BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493014
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18470.1 | Symbols: SNI1 | negative regulator of systemic ac... 2233 0.0
> AT4G18470.1 | Symbols: SNI1 | negative regulator of systemic
acquired resistance (SNI1) | chr4:10192909-10195662 FORWARD
LENGTH=1525
Length=1525
Score = 2233 bits (1209), Expect = 0.0
Identities = 1388/1474 (94%), Gaps = 13/1474 (1%)
Strand=Plus/Plus
Query 40 GAAATTGTGAAAGAGAAGATGTCGAAAGAGACGAA-GG--CTAACAACACTAGCAGAGTG 96
||||||||||||||||||||||||||||||||||| || |||||| || |||||||||
Sbjct 58 GAAATTGTGAAAGAGAAGATGTCGAAAGAGACGAAGGGTAATAACAATACAAGCAGAGTG 117
Query 97 ATGAGTAGCTATGGCGGTGGCTTGGAAGCTAACACCTTGGCTATGCTTGATTCCACCGGA 156
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 118 ATGAGTGGCTATGGCGGTAGCTTGGAAGCTAACACCTTGGCTATGATTGATTCCACCGGA 177
Query 157 GCTAAAGACAATCGCGACGCTAACGAAGATCGTTTGCAGTATCTGGAAGCTGTTCGTGCT 216
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GCTAAAGACAGTCGCGACGCTAACGAAGATCGTTTGCAGTATCTGGAAGCTGTTCGTGCT 237
Query 217 GCTTCACTTGTACCTGAGAATGGAGTTCCTCCAACCAACAAAATGTACCAAGCGATTTTC 276
|||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||
Sbjct 238 GCTTCACTTGTACCCGAAAATGGAATTCCTCCAACCAACAAAATGTACCAAGCGATTTTC 297
Query 277 CGGATATTGAGATTTGGTAAAACACTGGAACTTATAACAGCAAGTTTCCAGCTTTTGACA 336
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 298 AGGATATTGAGATTTGGTAAAACATTGGAACTTATCACAGCAAGTTTCCAGCTTTTGACT 357
Query 337 CAATTACATCAGCGGTTTCCTTGGGTTTATGTATCTGATTCATCTGATCAGTTGGAAATT 396
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 358 CAATTACATCAGCGGTTTCCTTGGGTTTATGTATCTGATTCAGCTGATCAGTTGGACATC 417
Query 397 GTTGACGAGGCTTGGTCACCGTTTAATTTCGGGTCTGATGTTGATTCTGATGAGAAGGAT 456
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 418 GTTGACGAGGCTTGGTCACCGTTTAATTTCGGGTCTGATGTTGATTCTGATGAAAAGGAT 477
Query 457 ATATCAGTGAGAAGCTTATTTTTTCAACAGCTGATTCAAAACATGAACAAAAGGGTTAGT 516
|||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| |
Sbjct 478 TTATCAGTGAGAAGCTTATTTTTGCAACAGCTGATTCAGAACATGAACAAAAGAGTTAAT 537
Query 517 GAGCCTGAGGAATCAAATTTAAAGACT-CTGGGGAATATGTTTCTGTTCAAGTATCTTGC 575
||| ||||||||||| ||||||||| | || || ||||||||||||||||||||||||||
Sbjct 538 GAGTCTGAGGAATCAGATTTAAAGA-TCCTTGGAAATATGTTTCTGTTCAAGTATCTTGC 596
Query 576 TCATGCTCTTAAGCTAGATTTCACGCCCCGGAATCAAGTGTATGAAGAAACCAAGAACTG 635
||||| |||||||||||||||||| ||||| |||||||||||||||||||| | ||||||
Sbjct 597 TCATGTTCTTAAGCTAGATTTCACACCCCGAAATCAAGTGTATGAAGAAACTATGAACTG 656
Query 636 GAGTCTTTTGAAGGAATCTTCTCTGAATCTACTTCTGGCTTCACGAAAAGTGAATTTCAA 695
|||||| || |||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 657 GAGTCTCTTAAAGGAATCTTTTCTGAATCTACTTCTGGCTTCAAGAAAAGTGAATTTCAA 716
Query 696 ACTTCTAATGAAAGATTATCTATCAACAATGTGTGCACCCATTGATGCTGATGAAAAGTC 755
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 717 ACTTCTAATGAAAGATTATCTATCAACAATGTGTGCATCCATTGATGCTGATGAAAAGTC 776
Query 756 TATCAGTTTGGTAGAATTGCACAAGGACACGCTTTCTGCTATGAAGGAACTACTAGTAAT 815
||||||||||||||||||||||||||||| |||| |||||||||| ||||| ||||||||
Sbjct 777 TATCAGTTTGGTAGAATTGCACAAGGACATGCTTACTGCTATGAAAGAACTTCTAGTAAT 836
Query 816 GATCATTGAGCTTGATTCTTCAAAGAAGAAAGCTGACTTAGAAGGGATTACCTCTAGAGG 875
|||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GATCATGGAGCTTGATACATCAAAGAAGAAAGCTGACTTAGAAGGGATTACCTCTAGAGG 896
Query 876 AGATGGCGTAAGGACTCCTGCAATGGAGATCATTCTCGATGAGCTGACTTATGATGGATA 935
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 897 AGATGGCGTAAGGACCCCTGCAATGGAGATCATTCTCGACGAGCTGACTTATGATGGATA 956
Query 936 CTTGCTATCAAATTTTCTTCAGGTTTTCGATGATCCTAAATGGAAGTTAGAGATTGTTCT 995
|||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 957 CTTGCTGTCAAAATTTCTTCAGGTTTTCGATGATCCTAAATGGAAGCTAGAGATTGTTCT 1016
Query 996 CCAATACCTTACCAAATACATCCCTAAGCCT-TCTGTTCGTACCCGAAGAACAACTGTTC 1054
|||||||||||| |||||||| ||||||||| | ||| ||||||||||||||||||||||
Sbjct 1017 CCAATACCTTACTAAATACATTCCTAAGCCTGT-TGTACGTACCCGAAGAACAACTGTTC 1075
Query 1055 CTCAATCAGAGGATTCGAAAACACTAAATGGGATCTTGAAGACATTTTCAAATGGCTTAA 1114
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1076 CTCAAGCAGAGGATTCGAAAACACTAAATGGGATCTTGAAGACGTTTTCAAATGGCACAA 1135
Query 1115 ATGCAAAGAACATCACTAAAAAGATAGGACCTGACATTGTTCAGATCCTCATCGGACATG 1174
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1136 ATCCAAAGAACATCACTAAAAAGATAGGACCTGACATTGTTCAGATCCTCATCGGCCATG 1195
Query 1175 CCTTTCTGGCTCGGCTTACATTCTCTGACCCTAACGAAGAAGACTCTATTACAGAGATAT 1234
|||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||
Sbjct 1196 CCTTTCTGGCTCGGCTTACATTCTCTGACCCTCACGAAGGAGACTCTATTTCAGAGATAT 1255
Query 1235 GCAATAGAATCATCTCTGCATTTACAAGTCTAAAGCGAGTAGATCAGAAAATCGAGATTC 1294
||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1256 GCAGTAGTATCATCTCTGCATTTACTAGTCTAAAGCGAGTAGATCAGAAAATCGAGATTC 1315
Query 1295 TACCGTTTGGGAAAGAAGTGTTGTTTACTGCAGGAATGGTACTCAAGGCAAAAGCATAAG 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1316 TACCGTTTGGGAAAGAAGTGTTGTTTACTGCAGGAATGGTACTCAAGGCAAAAGCTTAAA 1375
Query 1355 GCATCTAGGAATCAAGATTTTAACAAATCTAGAGGCTTCCATTGGATTAAAAGCAAGGAA 1414
|||||||||||||||||||||||||||||||||| |||| ||||||||| |||||| |||
Sbjct 1376 GCATCTAGGAATCAAGATTTTAACAAATCTAGAGACTTCAATTGGATTAGAAGCAAAGAA 1435
Query 1415 GGTACA-TGTAATGTAGGAATTAAGAGTTACAG-TCCAATGAATTATGAATTTATATATT 1472
| |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1436 GTTACAATGTAATGTAGGAATTAAGAGTTACAGATC-AATGAATTATGAATTTATATATT 1494
Query 1473 CTACTATAGTTTTGCCGATACAAGATGAGTGATC 1506
||| || |||||||| |||||| ||||||||||
Sbjct 1495 CTA-TA--GTTTTGCCAATACAAAATGAGTGATC 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74296806600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5