BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493032

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G18335.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   678    0.0  


> AT4G18335.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 30201 Blast hits to 
17322 proteins in 780 species: Archae - 12; Bacteria - 1396; 
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; 
Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10128869-10129363 
FORWARD LENGTH=495
Length=495

 Score =  678 bits (367),  Expect = 0.0
 Identities = 458/498 (92%), Gaps = 21/498 (4%)
 Strand=Plus/Plus

Query  1    ATGGATGATTTGGTTTTGATGAAACAGAGTCTTCTAAAAAGcttcatcgtctctcttatt  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAAGATTTGGTTTTGATGAAACAGAGTCTTCTAAAAAGCTTCATCGTCTCTCTTATT  60

Query  61   ctcactctcgtcttcctcatctcaccatcatcatcatcttcgaatcaAGAAACAAGAGTA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTCACTCTCGTCTTCCTCATCTCACCATCATCATCATCTTCGAATCAAGAAACAAGAGTA  120

Query  121  TCATCAACACAAAAGACGGAAGCTTATCTCAACGGCAATGAATCACCGCACCAACTCGTG  180
            |||||||||||||| ||||||||||||||||||||  | |||||||||||||||||||| 
Sbjct  121  TCATCAACACAAAAAACGGAAGCTTATCTCAACGGTTACGAATCACCGCACCAACTCGTC  180

Query  181  TACATCAAGAAAACGACGCCGTTTATCTTGAACCGGCGGTTGCAACGAAACCACCACCAC  240
            ||||||||||||||||| |||||||||||||||| ||||||||||||| || |  |||||
Sbjct  181  TACATCAAGAAAACGACACCGTTTATCTTGAACCAGCGGTTGCAACGAGAC-A--ACCAC  237

Query  241  CGTCGTCGTCGTTACGATCACCACTACTACTTCTACTATCGACATACTCTTCGTC---GC  297
            ||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||   ||
Sbjct  238  CGTCGTCGTCGTTACAATCACCAATACTACTACTACTATCGACATACTCTTCGTCATCGC  297

Query  298  CGTG--CTG-A-C-T----------ACTTCAAGATGATGGCCAAGAAGAGTAACGGTTTA  342
            ||||  ||  | | |          |||||||||||||||||||||||| ||||||||||
Sbjct  298  CGTGGTCTTCATCATCGTGCTGGCTACTTCAAGATGATGGCCAAGAAGAATAACGGTTTA  357

Query  343  AACCGTCCGGTTCGACCGGATACTTTCTCCGTTATGCTTCCCAAAGGATTTGTACCTCCT  402
            |||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||
Sbjct  358  AACCGTCCGGTTCGACAGGATACTTTCTCGGTTATGCTTCCCAAAGGATTCGTACCTCCT  417

Query  403  TCCGGTTCATCTCCATGCCATAACCAGAACCCTAATTCTGCTACCACTCTCTTTTGCGAT  462
            |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  418  TCCGGTTCATCTCCATGCCATAACCAGAACCCTAATTCCGCTACTACTCTCTTTTGCGAT  477

Query  463  CTTTCTACACAACCCTAG  480
            ||||||||||||||||||
Sbjct  478  CTTTCTACACAACCCTAG  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22856536885


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5