BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493031
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18340.1 | Symbols: | Glycosyl hydrolase superfamily protei... 2056 0.0
> AT4G18340.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr4:10130050-10132061 REVERSE LENGTH=1431
Length=1431
Score = 2056 bits (1113), Expect = 0.0
Identities = 1231/1289 (96%), Gaps = 4/1289 (0%)
Strand=Plus/Plus
Query 1 TCTC-TTCCTCTCTCTTTCTCTTCCTCAACATGACACCAAGAACGTTCACAAGACTTTCC 59
|||| |||| ||| || ||||||||||||||||||| ||||||| |||||||||| ||||
Sbjct 14 TCTCTTTCC-CTCCCTCTCTCTTCCTCAACATGACATCAAGAACATTCACAAGACATTCC 72
Query 60 AATCTCATTCATATTTTTCTCCTGCTTTCTCTCGTTTTCTCAGGGAATATACTAGAAAGA 119
| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 73 AGTCTCATTCATGTTTTTCTCCTGCTTTCTCTCGTTTTCTCAGGGAATATACTACAAACA 132
Query 120 GTAACGTCTCTTGGCATCAATTACGGACAAGTTGGGAATAATTTGCCTTCACCTGATAAA 179
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 133 GTAACGTCTCTTGGCATCAATTACGGACAAGTTGGGAACAATTTGCCTTCACCGGATAAA 192
Query 180 GTCATTAACCTCTTGAGATCTCTAAGGATTACAAAAACAAGAATCTACGACACTAATCCT 239
||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |||
Sbjct 193 GTCATTAACCTCTTGAGATCTTTAAGGATCACAAAAACAAGAATTTACGACACTAACCCT 252
Query 240 CAAATTCTTAGTGCCTTTGCAAATTCAAACATCGAGATCATCGTCACCATCGAAAATCAG 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 CAAATCCTTAGTGCCTTTGCAAATTCAAACATCGAGATCATCGTCACCATCGAAAATCAG 312
Query 300 GTTTTGCCATTATTACAAGATCCTCAACAAGCTATCCAATGGGTGA-ATTCTCGCATCAG 358
||||| |||||| ||||||||||||||||||||| ||||||||| | |||||| ||| |
Sbjct 313 GTTTTACCATTACTACAAGATCCTCAACAAGCTACCCAATGGGT-AGATTCTCACATTAA 371
Query 359 ACCCTATGTTCCGGCCACTAGGATTACCGGAATCATGGTCGGAAACGAGCTTTTCACCGA 418
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 372 ACCCTATGTTCCGGCCACTAGGATTACCGGAATTATGGTCGGAAACGAGCTTTTCACCGA 431
Query 419 CGACGACTCTAGTTTGATAGGATACATGATGCCGGCGATGATCAACATCCACAAAGCCTT 478
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 432 CGACGACTCTAGTTTAATAGGATACATGATGCCGGCGATAATCAACATCCACAAAGCCTT 491
Query 479 GGTTCAATTAGGTTTAGACAGATACATTCAAGTCTCGTCTCCGAGCTCTCTTGCCGTCCT 538
||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 492 GGTCCAATTAGGTTTAGATAGATACATTCAAGTCTCGTCTCCAAGCTCTCTTGCCGTCCT 551
Query 539 TGGTGAATCTTATCCTCCATCAGCCGGAAGTTTCAAGCCGGAGGTTTCCTCCGTCATGCA 598
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 552 CGGTGAATCTTATCCTCCATCTGCCGGAAGTTTCAAGCCGGAGGTTTCCTCCGTGATGCA 611
Query 599 ACAACTTCTAGAATTCTTGGAAGCCACGAAATCTCCTTTTTGGATCAATGCTTACCCTTA 658
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 612 ACAACTTCTAGATTTCTTGGAAGCCACGAAATCTCCTTTTTGGATAAATGCTTACCCTTA 671
Query 659 CTTTGCCTACAAAGATAACCCACAAGAAATCCCAATCGATTACGTTCTGTTCAATCGTAA 718
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||
Sbjct 672 CTTTGCCTACAAAGATAACCCACAAGAAATCCCAGTCGATTACGTTCTATTCAACCGTAA 731
Query 719 CATCGGCATGACCGATCCCAACACGAGACTACACTACGACAACATGATGTACGCTCAAGT 778
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 732 CATCGGCATGACCGATCCCAACACAAGACTACACTACGACAACATGATGTATGCTCAAGT 791
Query 779 AGACGCAGTTGCTTTCGCGGCTGCTAAATTAGGGTACCGTAACATAGAAGTTAGGGTTGC 838
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 792 TGACGCAGTTGCTTTCGCGGCTGCGAAACTAGGGTACCGTAACATAGAAGTTAGGGTTGC 851
Query 839 GGAAACAGGGTGGCCTTCAAAAGGAGATGTCGGAGAGATTGGAGCGTCTCCTTTGAATGC 898
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 852 GGAAACAGGGTGGCCTTCAAAAGGAGATGTCGGAGAGATTGGAGCGTCTCCTGTGAATGC 911
Query 899 TGCCACGTATAACCGGAATCTTATGATGAGGCAATTCGCCGGAGAAGGAACTCCGGCGAG 958
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 912 TGCCACGTATAACCGGAATCTTATGATGAGGCAATTCGCCGGAGAAGGAACTCCAGCGAG 971
Query 959 ACGGAATGCAAGGCTAGATGTTTATATATTTGCATTGTTCAATGAGGATATGAAACCAGG 1018
|||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 972 ACGGAATGCAAGACTCGATGTTTATATATTTGCGTTGTTCAATGAAGATATGAAACCAGG 1031
Query 1019 TCCTACTTCGGAGAAAAACTACGGTATATTCCGACCGGATGGATCATTAGCTTACAATTT 1078
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1032 TCCTACTTCGGAGAAAAACTACGGTATATTCCAACCAGATGGATCATTAGCTTACAATTT 1091
Query 1079 GGGATTCTCTACAATGTCGACAACGACGGCGAATTCAGAATCTGTCACTTATTCATCCTC 1138
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1092 GGGATTCTCTACAATGTCGACAACGACGGCAAATTCAGAATCTGTCACTTATTCATCCTC 1151
Query 1139 TGCCACTAAGGCAAAGAGGAGCTTGGAATATTGGACAATTTTGATATTGGCGATGGTTCA 1198
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1152 TGCCACTAAGGCAAAGAGGAGCTTGGAGTATTGGACAATTTTGATATTGGCGATGGTTCA 1211
Query 1199 AGTTGTAATGTTGAGACTATTTTAGAGGGAAAGTTATTGAGAATATAATAACGCGATTGG 1258
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1212 AGTTGTAATGTTGAGACTATTTTAGAGGAAAAGTTATTGACAATATAATAACGCGATTGT 1271
Query 1259 TTAGGATATTTATGTAAACAATTTAATTA 1287
|||||||||||||||||||||||||||||
Sbjct 1272 TTAGGATATTTATGTAAACAATTTAATTA 1300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68021738475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5