BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493018
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18430.1 | Symbols: AtRABA1e, RABA1e | RAB GTPase homolog A1... 1347 0.0
> AT4G18430.1 | Symbols: AtRABA1e, RABA1e | RAB GTPase homolog
A1E | chr4:10183717-10185280 REVERSE LENGTH=897
Length=897
Score = 1347 bits (729), Expect = 0.0
Identities = 796/829 (96%), Gaps = 2/829 (0%)
Strand=Plus/Plus
Query 1 CAACATCTCTCTGAATTCTTCTTTAATAATTTGTAACTTCGATCAAATATCTTAATAATG 60
||||||||||||||||||||||||| | ||||||||||| |||||||| ||||||||||
Sbjct 1 CAACATCTCTCTGAATTCTTCTTTACGATTTTGTAACTTCTATCAAATACCTTAATAATG 60
Query 61 GGAGCGTACAGAGCCGACGACGACTACGATTATCTCTTTAAACTAGTCTTGATTGGAGAT 120
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GGAGCCTACAGAGCCGACGACGACTACGATTATCTCTTCAAACTAGTCTTGATTGGAGAT 120
Query 121 TCCGGCGTCGGAAAATCAAACCTCTTGTCTCGATTCACCAGAAATGAATTCAGCATCGAG 180
||||||||||||||||| || || |||||||| ||||||||||| |||||||||||||||
Sbjct 121 TCCGGCGTCGGAAAATCCAATCTTTTGTCTCGCTTCACCAGAAACGAATTCAGCATCGAG 180
Query 181 TCAAAGTCAACCATCGGTGTCGAGTTCGCCACAAGAAGTGTTCATGTCGACGAGAAAATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TCAAAGTCAACCATCGGTGTCGAGTTCGCCACAAGAAGTGTTCATGTCGACGAAAAAATC 240
Query 241 ATCAAAGCTCAGCTTTGGGATACCGCTGGTCAAGAAAGGTACAGAGCAATCACGAGTGCA 300
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 241 ATCAAAGCTCAGCTTTGGGACACCGCTGGTCAAGAAAGATACAGAGCAATCACGAGTGCA 300
Query 301 TACTACAGAGGAGCAGTGGGGGCACTTCTAGTATACGACATAACTAGACACATAACGTTC 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 TACTACAGAGGAGCAGTGGGGGCACTTCTAGTATACGACATAACTCGACACATAACGTTC 360
Query 361 GAAAACGTTGAACGATGGCTCAAGGAGCTTCGTGACCATACTGATGCCAACGTTGTGATC 420
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 361 GAAAACGTTGAAAGATGGCTCAAGGAGCTTCGTGACCATACCGATGCCAACGTTGTAATC 420
Query 421 ATGCTTGTTGGAAACAAAGCCGATCTTCGACACCTTCGTGCAGTCCCCACAGAAGAAGCT 480
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 421 ATGCTTGTTGGAAACAAAGCCGATCTTCGTCACCTTCGTGCAGTTCCCACAGAAGAAGCT 480
Query 481 AGATCATTCTCTGAAAGAGAAAACATGTTTTTCATGGAGACTTCTGCTTTGGATGCTACA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGATCATTCTCTGAAAGAGAAAACATGTTTTTCATGGAGACTTCTGCTTTGGATGCTACA 540
Query 541 AATGTCGAACAAGCTTTCACTCATGTTTTGACTCAAATCTATCGTGTAATGAGCCGTAAA 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 AATGTCGAACAAGCTTTCACTCATGTCTTGACTCAAATCTATCGTGTAATGAGCCGTAAA 600
Query 601 GCTCTTGATGGTACTGGAGATCCGATGTCTTTACCTAAAGGACAGACCATTGATATTGGA 660
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 601 GCTCTTGATGGTACTGGAGATCCGATGTCTTTACCTAAAGGACAAACCATTGATATCGGA 660
Query 661 AACAAAGATGATGTTACTGCTGTTAAATCATCTGGTTGTTGCTCAGGTTGAGATTAttgt 720
|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 AATAAGGATGATGTTACTGCTGTTAAATCTTCTGGTTGTTGCTCAGGTTGAGATTATTGT 720
Query 721 ttttgtttcttgtaaactgtctttttggaaggaggttttggatttggttttgttgtattg 780
|||||||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct 721 TTTTGTTT-TTGTAAACTGTCTTTTTGGAAGAAGGCTTTGGCTTTGGTTTTGTTGTATTG 779
Query 781 gactatttttggggacttcattttAAGGTTATGAGACCGGTTTGGTTTT 829
|||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 780 GACTATTTTTGGGGGCTTCATTTTAAGGTTATGAGACCGGTTTG-TTTT 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42749259097
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5