctctctctctttctctcAAGAACTGCACGGACAACGACATGCTTTTAATTTCC 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TCTCTCTCTCTCTCTCTATCTCTCAAGAACTGCACGGACAACGACATGCTTTTAATTTCC 134
Query 121 ATGCAAATCCCTCCTTTCTTCTCAACTAGTCATCATTTTTGAAAATCAATC--AAAA-T- 176
||||||||| ||||||||||||| | || ||||||||||||||||||| |||| |
Sbjct 135 ATGCAAATCTCTCCTTTCTTCTC-A--AG---TCATTTTTGAAAATCAATCAAAAAACTG 188
Query 177 ----TT--TGGAGCTTTTTATCATTCATCATCCATCAATGGTGGCTGGTAAGGTTCGTGT 230
|| |||||| |||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 189 AAACTTGGTGGAGC-TTTTATCATTCA-C-T-CATCAATGGTGGCTGGTAAGGTTCGTGT 244
Query 231 AACAATGGGTTTTCACAAATCACCTTCTACTaaaaaaaCCAAAGATATGccttctccttt 290
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 245 AACAATGGGTTTTCACAAATCACCTTCTACTAAAAAAACCAAAGACATGCCTTCTCCTTT 304
Query 291 acctcttcctcctcctcctcctcctcctcctcTTAAACCGCCTTCTTCCGGTTCTACTGC 350
||||| | ||||||||||||||||||||| |||||||| |||||||||||||| | ||
Sbjct 305 ACCTC-T--TCCTCCTCCTCCTCCTCCTCCACTTAAACCACCTTCTTCCGGTTC--C-GC 358
Query 351 TACTACTAAACCGCCGATTAATCCTAGTAAACCGGGTTTCACTCGCTCTTTCGGCGTTTA 410
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 359 TACTACTAAACCACCGATTAATCCTAGTAAACCGGGTTTCACTCGCTCTTTCGGTGTTTA 418
Query 411 TTTCCCACGCGCTTCCGCTCAAGTTCACGCTACTGCTGCTGCTGCTTCTCATAACGGCGT 470
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 419 TTTCCCACGCGCTTCCGCTCAAGTTCACGCCACTGCTGCTGCTGCTTCTCATAACGGCGT 478
Query 471 CGTCTCTGAGCTTCGTCGTCAAGTCGAGGAGCTTCGTGAGAGAGAAGCTCTGTTGAAAAC 530
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGTTTCTGAGCTTCGTCGTCAAGTCGAGGAGCTTCGTGAGAGAGAAGCTCTGTTGAAAAC 538
Query 531 AGAGAATCTCGAGGTTAAGCTTCTAAGAGAATCTGTTTCTGTTATTCCGTTACTTGAATC 590
||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 539 AGAGAATCTCGAGGTCAAGCTTCTTAGAGAATCTGTTTCTGTTATTCCGTTGCTTGAATC 598
Query 591 GCAGATCGCGGAGAAGAACGGCGAAATCGAGGAGTTTAGGAAAGAGACGGCGAGGTTAGC 650
||||||||| || ||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 599 GCAGATCGCTGATAAGAACGGCGAAATCGATGAGCTTAGGAAAGAGACGGCGAGATTAGC 658
Query 651 ggaggagaacgagagattacggcgag-a----a----agcgaggaaatgaggagggagag 701
|||||| ||||||||||||||||||| | | ||||||||||||||||| ||| |
Sbjct 659 GGAGGACAACGAGAGATTACGGCGAGAATTTGACCGGAGCGAGGAAATGAGGAGAGAGTG 718
Query 702 cgagaggagggagaaggaaatggaggcggaga-tgttggagCTTCGGAAACTTGTTTCGT 760
|||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 719 TGAGACGAGGGAGAAGGAAATGGAGGCGGAGATTGTT-GAGCTTCGGAAACTTGTTTCGT 777
Query 761 CGGAGAGTGACGATCACGCGCTCTCTGTTTCTCAGAGGTTTCAGGGTTTAATGGATGTGT 820
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CGGAGAGTGACGACCACGCGCTCTCTGTTTCTCAGAGGTTTCAGGGTTTAATGGATGTGT 837
Query 821 CGGCGAAATCGAATCTAATCAGAAGTTTAAAACGGGTCGGGTCGTTGAGGAATTTACCCG 880
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CGGCGAAATCTAACCTAATCAGAAGTTTAAAACGGGTCGGGTCGTTGAGGAATTTACCCG 897
Query 881 ACCCGATTCCGAATCAAGAG-A-A-CAACAAGGGCATTTCATCATCCGGAGACGCTGACG 937
| |||||| ||||||||||| | | ||||||| |||||||||||||||||||||| ||||
Sbjct 898 AACCGATTACGAATCAAGAGAATACCAACAAGAGCATTTCATCATCCGGAGACGCCGACG 957
Query 938 GTGACATTTATCGGAAAGACGAGATCGAGAGTTATGCACGGAGTAGTAACTCGGAGGAAC 997
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 958 GCGACATTTATCGGAAAGACGAGATCGAGAGTTATTCACGGAGTAGTAACTCGGAGGAAC 1017
Query 998 TCACTGAGTCATCATCTCTCTCCGCCGTCAGATCTAGAGTTCCGAGAGTCCCGAAACCAC 1057
||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1018 TCACTGAGTCATCGTCTCTCTCAACCGTCAGATCTAGAGTTCCGAGAGTCCCTAAACCAC 1077
Query 1058 CGCCTAAACGTTCTTTTTCATTAGGTGATTCCACGGAGAACAGAGCAGATCCGCCGCCGC 1117
|||| ||||| ||| |||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1078 CGCCGAAACGGTCTATTTCGTTAGGTGATTCCACGGAGAACAGAGCAGACCCGCCACCGC 1137
Query 1118 AGAAATCGATTCCG---CCTCCTCCTCCACCTCCGCCACCGCTTCTT---CAACCACCAC 1171
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1138 AGAAATCGATTCCGCCTCCTCCTCCTCCACCTCCGCCACCGCTTCTTCAACAACCACCAC 1197
Query 1172 CA----C--CTGTTTCTAAAGCTCCTCCTCCGCCTCCTCCACCGCCACCGCCGAAGAGTT 1225
|| | ||||||| |||||||||||||||||||||||||| || |||||||||||||
Sbjct 1198 CACCTCCGTCTGTTTCCAAAGCTCCTCCTCCGCCTCCTCCACCACCGCCGCCGAAGAGTT 1257
Query 1226 TAAGCATTGCGTCTGCGAAAGTAAGAAGAGTGCCGGAAGTTGTGGAGTTTTATCACTCTT 1285
||||||||||||| |||||||| |||||||| |||||||| || |||||||||||||| |
Sbjct 1258 TAAGCATTGCGTCGGCGAAAGTGAGAAGAGTACCGGAAGTGGTTGAGTTTTATCACTCGT 1317
Query 1286 TGATGCGAAGAGACTCCACAAACTCGAGAAGAGATTCCACCGGCGGTGGAAACGCCGCCG 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TGATGCGAAGAGACTCCACAAACTCGAGAAGAGATTCCACCGGCGGTGGAAACGCCGCCG 1377
Query 1346 CGGAGGCAATACTTGC-AAGCTCCAATGCCAGAGATATGATCGGAGAAATCGAAAACCGA 1404
|||| ||||||||||| || |||||| |||||||| ||||||||||||||||||||||||
Sbjct 1378 CGGAAGCAATACTTGCTAA-CTCCAACGCCAGAGACATGATCGGAGAAATCGAAAACCGA 1436
Query 1405 TCGGTTTATCTCCTCGCGATAAAAACCGACGTAGAAACGCAAGGAGATTTCATAAGATTC 1464
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1437 TCGGTTTATCTCCTCGCGATAAAAACCGACGTAGAAACGCAAGGAGATTTCATAAGGTTC 1496
Query 1465 TTGATCAAAGAAGTCGAAAACGCAGCGTTTTCAGATATTGAAGACGTCGTTCCTTTCGTC 1524
|||||||||||||||| |||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 1497 TTGATCAAAGAAGTCGGAAACGCTGCGTTTTCAGACATTGAAGACGTTGTTCCTTTCGTC 1556
Query 1525 AAATGGCTCGACGACGAACTCTCTTACCTGGTTGATGAGAGAGCAGTGTTGAAACATTTC 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 AAATGGCTCGACGACGAACTCTCTTACCTGGTTGATGAGAGAGCAGTGTTGAAACATTTC 1616
Query 1585 GAATGGCCGGAGCAAAAAGCTGATGCGTTACGTGAAGCAGCGTTTTGTTATTTCGATCTG 1644
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1617 GAGTGGCCGGAGCAAAAAGCTGATGCTTTACGTGAAGCAGCGTTTTGTTATTTCGATCTA 1676
Query 1645 AAGAAACTCATATCAGAAGCTTCTCGTTTCCGGGAAGATCCTCGTCAATCTTCTAGCTCT 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 AAGAAACTCATATCAGAAGCTTCTCGTTTCCGGGAAGATCCTCGTCAATCTTCTAGCTCT 1736
Query 1705 GCTCTTaaaaaaaTGCAAGCTTTATTTGAAAAGTTAGAGCATGGTGTTTATAGTCTGTCG 1764
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1737 GCTCTTAAGAAAATGCAAGCTTTGTTTGAAAAGTTAGAGCATGGTGTTTATAGTCTTTCG 1796
Query 1765 AGGATGAAAGAATCGGCGGCCACAAAATTCAAGAGTTTCCAGATTCCGGTTGATTGGATG 1824
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1797 AGGATGAGAGAATCGGCGGCAACAAAATTCAAGAGTTTCCAGATTCCGGTTGATTGGATG 1856
Query 1825 CTCGAAACCGGTATAACCAGCCAGATTAAACTGGCATCAGTGAAACTTGCGATGAAGTAT 1884
|||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1857 CTCGAAACCGGTATTACTAGCCAGATTAAACTGGCATCCGTGAAACTAGCGATGAAGTAT 1916
Query 1885 ATGAAGAGAGTATCCGCAGAGCTTGAGGCTATTGAAGGTGGTGGCCCTGAAGAGGAAGAG 1944
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1917 ATGAAGAGAGTATCCGCAGAGCTAGAGGCTATTGAAGGTGGTGGCCCTGAAGAGGAAGAG 1976
Query 1945 CTAATTGTACAAGGCGTTCGATTCGCATTCCGTGTTCATCAGTTTGCGGGAGGATTTGAT 2004
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1977 CTAATTGTCCAAGGTGTTCGATTCGCATTCCGTGTTCATCAGTTTGCCGGAGGATTTGAT 2036
Query 2005 GCAGAGACAATGAAGGCATTCCAAGAGCTAAGAGATAAAGCAAGATCATGTCATGTTCAG 2064
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2037 GCAGAAACAATGAAGGCATTTGAAGAGCTAAGAGATAAAGCAAGATCATGTCATGTTCAG 2096
Query 2065 TGTCAAAGCCAAACACATCAACATAAACTTTGTTTTCGATCTACCCCTTGTTAAAGAAGC 2124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 TGTCAAAGCCAAACACATCAACATAAACTTTGTTTTCGATCTACCCCTTGTTAAAGAAGC 2156
Query 2125 AATCTTAGCTTC-T-T--------------GTTGTCATTTTCTCTATTTAATTTGttttt 2168
|||||||||||| | | |||||||||||||| |||||||||||||||
Sbjct 2157 AATCTTAGCTTCATATATAATCCACCTCTTGTTGTCATTTTCTCGATTTAATTTGTTTTT 2216
Query 2169 tttttACT--CGTCTTAAAAGACCTATAACTCTTGTGAATATACGTTCTC--T--TCTTG 2222
|| || || |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 2217 TTGTT-CTTTCGTCTTAAAAGACCTATAACTCTTGTGAATATACGTTCTCGATCGTCTTG 2275
Query 2223 CTGAAAAAGGATAAAAACAGTTGATATTCAAAGG 2256
|||||||||||| |||||||||||||||||||||
Sbjct 2276 CTGAAAAAGGATTAAAACAGTTGATATTCAAAGG 2309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111947215350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5