BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493025
Length=1828
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18375.2 | Symbols: | RNA-binding KH domain-containing prot... 2704 0.0
AT5G46190.1 | Symbols: | RNA-binding KH domain-containing prot... 754 0.0
> AT4G18375.2 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152486-10155293 FORWARD LENGTH=2084
Length=2084
Score = 2704 bits (1464), Expect = 0.0
Identities = 1722/1843 (93%), Gaps = 31/1843 (2%)
Strand=Plus/Plus
Query 3 TAACAATGGTAGAACGCAAGAAACGGAAACAGAATCAGAGAAACAACAATGAGAGCAACC 62
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 91 TAACAATGGTAGAACGCAAGAAACGGAAACAGATTCAGAGAAACAACAGTGAGAGCAACA 150
Query 63 GGAATCAAAAGAGACGAATTTCAAATAATGGTGAAAAGATCAATAGAGATGAGCTTGTGA 122
|||||||||||||||||||||| | | ||| ||||| ||||||||||||||||| |
Sbjct 151 GGAATCAAAAGAGACGAATTTC--A-CA---TGATAAGATTAATAGAGATGAGCTTGT-A 203
Query 123 -TTTACAGAATCTTATGTCCTATTGATGTTGTTGGAGGTGTTATAGGCAAGAGTGGTAAA 181
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 204 GTTTACAGAATCTTATGTCCTATTGATGTTGTTGGAGGTGTTATAGGTAAAAGTGGTAAA 263
Query 182 GTCATCAATGCCATTAGGCATAACACGAAAGCCAAGATCAAAGTTTTTGATCAGTTACAT 241
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 264 GTCATCAACGCCATTAGGCATAACACAAAAGCCAAGATCAAAGTATTTGATCAGTTACAT 323
Query 242 GGTTGCAGCCAAAGAGTCATAACAATCTATTGCTCGGTTAAAGAGAAAAAAGAAGAAGAA 301
||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||
Sbjct 324 GGTTGCAGCCAAAGAGTCATAACAATCTATTGCTCTGTTAAAGAG---AAACAAGAAGAA 380
Query 302 ATCGATTTTATGAAGAGCGAAACCGAGCCTCTTTGTTGTGCGCAAGATGCTCTTCTTAAA 361
|||| ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 381 ATCGGTTTTACGAAGAGCGAAAACGAGCCTCTTTGTTGTGCACAAGATGCTCTTCTTAAA 440
Query 362 GTTTATGATGCAATTGTAGCTAGTGATGAAGAG---AACATTAAG----A--TAGATAGA 412
|| |||||||||||||||||||||||||||||| |||| |||| | ||||||||
Sbjct 441 GTCTATGATGCAATTGTAGCTAGTGATGAAGAGAACAACACTAAGACTAATGTAGATAGA 500
Query 413 GATGATAAGAAGGAATGCCGTCTTTTAGTTCCGTCTAGTCAATCTTTTAGTTTGATTGGT 472
|||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 501 GATGATAACAAGGAATGCCGTCTTTTAGTTCCGTTTAGTCAATCTTCTAGTTTGATTGGT 560
Query 473 AAGGCTGGTGAGAACATTAAGAGGATAAGAAGTACAACTCGAGCTAGTGTTAAGGTTGTT 532
|||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||
Sbjct 561 AAGGCTGGTGAGAACATTAAGAGGATAAGACGTAGAACTAGAGCTAGTGTTAAGGTTGTT 620
Query 533 TCGAAAGATGTTTCGGATCCTTCACATGTTTGTGCCATGGATTATGACAATATAGTTGTG 592
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 621 TCGAAAGATGTTTCGGATCCTTCACATGTTTGTGCCATGGAATATGACAATGTAGTTGTG 680
Query 593 ATATCTGGTGAGCCTGAATCCGTGAAGAAAGCGCTTTTCGCTGTTTCTGCAATCCTGTAC 652
||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||
Sbjct 681 ATATCTGGTGAGCCTGAATCCGTGAAGCAAGCGCTTTTTGCTGTTTCTGCAATCATGTAC 740
Query 653 AAGATCAATCCTCGAGAACATATTCCTCTAGATTCAACCGGCCAAGATGTT-C--CAGCT 709
|||||||||||||| ||| |||||||||||||||||||| ||||||||||| | |||||
Sbjct 741 AAGATCAATCCTCGTGAAAATATTCCTCTAGATTCAACCAGCCAAGATGTTCCAGCAGCT 800
Query 710 AGTATTATAGTTTCATCAGATCTTTCTAATTCTGTCTATCCTCAAACTGGATTTTACTCA 769
||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 801 AGTGTTATAGTTCCATCAGATCTTTCTAATTCTGTCTATCCTCAAACGGGATTTTACTCG 860
Query 770 AACCAGGATCATATTCTTCAGCAACGAGCGGGTGTTCCGTCATATTTCAATGCACTATCT 829
|| || |||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 861 AATCAAGATCATATTCTTCAGCAAGGGGCGGGTGTTCCGTCATATTTCAATGCACTATCT 920
Query 830 GTATTTAACTTTCAAGGTTATGCAGAAACCGCTGCGAATCCAATGCCTGTTTTTGCTTCT 889
|||| | ||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 921 GTATCTGACTTTCAAGGTTACGCAGAAACCGCTGCGAATCCAGTGCCTGTTTTTGCTTCT 980
Query 890 TCTCTCCCAGTGACTCATGGTTTTGGTGGGTCTTCCAGGTCAGAAGAGCTGGTTTTAAAA 949
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 981 TCTCTCCCAGTGACTCATGGTTTTGGTGGGTCTTCCAGATCAGAAGAGCTGGTTTTTAAA 1040
Query 950 GTGTTGTGCCCTTTGTCCAATATTACT-CGTGTAATCGGGAAAGGAGGGTCAACCATTAA 1008
|| ||||||||||||| |||||||| | |||||||||||||||||||| |||||||||||
Sbjct 1041 GTCTTGTGCCCTTTGTGCAATATTA-TGCGTGTAATCGGGAAAGGAGGATCAACCATTAA 1099
Query 1009 AAGAATAAGAGAAGCTAGCGGTTCTTGTATTGAGGTTAATGACTCAAGAACAAAGTGTGG 1068
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1100 AAGAATAAGAGAAGCAAGCGGTTCTTGTATTGAGGTTAATGACTCGAGAACAAAGTGTGG 1159
Query 1069 TGATGATGAGTGTGTTATCATTGTCACTGCTACAGAGTCTCCTGATGATATGAAGTCTAT 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TGATGATGAGTGTGTTATCATTGTCACTGCTACAGAGTCTCCTGATGATATGAAGTCTAT 1219
Query 1129 GGCTGTTGAAGCTGTTCTTCTTCTGCAAGAGTATATCAACGATGAGAATGCGGAAAAAGT 1188
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1220 GGCTGTTGAAGCTGTTCTTCTTCTGCAAGAGTATATCAACGATGAGGATGCGGAAAATGT 1279
Query 1189 TAAGATGCAACTTCTTGTTTCTTCTAAGGATATTGGATGTGTTATAGGGAAAAGTGGCTC 1248
||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||
Sbjct 1280 TAAGATGCAACTTCTTGTTTCTTCTAAGGTTATTGGATGCGTTATAGGGAAGAGTGGCTC 1339
Query 1249 AGTCATAAACGAAATCAGGAAAAGAACCAATGCTAATATCTGTATCTCGAAAGGGAAAAA 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 AGTCATAAACGAAATCAGGAAAAGAACCAATGCTAATATCTGTATCTCGAAAGGGAAAAA 1399
Query 1309 GGATGACCTTGTTGAGGTAGCGGGTGAAATCAGCAGTGTGAGAGACGCTCTCATTCAGAT 1368
||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||||||
Sbjct 1400 GGATGACCTTGTTGAGGTATCAGGTGAAGTCAGTAGTGTGAGAGACGCTCTCATTCAGAT 1459
Query 1369 CGTTCTAAGACTTCGAGAGGATGTTTTAGGAGATAGAGATATTGTTGCTACTAGTAGGAA 1428
||||||||||||||||||||||||||||||||| | ||||| |||||||||||| | ||
Sbjct 1460 CGTTCTAAGACTTCGAGAGGATGTTTTAGGAGACAAAGATAGTGTTGCTACTAG--G-AA 1516
Query 1429 ACCTCCTGCAAGAACTGATAATTATAGTTTATTCTCGGGTAGTAGTAATGCCGGTTATAC 1488
||||||||||||||||||||| | |||||| || ||||||||||||||||||||||||||
Sbjct 1517 ACCTCCTGCAAGAACTGATAACTGTAGTTTCTTATCGGGTAGTAGTAATGCCGGTTATAC 1576
Query 1489 ACTTCCGTCGTTCATGTCTTC---GGCTTCTTCAAGCGGTTTCCATGGTTATGGAAGCTT 1545
|||||| |||||||||||||| ||||||| ||||||| ||||||||||||||||||||
Sbjct 1577 ACTTCCATCGTTCATGTCTTCAATGGCTTCTACAAGCGGATTCCATGGTTATGGAAGCTT 1636
Query 1546 TCCGGCAGGAGATAACGTTTTTGGATCAGTCAGTCCATACTCATTTGGACGATTGCCTTC 1605
||||||||||||||| ||||| |||||| | |||||||||||| |||||| ||||||||
Sbjct 1637 TCCGGCAGGAGATAATGTTTTGGGATCAACCGGTCCATACTCATATGGACGTTTGCCTTC 1696
Query 1606 ATCTTCTGCTCTGGAGATTCTAATCCCGGCAAATGCAGTGAGTAAAGTTATGGGCAAAGG 1665
|||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||
Sbjct 1697 ATCTTCTGCTCTGGAGATTCTAATCCCGGCGCATGCAATGAGTAAAGTTATGGGAAAAGG 1756
Query 1666 AGGAAGCAATTTGGAAAACATAAGAAGGATATCGGGAGCAATGATAGAAATATCCGATTC 1725
|||| |||||||||||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct 1757 AGGAGGCAATTTGGAAAACATAAGAAGGATATCGGGAGCGATGATAGAAATATCTGCTTC 1816
Query 1726 CAAAACGTCACAGGGTGATCACATTGCTCTCCTATCCGGCACACTTGAACAGATGCGTTG 1785
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1817 CAAAACGTCACATGGTGATCACATTGCTCTCTTATCCGGCACACTTGAACAGATGCGTTG 1876
Query 1786 TGCAGAGAACTTAGTCCAAGCTTTTATTATGTCCACTTGAAAA 1828
|||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1877 TGCAGAGAACTTGGTCCAAGCTTTTGTTATGTCCACTTGAAAA 1919
> AT5G46190.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:18723116-18726200 REVERSE LENGTH=2414
Length=2414
Score = 754 bits (408), Expect = 0.0
Identities = 1198/1559 (77%), Gaps = 135/1559 (9%)
Strand=Plus/Plus
Query 37 TCAGAGA-AACAACAATGAGAGCAACCGGAATCAAAAGAGACGAATTTC--A--AAT--- 88
||||||| ||||||||||| | |||||||||||||| |||| || |||| | |||
Sbjct 195 TCAGAGACAACAACAATGACAACAACCGGAATCAAAGGAGAAGACTTTCTTACGAATCCG 254
Query 89 AATGGTGAAAAGATC---AATAGAGATGA--GC-TTG-TGATTTACAGAATCTTATGTCC 141
|| | |||||||| || | ||| || | ||| || |||||||||||||||| ||
Sbjct 255 AA-GAAAAAAAGATCGATAACAAAGACGATCTCGTTGTTG-TTTACAGAATCTTATGCCC 312
Query 142 TATTGATGTTGTTGGAGGTGTTATAGGCAAGAGTGGTAAAGTCATCAA--TGCCATTAGG 199
| || ||| | ||| ||||||||||||| ||||| ||||| || || || ||||||
Sbjct 313 AAGTGGTGTCATGGGAAGTGTTATAGGCAAAAGTGGCAAAGTTATTAACTTG--ATTAGG 370
Query 200 C-ATAACACGAAAGCCAAGATCAAAGTTTTTGAT-CAGTTACATGGTTGCAGCCAAAGAG 257
| | || || | ||| | |||||||||| ||||| | || || ||||| ||| ||||||
Sbjct 371 CAAGAA-ACTAGAGCTAGGATCAAAGTTGTTGATCCTTTTCCA-GGTTGTAGCGAAAGAG 428
Query 258 TCATAACAATCTATTGCTCGGTTAAAGAGAAAAAAGA-A--GAAGAAATCGATTTTA-TG 313
||||||| |||| |||||||||| ||||| ||||| | | || || || | || ||
Sbjct 429 TCATAACGATCTTTTGCTCGGTTTCGGAGAAGAAAGACATTGTTGACATTGAGTATAGTG 488
Query 314 AAGAGCGA-AAC-C-GAGCCTCTT-TGTTGTGCGCAAGATGCTCTTCTTAAAGTTTATGA 369
|| | || || | | ||| || |||| ||| |||| ||||||||||||||| ||||
Sbjct 489 AATTG-GATTACTCTGTTCCT-TTGTGTTCTGCTCAAGCTGCTCTTCTTAAAGTCCATGA 546
Query 370 TGC-AAT-T-G------TAGCTAGTGATGAAGAGAACATTAAGATAGATAGAGATGA--T 418
||| | | | | |||||| || || ||||||| |||||| ||||||||||| |
Sbjct 547 TGCTATTGTGGCTTCTTTAGCTACTGCTGCTGAGAACACTAAGATTGATAGAGATGACTT 606
Query 419 AAGAAGGAATGCCGTCTTTTAGTTCCGTCTAGTCAATCTTTTAGTT-TGATTGGTAAGGC 477
|| | ||||| ||||||||||||||||||||||| | || || || | |||||||| |
Sbjct 607 TAG-A-GAATGTCGTCTTTTAGTTCCGTCTAGTCAGTGTTCTA-TTGTCATTGGTAAATC 663
Query 478 TGGTGAGAACATTAAGAGGATAAGAAGTACAACTCGAGCTAGTGTTAAGGTTGTTTCGAA 537
|||| || ||||||| || ||| ||| |||| |||||| ||||||||||| || ||
Sbjct 664 TGGTTCGATTATTAAGAACATTAGAGGTAGAACTAGAGCTAACGTTAAGGTTGTCTCTAA 723
Query 538 AGATGTTTCGGATCCTTCACATGTTTGTGCCATGGATTATGACAATATAGTTGTGATATC 597
||||||||| |||||||| || |||||||||||||| |||||| || ||| |||||||
Sbjct 724 AGATGTTTCTGATCCTTCTCACACTTGTGCCATGGATTTTGACAACATTGTTATGATATC 783
Query 598 TGGTGAGCCTGAATCCGTGAAGAAAGCGCTTTTCGCTGTTTCTGCAATCCTGTAC-AAGA 656
||||||| |||||||||||||||| || ||||||||||||||||||||| ||||| |||
Sbjct 784 TGGTGAGACTGAATCCGTGAAGAAGGCACTTTTCGCTGTTTCTGCAATCATGTACAAAG- 842
Query 657 TCAATCCTCGAGAACATATTCCTCTAGATTCAACCGGCCAAGATGTTCCAGCTAGTATTA 716
||| |||||||||||| |||||||| ||| |||| | |||||| ||||| ||||||||||
Sbjct 843 TCAGTCCTCGAGAACAGATTCCTCTGGATACAACTGTCCAAGAAGTTCCCGCTAGTATTA 902
Query 717 TAGTTTCATCAGATCTTTCTAATTCTGTCTATCCTCAAACTGGATTT-TACTCAAACCAG 775
|| || | || ||||| ||| | ||||||| ||| | || ||| ||| ||| |||
Sbjct 903 TAATTCCCTCTGATCTGTCT-A-----TCTATCCACAAGCCGG-TTTATACCCAAGTCAG 955
Query 776 GA-TCATATTCTTCAGCAACGAGCGGGTGTTCCGTCATATTTCAATGC-ACTATCTGTA- 832
|| || |||| ||| |||| | ||| | | | || |||| || | |||| |||
Sbjct 956 GATTC-TATT-TTC--CAAC-A-TGGG-G---C-TAATGTTTC-AT-CGTTTATCGGTAC 1002
Query 833 TTTAACTTTCAAGGTTATGCAGAAACCGCTGCGAATCCAATGCC--TGTTTT-TGCTTCT 889
| || ||| ||||||| ||||| ||||| ||||| |||| | |||| |||||||
Sbjct 1003 ACT-AC-CTCAGGGTTATGGAGAAAATGCTGCAAATCCTGTGCCGGTTTTTTCTGCTTCT 1060
Query 890 TCTCTCCCAG-TGACTCATGGTTTTGGTGGGTCTTCCAGGTCAGAAGAGCTGGTTTTAAA 948
|||| || | || |||||||||||||||||||||||| |||||| || ||| | ||||
Sbjct 1061 GCTCTTCCTGTTG-TTCATGGTTTTGGTGGGTCTTCCAGATCAGAAAAGTTGGCTATAAA 1119
Query 949 AG-TGTTGTGCCCTT-TGTCCAATATTACTCGTGTAATCGGGAAAGGAGGGTCAACCATT 1006
|| | || ||| ||| | ||||| ||| |||||| |||||||||||||| | |||||||
Sbjct 1120 AGTTATT-TGCTCTTCT-TCCAAAATTGGTCGTGTTATCGGGAAAGGAGGATTAACCATT 1177
Query 1007 AAAAGAATAAGAGAAGCTAGCGGTTCTTGTATTGAGGTTAATGACTCAAGAACAAAGTGT 1066
|| |||||||| |||| ||||| ||| ||| || ||||||||||| || ||||| |
Sbjct 1178 AAGGGAATAAGACAAGCAAGCGGGTCTCATATCGAAGTTAATGACTCGAGGACAAA---T 1234
Query 1067 GGTGATGATGAGTGTGTTATCATTGTCACTGCTACAGAGTCTCCTGATGATATGAAGTCT 1126
||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1235 CATGATGATGACTGTGTTATCACTGTCACTGCTACAGAGTCTCCTGATGATTTGAAGTCT 1294
Query 1127 ATGGCTGTTGAAGCTGTTCTTCTTCTGCAAGAGTATATCAACGATGA-GAATGCGGAAAA 1185
||||| ||||||||||||||||| || |||||| | || || ||||| || | ||| ||
Sbjct 1295 ATGGCGGTTGAAGCTGTTCTTCTACTTCAAGAGAAAATTAATGATGAAGAC-GAGGACAA 1353
Query 1186 AGTTAAGATGCAACTTCTTGTTTCTTCTAAGGATATT-GGATGTGTTATAGGGAAAAGTG 1244
|||||| |||||||| ||||| |||||||||| || | ||||| |||||||||||||||
Sbjct 1354 AGTTAAAATGCAACTCCTTGTATCTTCTAAGG-TAATAGGATGCATTATAGGGAAAAGTG 1412
Query 1245 GCTCAGTCATAAACGAAATCAGGAAAAGAACCAATGCTAATAT-CTGTATCTCGAAAGGG 1303
||||| |||||| |||||||||||||| || || || |||| | ||||||||||||
Sbjct 1413 GCTCAATCATAAGTGAAATCAGGAAAAGGACAAAGGCCGATATTCA-TATCTCGAAAGGA 1471
Query 1304 AA-AA-AGG---A--TG-----A-CCT--TGTTGAG---GT--AG----CGGGTGAAATC 1339
|| || | | | || | || || |||| || || | |||||| |
Sbjct 1472 AATAATACGCCTAAGTGTGCTGATCCCAATGATGAGCTCGTTGAGATATCTGGTGAAGTA 1531
Query 1340 AGCAGTGTGAGAGACGCTCTCATTCAGATCGTTCTAAGACTTCGAGAGGATGTTTTA-GG 1398
|||| ||||||||| ||||| |||||||| ||||| || |||||||| ||||||||| ||
Sbjct 1532 AGCAATGTGAGAGATGCTCTTATTCAGATAGTTCTGAGGCTTCGAGATGATGTTTTAAGG 1591
Query 1399 AGATAGAGATATTG-TTGCTACTAGTAGGAAACCTCCTGCAAGAACTGATAATTATAGTT 1457
|||||||| | || || | | || | |||||||||||||| |||| ||| | | ||
Sbjct 1592 -GATAGAGAGACTGGTT-C--C-AGGAATCAACCTCCTGCAAGATCTGAGAATAACAATT 1646
Query 1458 TATTCTCGG---GTAGTAGTAATGCCGGT-TATACACTTCCG---TCGTTCATGTCTTC 1509
| ||||| ||||||||||| | ||| | | ||||||| || |||||||||||
Sbjct 1647 TCTTCTCTTCAAGTAGTAGTAATACTGGTCT-TGCACTTCCTCAATCTTTCATGTCTTC 1704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90461382090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5