BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493018 Length=876 Score E Sequences producing significant alignments: (Bits) Value AT4G18430.1 | Symbols: AtRABA1e, RABA1e | RAB GTPase homolog A1... 1347 0.0 > AT4G18430.1 | Symbols: AtRABA1e, RABA1e | RAB GTPase homolog A1E | chr4:10183717-10185280 REVERSE LENGTH=897 Length=897 Score = 1347 bits (729), Expect = 0.0 Identities = 796/829 (96%), Gaps = 2/829 (0%) Strand=Plus/Plus Query 1 CAACATCTCTCTGAATTCTTCTTTAATAATTTGTAACTTCGATCAAATATCTTAATAATG 60 ||||||||||||||||||||||||| | ||||||||||| |||||||| |||||||||| Sbjct 1 CAACATCTCTCTGAATTCTTCTTTACGATTTTGTAACTTCTATCAAATACCTTAATAATG 60 Query 61 GGAGCGTACAGAGCCGACGACGACTACGATTATCTCTTTAAACTAGTCTTGATTGGAGAT 120 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 GGAGCCTACAGAGCCGACGACGACTACGATTATCTCTTCAAACTAGTCTTGATTGGAGAT 120 Query 121 TCCGGCGTCGGAAAATCAAACCTCTTGTCTCGATTCACCAGAAATGAATTCAGCATCGAG 180 ||||||||||||||||| || || |||||||| ||||||||||| ||||||||||||||| Sbjct 121 TCCGGCGTCGGAAAATCCAATCTTTTGTCTCGCTTCACCAGAAACGAATTCAGCATCGAG 180 Query 181 TCAAAGTCAACCATCGGTGTCGAGTTCGCCACAAGAAGTGTTCATGTCGACGAGAAAATC 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 181 TCAAAGTCAACCATCGGTGTCGAGTTCGCCACAAGAAGTGTTCATGTCGACGAAAAAATC 240 Query 241 ATCAAAGCTCAGCTTTGGGATACCGCTGGTCAAGAAAGGTACAGAGCAATCACGAGTGCA 300 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 241 ATCAAAGCTCAGCTTTGGGACACCGCTGGTCAAGAAAGATACAGAGCAATCACGAGTGCA 300 Query 301 TACTACAGAGGAGCAGTGGGGGCACTTCTAGTATACGACATAACTAGACACATAACGTTC 360 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 301 TACTACAGAGGAGCAGTGGGGGCACTTCTAGTATACGACATAACTCGACACATAACGTTC 360 Query 361 GAAAACGTTGAACGATGGCTCAAGGAGCTTCGTGACCATACTGATGCCAACGTTGTGATC 420 |||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 361 GAAAACGTTGAAAGATGGCTCAAGGAGCTTCGTGACCATACCGATGCCAACGTTGTAATC 420 Query 421 ATGCTTGTTGGAAACAAAGCCGATCTTCGACACCTTCGTGCAGTCCCCACAGAAGAAGCT 480 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 421 ATGCTTGTTGGAAACAAAGCCGATCTTCGTCACCTTCGTGCAGTTCCCACAGAAGAAGCT 480 Query 481 AGATCATTCTCTGAAAGAGAAAACATGTTTTTCATGGAGACTTCTGCTTTGGATGCTACA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 AGATCATTCTCTGAAAGAGAAAACATGTTTTTCATGGAGACTTCTGCTTTGGATGCTACA 540 Query 541 AATGTCGAACAAGCTTTCACTCATGTTTTGACTCAAATCTATCGTGTAATGAGCCGTAAA 600 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 541 AATGTCGAACAAGCTTTCACTCATGTCTTGACTCAAATCTATCGTGTAATGAGCCGTAAA 600 Query 601 GCTCTTGATGGTACTGGAGATCCGATGTCTTTACCTAAAGGACAGACCATTGATATTGGA 660 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 601 GCTCTTGATGGTACTGGAGATCCGATGTCTTTACCTAAAGGACAAACCATTGATATCGGA 660 Query 661 AACAAAGATGATGTTACTGCTGTTAAATCATCTGGTTGTTGCTCAGGTTGAGATTAttgt 720 || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 661 AATAAGGATGATGTTACTGCTGTTAAATCTTCTGGTTGTTGCTCAGGTTGAGATTATTGT 720 Query 721 ttttgtttcttgtaaactgtctttttggaaggaggttttggatttggttttgttgtattg 780 |||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct 721 TTTTGTTT-TTGTAAACTGTCTTTTTGGAAGAAGGCTTTGGCTTTGGTTTTGTTGTATTG 779 Query 781 gactatttttggggacttcattttAAGGTTATGAGACCGGTTTGGTTTT 829 |||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 780 GACTATTTTTGGGGGCTTCATTTTAAGGTTATGAGACCGGTTTG-TTTT 827 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42749259097 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5