BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493034
Length=1624
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18330.2 | Symbols: | Translation elongation factor EF1A/in... 2543 0.0
AT2G18720.1 | Symbols: | Translation elongation factor EF1A/in... 1435 0.0
> AT4G18330.2 | Symbols: | Translation elongation factor EF1A/initiation
factor IF2gamma family protein | chr4:10126579-10128734
FORWARD LENGTH=1659
Length=1659
Score = 2543 bits (1377), Expect = 0.0
Identities = 1546/1628 (95%), Gaps = 10/1628 (1%)
Strand=Plus/Plus
Query 1 AAAGCGAGACTTTACAGTACGCAGATTAGTCGGAATCGACTGAGAATCGAAATTATTGTG 60
||| |||||||||| ||||| ||| || |||||||||||||||| |||||||||||||||
Sbjct 3 AAATCGAGACTTTATAGTACTCAGGTTTGTCGGAATCGACTGAGTATCGAAATTATTGTG 62
Query 61 GTGTTTTGTGAACAGAAACCAAGCAGGATAAAAGATGGTTCAACAATCTGTGTTAATTTC 120
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 63 GTGTTTTGTGAACAGAAACCAAGCAGGATTAAAGATGGTT---CAATCTGTGTTAATTTC 119
Query 121 GCGTAACAAGGGTTTGGCTGAGCAAGATCTAAGTAAACTTGATGTAACAAAGTTACATCC 180
|||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct 120 GCGTAACAAGGGTTTGGCGGAGCAAGATCTAACTAAGCTTGATGTAACAAAGTTACATCC 179
Query 181 TCTGTCTCCCGAGGTCATTTCTCGCCAAGCGACCATAAATATAGGAACCATTGGCCATGT 240
||||| ||| || ||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 180 TCTGTTTCCTGAAGTCATTTCTCGCCAAGCAACCATAAATATCGGAACCATTGGTCATGT 239
Query 241 CGCACACGGTAAATCGACTATTGTGAAAGCTATCTCTGGTGTTCAGACTGTGCGTTTTAA 300
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGCTCACGGTAAATCGACTATAGTGAAAGCTATCTCTGGTGTTCAGACTGTGCGTTTTAA 299
Query 301 GAATGAACTGGAGCGTAACATTACCATTAAACTTGGTTATGCAAATGCAAAGATTTACAA 360
||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 GAATGAATTAGAGCGTAACATTACCATTAAGCTTGGTTATGCAAATGCAAAGATTTACAA 359
Query 361 ATGTGAGGATGACAAGTGCCCTAGACCAATGTGTTACAAGTCTTATGGGAGTGGAAAAGA 420
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 360 GTGTGAGGATGACAAGTGCCCTAGACCAATGTGCTACAAGTCATATGGGAGTGGAAAAGA 419
Query 421 AGACAACCCGAA-TTGTGATGTCCCTGGATTTGAGAAATGCAAGATGAAACTACTGAGAC 479
||||||||| || |||||||||||| ||||||||||| |||||||||| ||||| |||||
Sbjct 420 AGACAACCC-AACTTGTGATGTCCCCGGATTTGAGAATTGCAAGATGACACTACGGAGAC 478
Query 480 ATGTCTCATTTGTCGATTGTCCGGGACATGATATTCTTATGGCGACAATGCTCAATGGAG 539
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATGTCTCATGTGTCGATTGTCCGGGACATGATATTCTTATGGCGACAATGCTCAATGGAG 538
Query 540 CAGCAATCATGGATGGTGCTTTACTTCTAATTGCTGCTAATGAGACTTGTCCACAACCAC 599
|||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 539 CAGCAATCGTGGATGGTGCTTTACTTCTAATTGCTGCTAACGAGAGTTGTCCACAACCAC 598
Query 600 AAACTGCTGAACATCTTGCTTCTGTTGATATGATGCGTCTTAAGCATATCATAATCCTTC 659
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 AAACCGCTGAACATCTTGCTTCTGTTGATATGATGCGCCTTAAGCATATCATAATCCTTC 658
Query 660 AGAACAAGATTGATCTCATTAATGAGAAAGCCGCCACTGAACAGCACGAGGCGATTCAGA 719
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 659 AGAACAAGATTGATCTCATTAATGAGAAAGCCGCCACTGAACAGCACGAGGCTATTCAGA 718
Query 720 AATTTATAACGAACACAAATGCCGAGGATGCACCTATAGTTCCTGTCTCAGCACAACTTA 779
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 719 AATTTATAACGAACACGAATGCTGAGGATGCACCTATAGTTCCTGTCTCAGCACAACTGA 778
Query 780 AATACAACATTGATGTTGTGAGTGAATACATTGTCAAGAAGATACCAATCCCTGTGAGAG 839
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 779 AATACAACATTGATGTTGTGAGTGAATACATTGTCAAGAAGATTCCAATCCCTGTGAGAG 838
Query 840 ACTTTGTGTCACCGCCAAAGATGATTGTGATTCGTTCTTTCGATGTCAATAAACCTGGCT 899
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACTTTGTGTCACCACCAAAGATGATTGTGATTCGTTCTTTCGATGTCAATAAACCTGGCT 898
Query 900 CTGCTGGTCATGAAATGAAAGGTGGAGTTGCTGGTGGAAGTATCCTCCAGGGAGTTTTGA 959
| || |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 899 CGGCGGGTCATGAAATGAAAGGTGGTGTTGCTGGTGGAAGTATCCTCCAGGGTGTTTTGA 958
Query 960 AAGTGAACCAACTGATTGAAATTAGACCTGGTATCACTGGCAAAGATGAACTTGGAAACT 1019
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 959 AAGTGAACCAACTGATTGAAATTAGACCTGGTATCACTGGCAAAGATGAGCATGGAAACT 1018
Query 1020 CAAAATGCACTCCAATTTACTCCCGTATAACTTCACTTTACGCGGAACAGAACGAGCTTC 1079
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1019 CAAAATGCACTCCAATTTACTCGCGTATAACTTCACTATACGCGGAACAGAACGAGCTTC 1078
Query 1080 AGTTCGCTGTCCCGGGAGGTCTAATTGGAGTTGGAACAACCATGGACCCTACGCTTACGC 1139
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1079 AGTTTGCTGTACCGGGAGGTCTAATCGGAGTTGGAACAACCATGGACCCTACGCTTACGC 1138
Query 1140 GTGCTGATAGGTTGGTTGGTCAAGTCCTTGGTGAAATGGGAACTCTCCCTGATGTCTTTG 1199
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1139 GTGCTGATAGGTTGGTTGGTCAAGTCCTTGGTGAAATGGGTACTCTCCCTGACGTCTTTG 1198
Query 1200 TTGAGCTTGAAGTAAGTTTCCAGCTTCTGACTCGTCTCATTGGAGTGAGGACAAAGGAAA 1259
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TTGAGCTTGAAGTAAGTTACCAGCTTCTGACTCGTCTCATTGGAGTGAGGACAAAGGAAA 1258
Query 1260 AAGAGAAGCAAATGAAAGTGTCAAAGCTAACCAAAGAAGAGATACTAATGGTTAACATCG 1319
|||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 1259 AAGAGAAGCAAATGAAAGTGTCAAAGCTAACCAAAGAAGAGATATTGATGGTGAACATCG 1318
Query 1320 GGTCCATGTCTACAGGAGCTAAGGTTATTGGAGTGAAGAAAGATATGGTGAAACTTCAAC 1379
|||| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1319 GGTCTATGTCTACGGGAGCTAAGGTTATTGGAGTCAAGAAAGATATGGTGAAACTCCAAC 1378
Query 1380 TGACGTCTCCGGTGTGTACCACCATAGGAGAGAAGGTGGCTTTAAGCCGCCGTGTCGATA 1439
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1379 TGACGTCTCCGGTGTGTACCACCATAGGAGAGAAGGTTGCTTTAAGCCGACGTGTCGATA 1438
Query 1440 GGCATTGGCGTCTTATTGGTAAGGGTCAGATTCTTGCTGGAACCACCATCGATGTTCCTC 1499
||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1439 GGCATTGGCGTCTAATTGGTAAGGGTCAGATTATGGCTGGAACCACCATCGATGTTCCTC 1498
Query 1500 CTCCTCCTTTCTAATGAGGTAGTGATGAAtttttt-t-tt-tttGCATTCAAAAATAATA 1556
||||||||||||||||| |||||||||| |||||| | || ||||||||||||||||||
Sbjct 1499 CTCCTCCTTTCTAATGAAGTAGTGATGAGTTTTTTATATTGTTTGCATTCAAAAATAATT 1558
Query 1557 AACATGTGAACCTTTGTATGTTCGATCACTTTCTTTCGACTTCAATATAAAACTATATTC 1616
|||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1559 AACATGTG--CCTTTGTATGTTTAATCACTTTCTTTCGACTACAATATAAAACTATATTC 1616
Query 1617 ATATTTAA 1624
||||||||
Sbjct 1617 ATATTTAA 1624
> AT2G18720.1 | Symbols: | Translation elongation factor EF1A/initiation
factor IF2gamma family protein | chr2:8114920-8116811
REVERSE LENGTH=1465
Length=1465
Score = 1435 bits (777), Expect = 0.0
Identities = 1217/1425 (85%), Gaps = 48/1425 (3%)
Strand=Plus/Plus
Query 105 AATCTGT-GTTAATTTCG-CGTAACAAGGGTTTGGCTGAGCAAGATCTAAGTAAACTTGA 162
||||||| | |||| ||| | |||||||| || ||||| ||||||||||||||||||||
Sbjct 57 AATCTGTCG-TAATGTCGAAG-AACAAGGGCTTAGCTGAACAAGATCTAAGTAAACTTGA 114
Query 163 TGTAACAAAGTTACATCCTCTGTCTCCCGAGGTCATTTCTCGCCAAGCGACCATAAATAT 222
|||| | || | |||||||| ||||| |||||||| ||||| ||||| ||||| || ||
Sbjct 115 TGTAGCTCAGCTGCATCCTCTCTCTCCTGAGGTCATCTCTCGTCAAGCCACCATTAACAT 174
Query 223 AGGAACCATTGGCCATGTCGCACACGGTAAATCGACTATTGTGAAAGCTATCTCTGGTGT 282
||||||||||||||||||||| ||||| |||||||| || |||||||| | || |||||
Sbjct 175 AGGAACCATTGGCCATGTCGCTCACGGGAAATCGACAATCGTGAAAGCCGTTTCCGGTGT 234
Query 283 TCAGACTGTGC-GTTTTAAGAATGAACTGGAGCGTAACATTACCATTAAACTTGGTTATG 341
|| ||||| | || |||| |||| ||||||||||||||||||||||||||||||| |
Sbjct 235 GCACACTGT-CAAATTCAAGAGTGAATTGGAGCGTAACATTACCATTAAACTTGGTTACG 293
Query 342 CAAATGCAAAGATTTACAAATGTGAGGATGACAAGTGCCCTAGACCAATGT-G-TTACAA 399
|||| |||||||||||||||||||| | | || ||||||||||| | || | |||||
Sbjct 294 CAAACGCAAAGATTTACAAATGTGA--A--A-AA-TGCCCTAGACC-A-GTAGCCTACAA 345
Query 400 GTCTTAT-GGGAGTGGAAAAGAAGACAACCCGAA-TTGTGATGTCCCTGGATTTGAGAAA 457
||||| | |||||||| |||||||||||||| || |||||||||| ||||| ||||||
Sbjct 346 GTCTT-TCGGGAGTGGCAAAGAAGACAACCC-AAGTTGTGATGTCTCTGGACATGAGAAG 403
Query 458 TGCAAGATGAAACTACTGAGACATGTCTCATTTGTCGATTGTCCGGGACATGATATTCTT 517
| ||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct 404 TACAAGATGAAACTACTAAGACATGTCTCATTTGTTGATTGCCCGGGACACGATATCCTA 463
Query 518 ATGGCGACAATGCTCAATGGAGCAGCAATCATGGATGGTGCTTTACTTCTAATTGCTGCT 577
|||||||||||||| ||||||||||| || ||||||||||||||||| | ||||||||
Sbjct 464 ATGGCGACAATGCTGAATGGAGCAGCGATTATGGATGGTGCTTTACTAATCATTGCTGCG 523
Query 578 AATGAGACTTGTCCACAACCACAAACTGCTGAACATCTTGCTTCTGTTGATATGATGCGT 637
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 524 AATGAGACATGTCCACAACCACAAACAGCTGAACATCTTGCTTCTGTTGATATGATGCAT 583
Query 638 CTTAA-GCATATCATAATCCTTCAGAACAAGATTGATCTCATT-AATGAGAAA-GCCGCC 694
||||| | ||||||||||| |||||||||||||||||||||| || || ||| | ||
Sbjct 584 CTTAAAG-ATATCATAATCATTCAGAACAAGATTGATCTCATCCAA-GA-AAACGAGGCT 640
Query 695 ACTGAACAGCACGAGG-CGATTCAGAAATTTATAACGAACACAAATGCCGA-GGATGCAC 752
| | |||||||||||| | || |||| ||||||||||||||| ||||| || || ||| |
Sbjct 641 ATTAAACAGCACGAGGAC-ATCCAGAGATTTATAACGAACACGAATGCGGAAGG-TGCTC 698
Query 753 CTATAGTTCCTGTCTCAGCACAACTTAAATACAACATTGATGTTGTGAGTGAATACATTG 812
||||||||||||||||||| ||||| ||||||||||| |||||| || |||| |||||||
Sbjct 699 CTATAGTTCCTGTCTCAGCGCAACTGAAATACAACATCGATGTTTTGTGTGAGTACATTG 758
Query 813 TCAAGAAGATACCAATCCCTGTGAGAGACTTTGTGTCACCGCCAAAGA-TGATTGTGATT 871
|||||||||| ||| |||||||||| || ||||||||||| |||| || |||||||||||
Sbjct 759 TCAAGAAGATTCCACTCCCTGTGAGGGATTTTGTGTCACCTCCAA-GAATGATTGTGATT 817
Query 872 CGTTCTTTCGATGTCAATAAACCTGGCTCTGCTGGTCATGAAATGAAAGGTGGAGTTGCT 931
|||||||| |||||||||||||||||||||| | | ||| |||||||||||||||||
Sbjct 818 CGTTCTTTTGATGTCAATAAACCTGGCTCTGATTATGATGGTATGAAAGGTGGAGTTGCA 877
Query 932 GGTGGAAGTATCCTCCAGGGAGTTTTGAAAGTGAACCA-ACTGATTGAAATTAGACCTGG 990
||||| |||||||| ||||| |||||||| ||| || | | || || || ||||||||
Sbjct 878 GGTGGGAGTATCCTTCAGGGTGTTTTGAAGGTGGGGCATA-TAATAGAGATAAGACCTGG 936
Query 991 TATCACTGGCAAAGATGA-ACTTGGAAACTCAAAATGCACTCCAATTTACTCCCGTATAA 1049
|||||| | |||||||| | | ||| || | ||||||||||| |||||| | |||||||
Sbjct 937 AATCACTAGAAAAGATGAGAAT-GGAGACACTAAATGCACTCCCATTTACACGCGTATAA 995
Query 1050 CTTCACTT-TACGCGGAACAGAACGAGCTTCAGTTCGCTGTCCCGGGAGGTCTAATTGGA 1108
||||| || |||||||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 996 CTTCA-TTGTACGCGGAACAGAACGAGCTTCAGTTTGCTGTCCCGGGAGGTTTGATTGGA 1054
Query 1109 GTTGGAACAACCATGGACCCTACGCTTACGCGTGCTGATAGGTTGGTTGGTCAAGTCCTT 1168
|||| |||| |||||| |||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1055 ATTGGGACAAGCATGGATCCTACGCTTACGCGTGGTGATAGGTTAGTTGGTCAAGTCCTT 1114
Query 1169 GGTGAAATGGGAACTCTCCCTGATGTCTTTGTTGAGCTTGAAGTAAGTTTCCAGCTTCTG 1228
|||||||| || |||||||||||||||| |||||| |||||||| |||||||||||||||
Sbjct 1115 GGTGAAATAGGTACTCTCCCTGATGTCTATGTTGAACTTGAAGTGAGTTTCCAGCTTCTG 1174
Query 1229 ACTCGTCTCATTGGAGTGAGGACAAAGGAAAAAGAGAAGCAAATGAAAGTGTCAAAGCTA 1288
|| |||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||
Sbjct 1175 ACACGTCTCATTGGAGTGAAGACAAAGGAAACAGAGAGGCAAATGAGAGTGTCAAAGCTA 1234
Query 1289 ACCAAAGAAGAGATACTAATGGTT-AACATCGGGTCCATGTCTACAGGAGCTAAGGTTAT 1347
||| | ||||||||| ||| || || ||||| || |||||||| ||||||| ||||||
Sbjct 1235 GTCAAGGGAGAGATACTGATG-TTGAATATCGGATCGATGTCTACGGGAGCTATGGTTAT 1293
Query 1348 TGGAGTGAAGAAAGATATGGTGAAACTTCAA-CTGACGTCTCCG-GTGTGTACCACCATA 1405
|||||| |||||||||||||||||| || || ||||| |||| ||||| |||| |||
Sbjct 1294 TGGAGTAAAGAAAGATATGGTGAAAGTT-AATCTGACA-CTCCCTGTGTGCACCAGCATT 1351
Query 1406 GGAGAGAAGGTGGCTTTAAGCCGCCGTGTCGATAGGCATTGGCGTCTT-ATTGGTAAG-G 1463
|||||||| |||||| |||| |||||||| ||||||||||||||| || || ||| | |
Sbjct 1352 GGAGAGAAAGTGGCTATAAGTCGCCGTGTGGATAGGCATTGGCGT-TTGATCGGTC-GCG 1409
Query 1464 GTCAGATTCTTGCTGGAACCACCATCGATGTTCCTCCTCCTCCTT 1508
|||||||| |||||||||||||| | | ||| |||||||||
Sbjct 1410 GTCAGATTGAGGCTGGAACCACCATTTTTATCCCTTCTCCTCCTT 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80220470910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5