BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493009

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G18501.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   580    3e-165


> AT4G18501.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:10209174-10209733 
FORWARD LENGTH=560
Length=560

 Score =  580 bits (314),  Expect = 3e-165
 Identities = 446/504 (88%), Gaps = 31/504 (6%)
 Strand=Plus/Plus

Query  1    TTTCCAAATCCGGTTCAAAGTCCCTCTTATTCACACACTTCATATACAt-ttcctcactt  59
            |||||||||| | ||||||||||||| |||||||||||||||||||||| || |||| ||
Sbjct  1    TTTCCAAATCTGCTTCAAAGTCCCTCCTATTCACACACTTCATATACATCTT-CTCAGTT  59

Query  60   cctccttccatcctcaaat-c---catctct--ctctct-t-tct-tc-c-tt-t--ctt  105
            ||||||||||||||||||| |   |||||||  |||||| | ||| || | || |  |||
Sbjct  60   CCTCCTTCCATCCTCAAATCCATACATCTCTCCCTCTCTCTCTCTCTCTCTTTCTCCCTT  119

Query  106  tctctA-CTA---CATCAATGGCGATTCTATATTCAAATCCTCAAGACGACAACAAAGAG  161
            |||||| |||   ||||||||||| ||||| ||||||| ||||||||  |||||||||||
Sbjct  120  TCTCTATCTACTCCATCAATGGCGGTTCTAGATTCAAAGCCTCAAGAAAACAACAAAGAG  179

Query  162  AATATCTCACTCTCACCCTCAGAGATGGTCACCATTTCTGTCAAACCTCTAGATTCTTCA  221
             | |  |   |||||||||||||||||||||| ||| |||||||| |||| ||||| |||
Sbjct  180  -A-A--T--GTCTCACCCTCAGAGATGGTCACGATTGCTGTCAAATCTCTGGATTCCTCA  233

Query  222  TCCATTGATAAAGACAAAACCCAAATCAGAATAAGAAGAAAAAGATCTAGGAAGCCTCTT  281
            ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  234  TCCATTGATAAAGGCAAAACCCAAATCAGAATAAGAAGAAAAAAATCTAGGAAGCCTCTT  293

Query  282  CAAGACATCACCAACCTCTTTGTCTCGTCATCACCATTGTCTTCTTCGTTTCTGATTCGT  341
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct  294  CAAGACATCACCAACCTCTTTGTCTCGTCATCACCATTGTCCTCTTCGTTTCTGATCCGT  353

Query  342  CACATTCCCTCTTCTCCATCTCTATCACTTGATCCCAAATGCATGAAGAGAAGATCTGGT  401
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  354  CACATTCCCTCTTCTTCATCTCTATCACTTGATCCCAAATGCATGAAGAGAAGATCTTGT  413

Query  402  CTTTCCCTCAAGACTGCTACTTCTTCTTCTACCTTCTCTTGTAGAAATTTCAGATGAttt  461
             ||||||||||| |||||||||||||    ||||||||||||||||||||||||||||||
Sbjct  414  GTTTCCCTCAAGCCTGCTACTTCTTCA---ACCTTCTCTTGTAGAAATTTCAGATGATTT  470

Query  462  tttt-tCTTTGGAAACCGTTGTTT  484
            || | | ||||||||  |||||||
Sbjct  471  TTATAT-TTTGGAAAATGTTGTTT  493



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23057473473


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5