BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493030
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18350.1 | Symbols: NCED2, ATNCED2 | nine-cis-epoxycarotenoi... 2667 0.0
> AT4G18350.1 | Symbols: NCED2, ATNCED2 | nine-cis-epoxycarotenoid
dioxygenase 2 | chr4:10142650-10144445 FORWARD LENGTH=1796
Length=1796
Score = 2667 bits (1444), Expect = 0.0
Identities = 1675/1788 (94%), Gaps = 9/1788 (1%)
Strand=Plus/Plus
Query 1 AAAACAAAAGCCATGGCTTCTCTTCTTGCAATGTCGAT--GT-GTGGTACTAAAACATGG 57
|||||||||||||||| |||||||||| ||||| |||| || |||||| ||||||||||
Sbjct 11 AAAACAAAAGCCATGGTTTCTCTTCTTACAATGCCGATGAGTGGTGGTATTAAAACATGG 70
Query 58 CCTCAAGCCCAAATTGATTTGGGTTTTAGGCCCATTAAAAGACAGCCGAAGATTATTAAA 117
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 71 CCTCAAGCCCAAATTGATTTGGGTTTTAGGCCCATTAAAAGACAACCGAAGGTTATTAAA 130
Query 118 TGCACGGTGCAGATCGACGTTACGGAATTAACTC-AAAAACGCCAATTATTTACACCCAG 176
|||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||
Sbjct 131 TGCACGGTGCAGATCGACGTAACGGAATTAAC-CAAAAAACGCCAATTATTTACACCCAG 189
Query 177 AATCACCGCTACTCCGCCGCAGCATAATTCTCTCCGGCTAAACATCTTCCAGAAAGCGGC 236
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 190 AACCACCGCTACTCCGCCGCAGCATAATCCTCTCCGGCTAAACATCTTCCAGAAAGCGGC 249
Query 237 GGCTATTGCGATCGACGCGGCTGAGCGGGCGTTGATCTCACGTGAGCAAGATACTCCTCT 296
||| ||||||||||||||||||||||| || || ||||||| ||||||||| |||| ||
Sbjct 250 GGCGATTGCGATCGACGCGGCTGAGCGTGCATTAATCTCACACGAGCAAGATTCTCCACT 309
Query 297 TCCCAAAACCGCCGATCCACGTATTCAGATCGCTGGGAATTATTCTCCGGTGCCGGAATC 356
|||||||||||| ||||||||| ||||||| || ||||||||||| ||||| ||||||||
Sbjct 310 TCCCAAAACCGCTGATCCACGTGTTCAGATTGCCGGGAATTATTCCCCGGTACCGGAATC 369
Query 357 TCCCGTCCGGCGAAATCTCACCGTCGAAGGAACAATCCCTGACTGCATTGACGGAGTTTA 416
| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 370 TTCCGTCCGGCGAAACCTCACCGTCGAAGGAACAATCCCTGACTGCATTGACGGTGTTTA 429
Query 417 TATCCGTAACGGCGCTAATCCGATGTTTGAGCCAACAGCTGGGCACCATTTATTCGACGG 476
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TATCCGTAACGGCGCGAATCCGATGTTTGAGCCAACAGCTGGGCACCATTTATTCGACGG 489
Query 477 AGACGGAATGGTTCACGCTGTTAAAATAACCAACGGTTCAGCTAGCTACGCGTGCCGGTT 536
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 490 AGACGGAATGGTTCACGCAGTTAAAATAACCAACGGTTCAGCTAGCTACGCATGCCGGTT 549
Query 537 TACAAAAACCGAGAGATTGGTTCAAGAAAAACGATTGGGTCGACCGGTTTTCCCGAAAGC 596
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 550 TACAAAAACCGAGAGATTGGTTCAGGAAAAACGATTGGGTCGACCAGTTTTCCCGAAAGC 609
Query 597 AATCGGTGAGCTTCACGGCCACTCGGGAATCGCACGTTTGATGCTGTTTTACGCACGTGG 656
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 610 AATCGGCGAGCTTCACGGTCACTCGGGAATCGCACGTTTGATGCTGTTTTACGCACGTGG 669
Query 657 GCTTTGTGGTCTCATCAACAACCAAAACGGCGTCGGAGTAGCAAATGCCGGTTTGGTTTA 716
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 670 GCTTTGTGGTCTGATCAACAACCAAAACGGCGTCGGAGTAGCAAACGCCGGTTTGGTTTA 729
Query 717 -TTTCAATAATCGGCTTTTAGCTATGTCGGAAGACGATTTTCCGTACCAATTAAAAATAA 775
||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 730 CTTT-AATAACCGGCTTTTAGCTATGTCAGAAGACGATTTACCGTACCAATTAAAAATTA 788
Query 776 CACAAACCGGTGATCTCCAAACCGTTGGACGTTACGATTTCGACAATCAGTTAAAATCCG 835
| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 789 CTCAAACCGGCGATCTCCAAACCGTTGGACGTTACGATTTCGACGGTCAGTTAAAATCCG 848
Query 836 CGATGATTGCCCACCCGAAACTCGACCCGGTTACGAAGGAGCTTCACGCGTTAAGCTACG 895
| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 849 CAATGATAGCTCACCCGAAACTGGACCCGGTTACGAAGGAGCTTCACGCGTTAAGCTACG 908
Query 896 ACGTCGTTAAGAAGCCTTACCTGAAATACTTCAGATTTTCACCGGACGGCGTTAAATCGC 955
||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 909 ACGTCGTTAAGAAACCTTACCTGAAATACTTCAGATTCTCGCCAGACGGCGTTAAATCGC 968
Query 956 CGGAATTGGAGATCCCGCTCGAAACTCCGACGATGATTCACGATTTTGCTATAACGGAGA 1015
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 969 CGGAATTGGAGATCCCGCTCGAAACTCCGACGATGATTCACGATTTCGCTATAACGGAGA 1028
Query 1016 ATTTCGTGGTGATTCCGGATCAACAAGTCGTGTTTAAGCTCGGCGAGATGATTTCCGGTA 1075
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1029 ATTTTGTGGTGATTCCTGATCAACAAGTCGTGTTCAAGCTCGGCGAGATGATTTCCGGTA 1088
Query 1076 AATCTCCGGTGGTTTTCGACGGAGAAAAGGTTTCGCGATTAGGGATAATGCCCAAGGACG 1135
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1089 AATCTCCGGTTGTTTTCGACGGAGAAAAGGTTTCCCGATTGGGGATAATGCCCAAGGACG 1148
Query 1136 CAACGGAAGTTTCTCAGATAATCTGGGTGAATTCGCCGGAGACGTTCTGCTTTCATCTCT 1195
| || |||| ||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 1149 CGACAGAAGCTTCTCAGATAATCTGGGTGAACTCTCCGGAGACGTTCTGTTTTCATCTCT 1208
Query 1196 GGAACGCATGGGAATCGCCGGAGACGGAGGAGATTGTGGTGATCGGATCATGTATGACGC 1255
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1209 GGAATGCATGGGAATCGCCGGAGACGGAGGAGATTGTGGTGATCGGATCGTGTATGTCGC 1268
Query 1256 CGGCGGATTCAATCTTCAACGAGAGAGACGAGAGCTTGAGAAGCGTCTTATCAGAGATCA 1315
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 1269 CGGCGGATTCAATCTTCAACGAGAGAGACGAGAGCTTGAGAAGCGTTTTGTCGGAGATCA 1328
Query 1316 GGATAAACCTCAGGACGCGTGAATCCACGCGCCGTGCATTGTTGGTTAACGAGGATGTTA 1375
||||||||||||| || ||| || ||||||| ||| | |||||||||||||||||||| |
Sbjct 1329 GGATAAACCTCAGAACACGTAAAACCACGCGTCGTTCGTTGTTGGTTAACGAGGATGTAA 1388
Query 1376 ATTTAGAGATCGGTATGGTTAACCGGAACCGGTTAGGGAGAAAAACCCGGTTCGCGTTTT 1435
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1389 ATTTAGAGATTGGTATGGTTAACCGGAACCGGTTAGGAAGAAAAACCCGGTTCGCGTTTT 1448
Query 1436 TGGCTATTGCTGATCCGTGGCCAAAAGTTTCGGGTTTCGCTAAGGTCGATCTTTGCACCG 1495
||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1449 TGGCTATTGCTTATCCTTGGCCAAAAGTTTCCGGTTTCGCTAAGGTCGATCTTTGCACCG 1508
Query 1496 GTGAGATGAAAAAGTATATCTACGGCGGCGAGAAATACGGCGGCGAACCGTTTTTCTTGC 1555
||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 1509 GTGAGATGAAAAAATATATTTACGGCGGTGAGAAATATGGCGGCGAACCGTTTTTCTTGC 1568
Query 1556 CTGG-AAGTTCCGGTAACGGCGAAGAAAATGAAGATGACGGTTATATATTCTGTCATGTT 1614
| || || | |||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1569 CCGGCAACT-CCGGTAACGGCGAAGAAAATGAAGATGACGGTTATATATTTTGTCACGTT 1627
Query 1615 CATGACGAAGaaaaaaaGACGTCGGAACTTCAGATTATTAATGCCGTTAATTTAAATCTT 1674
||||||||||||| |||||| || || |||||||||||||| || ||||||||||| |||
Sbjct 1628 CATGACGAAGAAACAAAGACATCAGAGCTTCAGATTATTAACGCTGTTAATTTAAAGCTT 1687
Query 1675 GAAGCTACGATCAAACTACCGTCAAGAGTACCGTATGGGTTTCATGGCACATTTGTCGAT 1734
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1688 GAAGCTACGATTAAACTACCGTCTAGAGTACCGTATGGGTTTCATGGCACATTTGTGGAT 1747
Query 1735 TCGAGTGAACTCGTTGATCAATTATGATAATTATTGTACTTTTGAATG 1782
|||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1748 TCGAATGAACTCGTTGATCAATTATAATAATTATTGTACTTTTTAATG 1795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88152157020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5