BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493022
Length=1692
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18390.1 | Symbols: TCP2 | TEOSINTE BRANCHED 1, cycloidea an... 2483 0.0
> AT4G18390.1 | Symbols: TCP2 | TEOSINTE BRANCHED 1, cycloidea
and PCF transcription factor 2 | chr4:10162953-10165562 REVERSE
LENGTH=1845
Length=1845
Score = 2483 bits (1344), Expect = 0.0
Identities = 1593/1707 (93%), Gaps = 41/1707 (2%)
Strand=Plus/Plus
Query 1 ACAGTGCTTTTGATGA--CTCTGCAAC-AACAGCAGCTGCTTCAGACAAAGCTTAAACGA 57
|||||||||||||||| ||||||||| |||| |||| ||| ||||||||||||| ||||
Sbjct 147 ACAGTGCTTTTGATGACTCTCTGCAACAAACAACAGCAGCTGCAGACAAAGCTTATACGA 206
Query 58 AGCTGTATCTACTGACTTTGATGGTGAAATATCAAAAACCCTAAATTTA-TTaaaaaaaa 116
||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 207 AGCTGTATCTACTGACTTTGATGGTGAAATATCAAAAACCCTAAATTAATTTTAAAAAAA 266
Query 117 aaCACAAtttttttt-tttttttggtttttCCTCTGAGGGTTTTCATCATCAATGCTTAC 175
||||| ||||||||| || |||||||||||||||||||||| ||||||||||||||||||
Sbjct 267 AACAC-ATTTTTTTTCTTCTTTTGGTTTTTCCTCTGAGGGTATTCATCATCAATGCTTAC 325
Query 176 AAAGTACAGTGGGTaaacaaaacaaaaatataaaaaCCAAtttttttC-CACTTCTTTAA 234
||||||||||||||||||||||| |||| | ||||||| ||||||||| | |||||||||
Sbjct 326 AAAGTACAGTGGGTAAACAAAAC-AAAA-ACAAAAACCCATTTTTTTCTC-CTTCTTTAA 382
Query 235 ATCCCAAACCAACCCTAAAGTTTCGATTTTTAAATTTGGGGGAAACCAACAGaaaaa-aa 293
||||||||||||||||||||||| ||||||||| |||||||| |||||| | ||||| ||
Sbjct 383 ATCCCAAACCAACCCTAAAGTTTTGATTTTTAATTTTGGGGGTAACCAA-AAAAAAACAA 441
Query 294 aaCCCTAA-tttttttCTTTGGTCATGAGATTATTGGTGATGATGAAATGATTGGAGATC 352
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 442 AACCCTAATTTTTTTTCTTTAGTGATGAGATTATTGGTGATGATGAAATGATTGGAGATC 501
Query 353 TAATGAAGAAT---AACAATGGCGACGTTGTGGATAGCGGAA-ACAACAACCGGTTAAGC 408
||||||||||| |||||||||||||||||||||| | ||| |||||||||||||||
Sbjct 502 TAATGAAGAATAACAACAATGGCGACGTTGTGGATAAC-GAAGTGAACAACCGGTTAAGC 560
Query 409 CGGTGGCATCACAATTCTTCCCGGATAATTAGGGTTTCTCGAGCTTCCGGTGGTAAAGAT 468
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 561 CGGTGGCATCACAATTCTTCCCGGATAATTAGGGTTTCACGAGCTTCCGGTGGTAAAGAT 620
Query 469 CGACACAGCAAAGTCTTGACTTCGAAAGGTCCACGTGACCGGCGTGTCCGGTTATCAGTC 528
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 621 CGACACAGCAAAGTCTTGACTTCTAAAGGACCACGTGACCGTCGTGTCCGGTTATCAGTC 680
Query 529 TCCACTGCTCTTCAATTCTATGATCTTCAAGATCGGTTAGGTTACGATCAACCGAGCAAA 588
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 681 TCCACCGCTCTTCAATTCTATGATCTTCAAGATCGGTTAGGTTATGATCAACCTAGCAAA 740
Query 589 GCTGTGGAATGGTTAATCAAAGCTGCTGAAGATTCAATCTCTGAGCTTCCTTCACTCAAC 648
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCTGTTGAATGGTTAATCAAAGCTGCTGAAGATTCAATCTCTGAGCTTCCTTCACTCAAC 800
Query 649 AACACTAATTTTCCGACCGATGACGAGAATCATCAGAACCAGACATTAGCAAGAACAGTT 708
|||||| ||||||||||||||||||||||||| ||||| |||||||| || |||||||
Sbjct 801 AACACTCATTTTCCGACCGATGACGAGAATCACCAGAATCAGACATT---AACAACAGTT 857
Query 709 GCTGCTGCGAATTCGTTGTCTAAATCGGCTTGTAGTAGTAATTCAGACACGAGCAAGAAC 768
|||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 858 GCTGCT---AATTCCTTGTCTAAATCTGCTTGTAGTAGCAATTCAGACACGAGCAAGAAC 914
Query 769 TCTTCTGGTTTGTCTTTATCAAGATCGgagctaagagataaagctagagagagagctaga 828
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 915 TCTTCTGGTTTGTCTTTATCAAGATCGGAGCTTAGAGATAAAGCTAGAGAGAGGGCTAGA 974
Query 829 gagagaacagctaaagagaccaaggagagagaTCATAACCACACTTCTTCGTTTACCGAT 888
|||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||
Sbjct 975 GAGAGAACAGCTAAAGAGACCAAGGAAAGAGATCATAACCACA---CTTCGTTTACGGAT 1031
Query 889 TTGTTAAATTCCGGTTCAGATCCGGTTAACTCAAACCGGCAATGGATGGCTTCAGCTCCT 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 TTGTTAAATTCCGGTTCAGATCCGGTTAACTCAAACCGGCAATGGATGGCTTCAGCTCCT 1091
Query 949 TCTTCATCTCCAATGGAGTATTTTAGTTCGGGTTTAATTCTCGGGTCGGGTCAACAAACC 1008
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1092 TCTTCATCTCCAATGGAGTATTTCAGTTCGGGTTTAATTCTCGGGTCGGGTCAACAAACC 1151
Query 1009 CATTTCCCGATTTCAACAAATTCtcatcctttctcatcaatctccgatcaccatcatcat 1068
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1152 CATTTCCCTATTTCAACAAATTCTCATCCTTTCTCATCAATCTCCGATCATCATCATCAT 1211
Query 1069 catcatcatc--CA-CACCAAGAGTTTTCATTCGTTCCCGACCATTTGATATCACCGGCA 1125
|||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 CATCCTCATCATCAGCATCAAGAGTTTTCATTCGTTCCCGACCATTTGATATCACCGGCA 1271
Query 1126 GGATCCAACGGCGGAGCATTCAATCTTGATTTCAACATGTCGACACCCTCCGGCGCCGGA 1185
| |||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 1272 GAATCCAACGGCGGAGCATTCAATCTTGATTTTAATATGTCAACACCCTCCGGCGCCGGA 1331
Query 1186 GCTGCCGTCTCCGCCGCATCAGGTGGTGGGTTCAGTGGTTTCAACAGGGGGACCCTTCAG 1245
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1332 GCTGCCGTCTCCGCCGCATCAGGTGGTGGCTTCAGTGGTTTCAACAGGGGGACCCTTCAG 1391
Query 1246 TCCAATTCAACAAATCATCATCAGCATCAGTCATTTCTCGCTAATCTACAGAGGTTTCCA 1305
||||||||||| | | |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1392 TCCAATTCAAC--A--A--ATCAGCATCAGTCATTCCTCGCTAATCTACAGAGGTTTCCA 1445
Query 1306 TCATCAGAAAATGGTGGAGGTCCACAGTTCTTATTCGGTGCACTGCCTGCAGAGAATCAC 1365
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 ACATCAGAAAGTGGAGGAGGTCCACAGTTCTTATTCGGTGCACTGCCTGCAGAGAATCAC 1505
Query 1366 CACCACAATCACCAGTTTCAGCTTTACTATGAAAATGGATGCAGAAACTCATCAGACCAT 1425
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1506 CACCACAATCACCAGTTTCAGCTTTACTATGAAAATGGATGCAGAAACTCATCAGAACAT 1565
Query 1426 AAAGGTAAAGGCAAGAACTGATGATATTAATTATTGCATCTTTGGTTTAATTCAGATCCT 1485
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 1566 AAGGGTAAAGGCAAGAACTGATGATATTAATTATTGCATCTTTGGTTTTGTTCAAATGCT 1625
Query 1486 CATTTTGTATGTTTAATTTTTGGTTTATTTCAAAACAAATGTTAATCTCTTTTGTTGTCT 1545
||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1626 CATTTTGTATGTTTA-TCTTTGGTTTATTTCAAAACAAATGTTAATCTCTTTCGTTGTCT 1684
Query 1546 GATCTGTGTTAGGGttttttttttGTAATGTTTTGAGGGTCTTTTGAAATCTGTTAGCAT 1605
||| |||||||||||||| |||| | ||| |||||||||||| ||||||| || ||||
Sbjct 1685 GATGTGTGTTAGGGTTTTGTTTT---A-TGTATTGAGGGTCTTTGGAAATCTTTTTGCAT 1740
Query 1606 TGTATTTGTAATGTTGTATTTGTGATAATACCATTTTGTTTGTGAGTTTATAATTCAATT 1665
||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1741 TGTGCTTGTAATGTTGTATTTGTGATAATAGCATTTTGTTTGTGAGTTTATAATTGAATT 1800
Query 1666 TTTGAGTGTTATTTTTGGCATGAAATT 1692
||||| ||||||||||| |||| ||||
Sbjct 1801 TTTGAATGTTATTTTTGCCATGTAATT 1827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83634107970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5