BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493008

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G18510.1 | Symbols: CLE2 | CLAVATA3/ESR-related 2 | chr4:102...   656    0.0  


> AT4G18510.1 | Symbols: CLE2 | CLAVATA3/ESR-related 2 | chr4:10211869-10212421 
FORWARD LENGTH=553
Length=553

 Score =  656 bits (355),  Expect = 0.0
 Identities = 482/539 (89%), Gaps = 25/539 (5%)
 Strand=Plus/Plus

Query  1    GCAACGAG-AAAACCTGTCCTTGGTGACAACTCATGCTTGCACTCAAGCCCTAAGCTAGC  59
            |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1    GCAACGAGAAAAACC-GTCCTTGGTGACAACTCATGCTTGCACTCAAGCCTTAAGCTAGC  59

Query  60   TAAACCTATCT-G-TCACTACTAGAAACCATTCAAATAAAACTCTATAAATAGAAACCCT  117
            ||||||||||| |  |||||||||  |  |||||||||||||||||||||||||||||||
Sbjct  60   TAAACCTATCTCGCGCACTACTAG--A--ATTCAAATAAAACTCTATAAATAGAAACCCT  115

Query  118  CATGAGATCTCTTCTTTTCTCATATACACTCATACACACCACGTGAACAATCTCTCTCTC  177
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  116  CATGAGATCTCTTCTTTCCTCATATACACTCATACACACCACGTGAACAATCTATCTCTC  175

Query  178  TTTCTATTACCTTTCTATAT-TA--GAAACTAATTAATTGTAAT-TGTAATGGCTAAGTT  233
            |||||||| | ||||||||| ||  ||||||||||||||||| | |||||||||||||||
Sbjct  176  TTTCTATTGCTTTTCTATATATACAGAAACTAATTAATTGTA-TCTGTAATGGCTAAGTT  234

Query  234  AAGCTTCAGTTTATGCTTCTTGTTGGTTCTTCTGTTATCCTCAATCGCTGCTGGAAGTCG  293
            |||||||| ||| |||||||||||| |||||||||||||||||||||| |||||||| ||
Sbjct  235  AAGCTTCACTTTCTGCTTCTTGTTGTTTCTTCTGTTATCCTCAATCGCCGCTGGAAGCCG  294

Query  294  CCCTCTT-AGGCGGGCTCCAGTCGGGGTGAAGGTGAGAGGCCTAAGCCCTTCTATTGAGG  352
            ||||||| ||| ||||||  ||||||||||||||||||||||||||||||||||| ||||
Sbjct  295  CCCTCTTGAGG-GGGCTCGGGTCGGGGTGAAGGTGAGAGGCCTAAGCCCTTCTATCGAGG  353

Query  353  CTACAAGTCCGACTGCATCTGATGATCAAGCTGCGGGTAGCAGCAGCAGCCATGGGAAAT  412
            |||| |||||||||| |   |||||||||||||||||||||  ||       ||||||||
Sbjct  354  CTACGAGTCCGACTGTAGAGGATGATCAAGCTGCGGGTAGC--CA-------TGGGAAAT  404

Query  413  CGCCAGAACGGTTGAGCCCTGGAGGACCCGACCCGCAACATCATTAGATATTTAGTGTTT  472
            | ||||| ||||| ||||| |||||||||||||| |||||||| ||| ||||| ||||||
Sbjct  405  CTCCAGAGCGGTTAAGCCCAGGAGGACCCGACCCACAACATCACTAGTTATTTTGTGTTT  464

Query  473  CCTCAATTTCTTCGAGATGATTATTACTTATCAATAATTTGGTTGCAATGAATCTGTTT  531
              ||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct  465  T-TCAATTTCTTCGACATGTTTATTACTTATCAATAATTTGGTTGCAACGAAGCTGTTT  522



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25418478382


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5