BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493005
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18540.1 | Symbols: | unknown protein; Has 209 Blast hits t... 1173 0.0
> AT4G18540.1 | Symbols: | unknown protein; Has 209 Blast hits
to 205 proteins in 54 species: Archae - 0; Bacteria - 17; Metazoa
- 2; Fungi - 150; Plants - 40; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:10221203-10223028 REVERSE
LENGTH=1563
Length=1563
Score = 1173 bits (635), Expect = 0.0
Identities = 781/852 (92%), Gaps = 7/852 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAACGCTTCGACCGTGAGATTCTCTAGCTGTCGAGGAGTTGCGTTTGAGATTAAA 60
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAAACGCTTCGACTGTGAGATTTTCTAGCTGTCGAGGAGTTGCGTTTGAGATTAAA 60
Query 61 CCTCATGCAAACCCTTTTGCTGTCGTTACAACTGATCAAAACCTCTACGCAGACGCTGAA 120
||| |||| |||||||| || || |||||||||||||| |||| | ||| | ||||||||
Sbjct 61 CCTAATGCTAACCCTTTCGCAGTTGTTACAACTGATCAGAACCGCAACGTAAACGCTGAA 120
Query 121 CGCGAAGGAACGAGCAGCAGGTTTCGACTTCCATGGGATTTCATGAGAAACGCCTCAAAA 180
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CGCGAGGGAACGAGCAGCAGATTTCGACTTCCATGGGATTTCATGAGAAATGCCTCAAAA 180
Query 181 GTTTTCCCTTCATCGATTCAACACTCCATGAGCCGAGCAAGCAGTCATTTCTGCGATTTG 240
||| |||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||
Sbjct 181 GTTGTCCCTTCATCGATTGAACACTCCATGAGCCGAGCCAGCAGCCATTTCTGCGATTTG 240
Query 241 GACT-CCGAC-A--ACGAGGAAGAAGAAGAAAAAGATGATATTTTCTACTTAGAAGAAGG 296
|| | ||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GA-TCCCGACAATGACGATGAAGAAGAAGAAAAAGATGATATTTTCTACTTAGAAGAAGG 299
Query 297 TGGGATCAAAGAAGGAAACGAAGAACACAGTGAGACGGACGAGAAGGCAATCCTTGCTTC 356
||||||||| |||||||| |||||||||| ||||||||| || || ||||| ||||||||
Sbjct 300 TGGGATCAAGGAAGGAAATGAAGAACACAATGAGACGGAGGAAAAAGCAATGCTTGCTTC 359
Query 357 TTCCGCAAGCAAACACAGTGAGAAACCGCAGCAACCGCCGGTTCCAAAGAAACGCGCTTC 416
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||
Sbjct 360 TTCCGCAAGCAAACACAGTGAGAAACCGCAGCAACCCCCGATTCCAAAGAAACGCCCTTC 419
Query 417 AAGACTATCCATCATACTTCTTGATCAAGGATTGTTCACCGTTTACAAACGTCTCTTCGT 476
||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||
Sbjct 420 AAGACTATCAATCATACTTCTTGATCAAGGACTGTTCACCGTTTACAAACATCTCTTTGT 479
Query 477 TCTTTCATTGTTTCTGAACGTCCTAGCCCTCGTTCTCGCGGCCACGGGAAATTTTGCTTA 536
|||||||||| ||| ||||||||||| || |||||||||||||| |||||||| |||||
Sbjct 480 CCTTTCATTGTCTCTAAACGTCCTAGCTCTGGTTCTCGCGGCCACCGGAAATTTCGCTTA 539
Query 537 CGCTAGAAACAGAGCAGCTCTGTTTTCAATCGCCAACATTCTTGCCCTAACTCTCTGCAG 596
||||||||||||||||||||| |||||||||||||| || |||||||||| |||||||||
Sbjct 540 CGCTAGAAACAGAGCAGCTCTATTTTCAATCGCCAATATCCTTGCCCTAATTCTCTGCAG 599
Query 597 AAGCGAAGCCTTCTTGAGACTCGTTTTCTACCTAACCGTAAACCTCCTTGGAAACTCCTT 656
|||||||||||||||||||||||||||||||||||| ||||| || || ||| |||||||
Sbjct 600 AAGCGAAGCCTTCTTGAGACTCGTTTTCTACCTAACAGTAAAGCTTCTCGGACACTCCTT 659
Query 657 TGT-CCCTCTCCGCATCAAAATCGCGGTCACATCGCTCTTACAAAGCCTCGGTGGTATTC 715
||| ||| |||||||| |||||||| |||||| | ||||||||||||||||||||||| |
Sbjct 660 TGTACCC-CTCCGCATAAAAATCGCTGTCACAGCTCTCTTACAAAGCCTCGGTGGTATCC 718
Query 716 ACAGTGGCTGCGGCATTTCCTCGATAGCTTGGCTCATCTACGCATTGGTTCTTACTCTTA 775
|||| |||||||| |||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 719 ACAGCGGCTGCGGTGTTTCCTCGGTAGCTTGGCTCATCTACGCATTGGTTCTCACTCTTA 778
Query 776 ACGACAGAGACAACACTTCAACAGCCATCATAGCGGTTGCGTCCACGATTCTCTCTCTTC 835
| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 779 AAGACAGAGACAACACTTCAACAGCGATCATAGCAGTTGCGTCCACGATTCTCTCTCTCC 838
Query 836 TCTGCCTCACTT 847
||||||||||||
Sbjct 839 TCTGCCTCACTT 850
Score = 1002 bits (542), Expect = 0.0
Identities = 669/728 (92%), Gaps = 18/728 (2%)
Strand=Plus/Plus
Query 881 GCCTTGTTTGGGCGTTTATAATTCTGACCATTTCGTACGATCCAAAATCAAGATCATACA 940
||||||||||||||||| ||||||| || |||| ||||| |||||||||||||| ||||
Sbjct 851 GCCTTGTTTGGGCGTTTGTAATTCTAACGGTTTCCTACGACCCAAAATCAAGATCTTACA 910
Query 941 CAGATAATCTTGGCTCGAAACTGATCAAAACGCAAGAATTTTGGTTTACGTTAACT-ATC 999
||||| |||| || ||||||||||||||||| |||||||||||||||||| | | |||
Sbjct 911 CAGATGATCTCGGGTCGAAACTGATCAAAACACAAGAATTTTGGTTTACGCT-GGTGATC 969
Query 1000 AC-AGCGGCGATTC-TGCTCCCTTGGTTAACTGTGAGACGAGTTCCGGTTGACGTCTCAT 1057
|| | | || | || |||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 970 ACAATC-GCTA-TCTTGCTCCCTTGGTTAACCGTGAGACGTGTTCCTGTTGACGTCTCAT 1027
Query 1058 CTCTCTCGGGCCACGCGTCGCTGATCAAATTCAGAGGAGGCGTGAAATCAGGGATCTTGG 1117
|||||||||||||||| ||| |||| ||||||||||||||| ||||||||||||||||||
Sbjct 1028 CTCTCTCGGGCCACGCATCGTTGATAAAATTCAGAGGAGGCCTGAAATCAGGGATCTTGG 1087
Query 1118 GTCGGATCAGTCCATCGCCATTATCGGAATGGCATGCTTTTGGGATAATCTCCGATGGGA 1177
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1088 GTCGGATCAGTCCATCGCCGTTATCGGAATGGCATGCTTTTGGAATAATCTCCGATGGGA 1147
Query 1178 AGACATCGCACATGATGTTGGCTGGTGCTGTCGGCGACTTCACCAAGTCCTTAGTCTCAA 1237
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 1148 AGACATCGCACATGATGTTGGCTGGTGCTGTCGGCGACTTTACAAAGTCTTTAGTCTCAA 1207
Query 1238 AACCTCCAACGCATTTATGGGTCCGTACAGTTCACTTTGCCGGCTTACCCTATCTCGTTA 1297
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 1208 AACCTCCAACGCATTTATGGGTCCGTACGGTTCACTTCGCTGGCTTACCCTATCTCGTTA 1267
Query 1298 ACTTGTATGACAAGGTATTACTTGTGGCCACTGGTTCGGGGATTTGCGTATTTTTATCGT 1357
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1268 ACTTGTATGACAAGGTATTACTTGTG-CCACGGGTTCGGGGATTTGCGTATTTTTATCGT 1326
Query 1358 TTCTAATGCAACAGAGTAAGGCTGAGATTGTGAATAGGATTAAAGATTATCCTCATCAAG 1417
|||| ||||||| ||||||||||||| | | | | |||||||||||||||||||
Sbjct 1327 TTCTTATGCAACCGAGTAAGGCTGAG---G--A-T----T-AAAGATTATCCTCATCAAG 1375
Query 1418 ACAGGATCATAGTTCACGACACTGCGATTCTAGGACGACCTAATGTGTCGGAAATGACCG 1477
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
Sbjct 1376 ACAGGATCATAGTTCACGATACTGCGATTCTAGGACGACCTAATGTGTCGAAAATGAGTG 1435
Query 1478 TGGAAGCTTCCAAGAAGTTTGGTGCTCAAGTTGTGATTGTTACAAGCAATCCTGAAGGAA 1537
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1436 TGGAAGCTTCCAAGAAGTTTGGAGCTCAAGTCGTGATTGTTACAAGCAATCCTGAAGGAA 1495
Query 1538 GTCGTGATGTTGTTAATGCTTGTAAGGCTTCTGGTGTTCCTGCTTTTGGTCCTATTTGGG 1597
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1496 GTCGTGATGTTGTTAATGCTTGTAAAGCTTCTGGTGTTCCTGCTTTTGGTCCTATTTGGG 1555
Query 1598 ATTCTTAA 1605
||||||||
Sbjct 1556 ATTCTTAA 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5