BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493004
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18550.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1977 0.0
> AT4G18550.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:10224921-10226862 REVERSE LENGTH=1345
Length=1345
Score = 1977 bits (1070), Expect = 0.0
Identities = 1228/1305 (94%), Gaps = 7/1305 (1%)
Strand=Plus/Plus
Query 1 ATgaagaggaagaagaaaga-ga--aggaggagaagTTGATAGTGTCTAGAGAATTTGCA 57
|||||||||||||||||||| || |||||||||||||||||||| |||||||||| ||
Sbjct 1 ATGAAGAGGAAGAAGAAAGAGGAGGAGGAGGAGAAGTTGATAGTGACTAGAGAATTCGCG 60
Query 58 AAAAGATGGAGAGATCTGAGCGGTCAAAACCATTGGAAAGGGATGTTACAGCCGTTGGAT 117
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGAGATGGCGAGATCTGAGCGGTCAAAACCATTGGAAAGGGATGTTACAGCCGTTGGAT 120
Query 118 CAAGATCTCCGGGAATATATCATACATTACGGCGAGATGGCTCAGGCTGGTTACGATACT 177
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 121 CAAGATCTCCGGGAATATATCATACATTATGGTGAGATGGCTCAGGCTGGTTACGATACT 180
Query 178 TTCAATATCAACACCGACTCTCAGTTCGCCGGCGCTAGCATCTACTCTAGAAAAGACTTC 237
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TTCAATATCAACACCGAATCTCAGTTCGCCGGTGCTAGCATCTACTCTAGAAAAGACTTC 240
Query 238 TTCGCCAAGGTTGGTTTAGAGAAAGCACATCCGTACACAAAGTACAAAGTGACCAAGTTT 297
|||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||
Sbjct 241 TTCGCCAAGGTTGGTTTAGAGATAGCACACCCGTACACAAAGTACAAAGTGACGAAGTTT 300
Query 298 CTATACGCAACATCCGAGATCCACGTGCCTGAATCATTCCTATTGTTCCCAGTTTCACGT 357
||||||| |||||||| |||||||||||||| |||||| ||||||||||| ||||||||
Sbjct 301 ATATACGCGACATCCGATATCCACGTGCCTGAGTCATTCTTATTGTTCCCAATTTCACGT 360
Query 358 GAGGGATGGACAAAGGAGTCGAACTGGATGGGTTACGTGGCAGTAACAGACGACCAAGGC 417
||||||||| ||||||| || || ||||||||||||||||| ||||||||||||||||||
Sbjct 361 GAGGGATGGTCAAAGGAATCAAATTGGATGGGTTACGTGGCGGTAACAGACGACCAAGGC 420
Query 418 ACGGCGCTTCTTGGTCGGAGAGATATCGTGGTTGCGTGGAGAGGCTCAGTACAACCGCTT 477
||||| ||||||||||||||||||||||||||| | |||||||||||||| ||||| |||
Sbjct 421 ACGGCACTTCTTGGTCGGAGAGATATCGTGGTTTCTTGGAGAGGCTCAGTGCAACCACTT 480
Query 478 GAATGGGTC-AACGACTTCGAGTTCGGTTTAGTCAACGCCaaaaaaaTCTTCGGTGAGAA 536
||||||||| || ||||||||||| |||||||||||||||| ||||||||||||||| ||
Sbjct 481 GAATGGGTCGAA-GACTTCGAGTTTGGTTTAGTCAACGCCATAAAAATCTTCGGTGA-AA 538
Query 537 -AAACGATCAAGTGCAAATTCATCAAGGTTGGTATTCAATCTACATGTCTCAAGATGAAC 595
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GAAACGATCAAGTACAAATTCATCAAGGTTGGTATTCAATCTACATGTCTCAAGATGAAC 598
Query 596 GATCACCTTTTACTAAGGCCAATGCTCGTGACCAGGTATTGCGAGAGCTTGGGAGATTGT 655
||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||
Sbjct 599 GATCACCTTTTACTAAGACCAATGCTCGTGACCAGGTATTGCGAGAGGTTGGAAGATTGT 658
Query 656 TGGAGAAGTATAAGGACGAAGAAGTTAGTATAACTATATGTGGTCATAGTCTTGGAGCTG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGGAGAAGTATAAGGACGAAGAAGTTAGTATAACTATATGTGGTCATAGTCTTGGAGCTG 718
Query 716 CACTCGCAACGCTGAATGCTACGGATATTGTGGCTAATGGTTATAACCGACCAAAGAGCC 775
||||||| ||||| | ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 719 CACTCGCGACGCTTAGTGCCACTGATATTGTGGCTAATGGTTATAACCGACCAAAGAGCC 778
Query 776 GTCCTGACAAGTCTTGTCCAGTTACGGCCTTTGTCTTTGCCAGTCCTCGTGTTGGGGATT 835
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 779 GTCCTGACAAGTCTTGTCCTGTTACTGCCTTTGTCTTTGCTAGTCCTCGTGTTGGGGATT 838
Query 836 CAGACTTTAAGAAACTCTTGTCCATATTGGAAGATATGCGAGTGTTACGGACAAGGAATC 895
||||||||| ||||||||| ||| |||||||||||| ||||||||||||||||||||||
Sbjct 839 CAGACTTTAGGAAACTCTTTTCCGGATTGGAAGATATCCGAGTGTTACGGACAAGGAATC 898
Query 896 TACCGGACGTAATTCCAATCTATCCACCGATAGGTTACTCCGAGGTGGGAGACGAGCTTC 955
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 899 TACCGGACGTAATTCCGATCTATCCACCGATAGGTTACTCCGAGGTAGGAGATGAGTTTC 958
Query 956 CAATAGACACAAGAAAGTCACAATACATGAAATCTCCTGGAAACCTCGCGACCTTTCACT 1015
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 959 CAATAGACACAAGAAAGTCACCATACATGAAATCTCCTGGAAACCTCGCAACCTTTCACT 1018
Query 1016 GCCTAGAGGCTTACTTGCACGGCGTTGCAGGGACTCAAGGAACGGCCAAAGCTGACTTAT 1075
|| |||||| ||||||||| |||||||| ||||||||||||||| ||||||||||||||
Sbjct 1019 GCTTAGAGGGTTACTTGCATGGCGTTGCCGGGACTCAAGGAACGAACAAAGCTGACTTAT 1078
Query 1076 TCAGACTCGATGTGAAAAGAGCCATCGGATTGGTCAACAAATCAGTCGATGGCTTAAAAG 1135
|||||||||||||| |||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 1079 TCAGACTCGATGTGGAAAGAGCCATCGGATTGGTCAATAAATCAGTGGATGGGTTAAAAG 1138
Query 1136 ACGAGTGTATGGTCCCAGGTAAATGGAGGGTTCTTAAAAACAAAGGTATGGTCCAACAAG 1195
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1139 ACGAGTGTATGGTCCCAGGGAAATGGAGGGTTCTTAAAAACAAAGGTATGGCCCAACAAG 1198
Query 1196 ACGATGGGTCTTGGAAGTTATTGGACCATGAGATTGATGATAATGAAGatttggatttct 1255
||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ACGATGGATCTTGGGAGTTAGTGGACCATGAGATTGATGATAATGAAGATTTGGATTTCT 1258
Query 1256 gattttttggtcattttttctttGTGAAGTGTTGATGTTTGGAAA 1300
||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1259 GATTTCTTGGTCATTTTTTCTTTGTCAAGTGTTGATGTTTGGAAA 1303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65110106865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5