BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493010
Length=2323
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18490.1 | Symbols: | unknown protein; Has 30201 Blast hits... 2905 0.0
> AT4G18490.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10203598-10208197
FORWARD LENGTH=2454
Length=2454
Score = 2905 bits (1573), Expect = 0.0
Identities = 1786/1887 (95%), Gaps = 21/1887 (1%)
Strand=Plus/Plus
Query 1 AAGTCAAATAATTCGCAGCCCAGCTAA-TTCAAAATCTTCCCCCTTCGAATTCCGTCGGC 59
||||||||| ||||| ||||||||||| |||||||||| |||||||||| ||||||||||
Sbjct 1 AAGTCAAATCATTCGGAGCCCAGCTAATTTCAAAATCTCCCCCCTTCGAGTTCCGTCGGC 60
Query 60 GATTTTTTCTCTCCGGTGCCGTCGTCTTGTTGCCGTTGAACGTTTATCGTTACCGCCTAC 119
|| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 GA--TTTTCTCTCCGGTGTCGTCGTCTTGTTGCCGTTGAACGTTTATCGTTAGCGCCTAC 118
Query 120 CGCAGATACAACTGTC-AAGCGATTCAATCGCTGGTTTTCAAGGGTGAGACTGAACAGAT 178
|| ||||||||| | |||||||||||||| ||||||||||| |||| |||||||||||
Sbjct 119 TACATATACAACTG-CAAAGCGATTCAATCGTTGGTTTTCAAGAGTGATACTGAACAGAT 177
Query 179 TTTGCCATGTCTGCACCTGCTAAAAGAAGTTCTACAGATACTCAGGAGAAAGATCTAA-- 236
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 178 ATTGCCATGTCTGCACCTGCTAAAAGAAGTTCTACAGATACTCAGGACAAAGATCTAATG 237
Query 237 -T-GCT-C-GATAAAGACATGGAAAACGATACATGGAACTTTAAGTCAATGACAGATGAT 292
| ||| | ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 238 CTCGCTGCAGATAAAGACATGGAAAAGGATACATGGAACTTCAAGTCAATGACAGATGAT 297
Query 293 GATCCAATGGATTTTGGCTTTGACTCACCAGCAAAAACTAAGAAGAATGCCTTCAAGCTG 352
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||
Sbjct 298 GATCCAATGGATTTTGGCTTTGGCTCACCAGCAAAAAATAAGAAGAATGCCTTCAAGTTG 357
Query 353 GATATGGGTTTCGATCTGGATGGAGATTTTGGATCATCATTTAAAATGGACATGCCAGAC 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GATATGGGTTTCGATCTGGATGGAGATTTTGGATCATCATTTAAAATGGACATGCCAGAC 417
Query 413 TTTGATTTCTCAAGCCCAGCCAAGAAAACCACAAAAACGAAAGAAAGCTCTGATGATAAA 472
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 418 TTTGATTTCTCAAGCCCAGCCAAGAAAACCACAAAAACGAAAGAGACCTCTGATGATAAA 477
Query 473 CCTAGTGGAAATTCAAAACAGAAAAAGAATCCATTTGCCTTCTCTTACGACTTTGATGCG 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CCTAGTGGAAATTCAAAACAGAAAAAGAATCCATTTGCCTTCTCTTACGACTTTGATGCG 537
Query 533 TTAGACGACTTTGATCTTGGTTCAAGCCCCCCGAAGAAGGGAAGCAAGACTACGACCAAG 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTAGACGACTTTGATCTTGGTTCAAGCCCCCCGAAGAAGGGAAGCAAGACTACGACCAAG 597
Query 593 ACCATGGACTGCAAAGAAATTTCTGCAAGTAGAAAG-GTTGATAAGTCAGACGATTTGGA 651
| ||||||||| ||||||||| ||||||||| ||| || ||||||||||||||||||||
Sbjct 598 AGCATGGACTGTGAAGAAATTTGTGCAAGTAGTAAGAGT-GATAAGTCAGACGATTTGGA 656
Query 652 CTTTGGTCTAGACTTACCAATAACTAGACAAGCTCCCTCCAAGGCAAATACAGATGTTCA 711
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 657 CTTTGGTCTAGACTTACCAATAACTAGACAAGTTCCCTCCAAGGCAAACACAGATGTTCA 716
Query 712 GGCAAAAGCTTCAGCTGAAAAAGAGAACCAAAATTCCAAGACTACAGATACTATTGTTGT 771
|||||||||||||||||||||||||| |||||||| |||||||||||||||| | |||||
Sbjct 717 GGCAAAAGCTTCAGCTGAAAAAGAGAGCCAAAATTACAAGACTACAGATACTCTGGTTGT 776
Query 772 TAATAAGAGCACACACTCGAGTCAAGCTGCATTAGAGAGCATGGGAGACTTTGAGGCGGT 831
||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 777 TAATAAGAGCAAAAACTCGAATCAAGCTGCATTAGAGAGCATGGGAGATTTTGAGGCGGT 836
Query 832 GGAATCACCTCAGGGTTCAAGaaaaaaaaCCTCACAAACTCATACATTGTGTGTGCAACC 891
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 837 GGAATCACCTCAGGGTTCAAGAAAAAAAGCCTCACAAACTCATACAATGTGTGTGCAACC 896
Query 892 TCAATCCGTAGATACTTCACCATTAAAGACATCATGTTCAATGGTTGAAGAAATGGATGA 951
|||||||||||||||||||||||| |||||||||||||||| ||||||||||| | ||||
Sbjct 897 TCAATCCGTAGATACTTCACCATTGAAGACATCATGTTCAAAGGTTGAAGAAAAGAATGA 956
Query 952 ACCATGTCCTTCAAATGAGACCGTAGCACCCTCGCCATTACATGCTTCTGAGATTGCACA 1011
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 957 ACCATGTCCTTCAAATGAGACCATAGCACCCTCGCCATTACATGCTTCTGAGATTGCACA 1016
Query 1012 TACTGCAGTTTACAGAGAAACCAGTCCAGATATCCACGAACTCTGCAGGTCTGGTACAAA 1071
|| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1017 TATTGCAGTAAACAGAGAAACCAGTCCAGATATCCATGAACTCTGCAGGTCTGGTACAAA 1076
Query 1072 AGAAGACTGTCCTAGAGATCCAGAAAATGCCAACAAGAAAATGATTTCCACCATGGAATC 1131
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1077 AGAAGACTGTCCTATAGATCCAGAAAATGCCAACAAGAAAATGATTACCACCATGGAATC 1136
Query 1132 AAGTTATGAGAAGATAGAACAGATTTCACCAAGCATCTCATCTCAGTTATGTTCAGACAA 1191
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1137 AAGTTATGAGAAGATAGAACAGACTTCACCAAGCATCTCATCTCATTTATGTTCAGACAA 1196
Query 1192 GATAGGACATCAACAGGAAGAAATGAGTACAGACACTCAGGCAGAATTACAGGATAACAC 1251
||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1197 GATAGAACATCAACAGGAAGAAATGGGTACAGACACTCAGGCAGAAATACAGGATAACAC 1256
Query 1252 TAAAGGAGCACTGTGTGACCCAGATGCTGGACATTCTCTAACAACCCTCTCAGGCAAAAT 1311
|||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TAAAGGAGCACTGTATAACTCAGATGCTGGACATTCTCTAACAACCCTCTCAGGCAAAAT 1316
Query 1312 ATCACCAGGCACTCGTCCAAGCCAAACTGCCAAGGTACAAGATTTGAGTGAAAAGCTACC 1371
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 ATCACCAGGCACTCGTACAAGCCAAACTGCCAAGGTACAAGATTTGAGTGAAAAGCTACC 1376
Query 1372 ACTGGATCCGTCCCACAGCATGCCAGGGCTCAATAATTTGAGGGCCATGCAAAACAAAGA 1431
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1377 ACTGGATCCGTCCCACAGCATGGCAGGGCTCGATAATTTGAGGGCCATGCAAAACAAAGA 1436
Query 1432 TTCAGGACTTATCAGATCCAGATTTTTTAATAAGCCAGAAAAACCAGAATCTCATGTGCT 1491
|| ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1437 TTTAGGACTTATCAGATCCAGATTTTTTAAGAAGCCAGAAAAACCTGAATCCCATGTGCT 1496
Query 1492 TGAGTCTTCTCCAATTCAAACAGAGATTCAGCCAGTTACCCGAGAAAACATTGGGTCGAG 1551
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1497 TGAGTCTTCTCCAATTGAAACAGAGATTCAGCCAGTTATCCGAGAAAACATTGGGTCAAG 1556
Query 1552 TTTGAACCCTACAAATGATAGGAGCAGTTCTCATGAAAAGATCATCCACAAGGCCCATTC 1611
|||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 1557 TTTGAACCCTACAAATGATACGAG---TTCTCATGAAAAGATCATCCACAAGGACCATTC 1613
Query 1612 AAATGCCAAGACTGTAGAAAATGTGGCTGGACAGATGGATCATTTAAAGCTGCAAGCTAA 1671
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 AAATGGCAAGACTGTAGAAAATGTGGCTGGACAGATGGATCATTTAAAGCTGCAAGCTAA 1673
Query 1672 AAATACAATTAGAGAGAAGTCCATCTTGCAGATCAATATAAGCTCAAAACTCGATGCTTC 1731
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1674 AAATACAACTAGAGAGAAGTCCATCTTGCAGATCAATATAAGCTCAAAACTTGATGCTTC 1733
Query 1732 TAGCTTGACTCAGAAACTAAGCAAACATTTGAGTTCCGGAG-CTGAATCTTTGCAGAAGC 1790
|||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||
Sbjct 1734 TAGCTTGACTCAGAAACTAAGCAATCATTTGAGTTCCGGAGTC-GAATCTTTGCAGAAGC 1792
Query 1791 CCAAAATGATAT-CTCTCGAAAGGCCTAAACTTGGAAATATTACGGCTGATCTGCGTGCA 1849
|||| ||| || |||| | ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1793 CCAAGTTGA-ATTCTCTGGGAAGGCCTAAACTTGGAAATATTATGGCTGATCTGCGTGCA 1851
Query 1850 GTGAAAACTCAAAGGAACGTTG-AGGA 1875
|||||||||||||||| | ||| ||||
Sbjct 1852 GTGAAAACTCAAAGGACCATTGGAGGA 1878
Score = 281 bits (152), Expect = 2e-74
Identities = 163/168 (97%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 1962 GCCAAGAGAGTAGAATAGATAAT-AGTACAACCAAGGAGCCTGTCAAGGAAAGTCCACAG 2020
||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||
Sbjct 2162 GCCAAGAGAGTAGAATAGATACTAAG-ACGACCAAGGAGCCTGTCAAGGAAAGTCCACAG 2220
Query 2021 ACTAAGTCTCATTACCAGAACATAAACATGGCAAATCTGGAAATCCCAATCACGGAGAAT 2080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 ACTAAGTCTCATTACCAGAACATAAACATGGCAAATCTGGAAATCCCAATCACGGAGAAT 2280
Query 2081 GCTGACAACATAGAGAAAGCTGAAGCATATACAAAAGAACTCGACAAT 2128
|||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2281 GCTGACAACATAGAGAAAGCTGAAGCATATACAAAAGAACTCGAGAAT 2328
Score = 217 bits (117), Expect = 5e-55
Identities = 123/126 (98%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 2197 TATTTGCAACATCCTGAAGAAGAAACATGAGGAAGCAAAAGAGTTACTTGTCCGTGCTGT 2256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2328 TATTTGCAACATCCTGAAGAAGAAACATGAGGAAGCAAAAGAGTTACTTGTCCGTGCTGT 2387
Query 2257 AGTAAACAACAATAAGCTACTGATGCTCAACCATCCTTTATATGAAGACCAGATATCCTT 2316
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2388 AGTAGACAACAATAAGTTACTGATGCTCAACCATCCTTTATATGAAGACCAGATATCCTT 2447
Query 2317 TTCATA 2322
|| |||
Sbjct 2448 TTTATA 2453
Score = 78.7 bits (42), Expect = 2e-13
Identities = 42/42 (100%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1862 AGGAACGTTGAGGAGCTCACACATAGAGCTGTGCAAGGAAAG 1903
||||||||||||||||||||||||||||||||||||||||||
Sbjct 2113 AGGAACGTTGAGGAGCTCACACATAGAGCTGTGCAAGGAAAG 2154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115310651865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5