BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493019
Length=443
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 529 1e-149
> AT4G18400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10169866-10171257
REVERSE LENGTH=518
Length=518
Score = 529 bits (286), Expect = 1e-149
Identities = 326/345 (94%), Gaps = 3/345 (1%)
Strand=Plus/Plus
Query 1 GAAACTCCTTTAATGGCGGAAGAAGAGAAGCGAACTTCACCGGAACCTCCTCTTCCTTCT 60
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 25 GAAACTTCTTCAATGGCGGAAGAAGAGAAGCGAACTTCACCGGAACCTCCTCTTCCTTCT 84
Query 61 CCGCCGGAATCTTC-TCCTCAACCCAAAGATCCACCGCCGGAATCTTCTACTTCTCCGGC 119
|||||||||||||| ||| |||||| || |||| || |||||| | |||||| |||||||
Sbjct 85 CCGCCGGAATCTTCATCC-CAACCCGAACATCCCCCACCGGAAACGTCTACTCCTCCGGC 143
Query 120 TACATTCGATCCTAGTCGAATGATTGGGATCATCAAAAGGAAAGCTTTGATTAAGGATTT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 TACATTCGATCCTAGTCGAATGATTGGGATCATCAAAAGGAAAGCTTTGATTAAGGATTT 203
Query 180 AGCTGCTGCTTACCACGCCGAGTGTCTTGCTCTTTGCCGAGAACTTCTCGAGCTTCAAAA 239
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 204 AGCTGCTGCTTACCACGTTGAGTGTCTTGCTCTTTGCCGAGAGCTTCTGGAGCTCCAAAA 263
Query 240 GAGAAAGGACGAGCCGTTCCTGGACACCAAAGCTACGGAAGATCTGAGAAAAGAGACGTT 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 264 GAGAAAGGACGAGCCGTTCCTGGACACAAAAGCTACGGAAGATCTGAGAAAAGAGACGTT 323
Query 300 GAGGTCTTCTTCCAAACGAGCTAAGAAAAAACGTTAAAAG-AAAA 343
||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 324 GAGGTCTTCTTCCAAACGAGCTAAGAAGAAACGTTAAAAGGAAAA 368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21062186831
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5