BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493034 Length=1624 Score E Sequences producing significant alignments: (Bits) Value AT4G18330.2 | Symbols: | Translation elongation factor EF1A/in... 2543 0.0 AT2G18720.1 | Symbols: | Translation elongation factor EF1A/in... 1435 0.0 > AT4G18330.2 | Symbols: | Translation elongation factor EF1A/initiation factor IF2gamma family protein | chr4:10126579-10128734 FORWARD LENGTH=1659 Length=1659 Score = 2543 bits (1377), Expect = 0.0 Identities = 1546/1628 (95%), Gaps = 10/1628 (1%) Strand=Plus/Plus Query 1 AAAGCGAGACTTTACAGTACGCAGATTAGTCGGAATCGACTGAGAATCGAAATTATTGTG 60 ||| |||||||||| ||||| ||| || |||||||||||||||| ||||||||||||||| Sbjct 3 AAATCGAGACTTTATAGTACTCAGGTTTGTCGGAATCGACTGAGTATCGAAATTATTGTG 62 Query 61 GTGTTTTGTGAACAGAAACCAAGCAGGATAAAAGATGGTTCAACAATCTGTGTTAATTTC 120 ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 63 GTGTTTTGTGAACAGAAACCAAGCAGGATTAAAGATGGTT---CAATCTGTGTTAATTTC 119 Query 121 GCGTAACAAGGGTTTGGCTGAGCAAGATCTAAGTAAACTTGATGTAACAAAGTTACATCC 180 |||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| Sbjct 120 GCGTAACAAGGGTTTGGCGGAGCAAGATCTAACTAAGCTTGATGTAACAAAGTTACATCC 179 Query 181 TCTGTCTCCCGAGGTCATTTCTCGCCAAGCGACCATAAATATAGGAACCATTGGCCATGT 240 ||||| ||| || ||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 180 TCTGTTTCCTGAAGTCATTTCTCGCCAAGCAACCATAAATATCGGAACCATTGGTCATGT 239 Query 241 CGCACACGGTAAATCGACTATTGTGAAAGCTATCTCTGGTGTTCAGACTGTGCGTTTTAA 300 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 240 CGCTCACGGTAAATCGACTATAGTGAAAGCTATCTCTGGTGTTCAGACTGTGCGTTTTAA 299 Query 301 GAATGAACTGGAGCGTAACATTACCATTAAACTTGGTTATGCAAATGCAAAGATTTACAA 360 ||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 300 GAATGAATTAGAGCGTAACATTACCATTAAGCTTGGTTATGCAAATGCAAAGATTTACAA 359 Query 361 ATGTGAGGATGACAAGTGCCCTAGACCAATGTGTTACAAGTCTTATGGGAGTGGAAAAGA 420 |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 360 GTGTGAGGATGACAAGTGCCCTAGACCAATGTGCTACAAGTCATATGGGAGTGGAAAAGA 419 Query 421 AGACAACCCGAA-TTGTGATGTCCCTGGATTTGAGAAATGCAAGATGAAACTACTGAGAC 479 ||||||||| || |||||||||||| ||||||||||| |||||||||| ||||| ||||| Sbjct 420 AGACAACCC-AACTTGTGATGTCCCCGGATTTGAGAATTGCAAGATGACACTACGGAGAC 478 Query 480 ATGTCTCATTTGTCGATTGTCCGGGACATGATATTCTTATGGCGACAATGCTCAATGGAG 539 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 ATGTCTCATGTGTCGATTGTCCGGGACATGATATTCTTATGGCGACAATGCTCAATGGAG 538 Query 540 CAGCAATCATGGATGGTGCTTTACTTCTAATTGCTGCTAATGAGACTTGTCCACAACCAC 599 |||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 539 CAGCAATCGTGGATGGTGCTTTACTTCTAATTGCTGCTAACGAGAGTTGTCCACAACCAC 598 Query 600 AAACTGCTGAACATCTTGCTTCTGTTGATATGATGCGTCTTAAGCATATCATAATCCTTC 659 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 599 AAACCGCTGAACATCTTGCTTCTGTTGATATGATGCGCCTTAAGCATATCATAATCCTTC 658 Query 660 AGAACAAGATTGATCTCATTAATGAGAAAGCCGCCACTGAACAGCACGAGGCGATTCAGA 719 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 659 AGAACAAGATTGATCTCATTAATGAGAAAGCCGCCACTGAACAGCACGAGGCTATTCAGA 718 Query 720 AATTTATAACGAACACAAATGCCGAGGATGCACCTATAGTTCCTGTCTCAGCACAACTTA 779 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | Sbjct 719 AATTTATAACGAACACGAATGCTGAGGATGCACCTATAGTTCCTGTCTCAGCACAACTGA 778 Query 780 AATACAACATTGATGTTGTGAGTGAATACATTGTCAAGAAGATACCAATCCCTGTGAGAG 839 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 779 AATACAACATTGATGTTGTGAGTGAATACATTGTCAAGAAGATTCCAATCCCTGTGAGAG 838 Query 840 ACTTTGTGTCACCGCCAAAGATGATTGTGATTCGTTCTTTCGATGTCAATAAACCTGGCT 899 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 ACTTTGTGTCACCACCAAAGATGATTGTGATTCGTTCTTTCGATGTCAATAAACCTGGCT 898 Query 900 CTGCTGGTCATGAAATGAAAGGTGGAGTTGCTGGTGGAAGTATCCTCCAGGGAGTTTTGA 959 | || |||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 899 CGGCGGGTCATGAAATGAAAGGTGGTGTTGCTGGTGGAAGTATCCTCCAGGGTGTTTTGA 958 Query 960 AAGTGAACCAACTGATTGAAATTAGACCTGGTATCACTGGCAAAGATGAACTTGGAAACT 1019 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 959 AAGTGAACCAACTGATTGAAATTAGACCTGGTATCACTGGCAAAGATGAGCATGGAAACT 1018 Query 1020 CAAAATGCACTCCAATTTACTCCCGTATAACTTCACTTTACGCGGAACAGAACGAGCTTC 1079 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 1019 CAAAATGCACTCCAATTTACTCGCGTATAACTTCACTATACGCGGAACAGAACGAGCTTC 1078 Query 1080 AGTTCGCTGTCCCGGGAGGTCTAATTGGAGTTGGAACAACCATGGACCCTACGCTTACGC 1139 |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1079 AGTTTGCTGTACCGGGAGGTCTAATCGGAGTTGGAACAACCATGGACCCTACGCTTACGC 1138 Query 1140 GTGCTGATAGGTTGGTTGGTCAAGTCCTTGGTGAAATGGGAACTCTCCCTGATGTCTTTG 1199 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 1139 GTGCTGATAGGTTGGTTGGTCAAGTCCTTGGTGAAATGGGTACTCTCCCTGACGTCTTTG 1198 Query 1200 TTGAGCTTGAAGTAAGTTTCCAGCTTCTGACTCGTCTCATTGGAGTGAGGACAAAGGAAA 1259 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 TTGAGCTTGAAGTAAGTTACCAGCTTCTGACTCGTCTCATTGGAGTGAGGACAAAGGAAA 1258 Query 1260 AAGAGAAGCAAATGAAAGTGTCAAAGCTAACCAAAGAAGAGATACTAATGGTTAACATCG 1319 |||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| Sbjct 1259 AAGAGAAGCAAATGAAAGTGTCAAAGCTAACCAAAGAAGAGATATTGATGGTGAACATCG 1318 Query 1320 GGTCCATGTCTACAGGAGCTAAGGTTATTGGAGTGAAGAAAGATATGGTGAAACTTCAAC 1379 |||| |||||||| |||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 1319 GGTCTATGTCTACGGGAGCTAAGGTTATTGGAGTCAAGAAAGATATGGTGAAACTCCAAC 1378 Query 1380 TGACGTCTCCGGTGTGTACCACCATAGGAGAGAAGGTGGCTTTAAGCCGCCGTGTCGATA 1439 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1379 TGACGTCTCCGGTGTGTACCACCATAGGAGAGAAGGTTGCTTTAAGCCGACGTGTCGATA 1438 Query 1440 GGCATTGGCGTCTTATTGGTAAGGGTCAGATTCTTGCTGGAACCACCATCGATGTTCCTC 1499 ||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 1439 GGCATTGGCGTCTAATTGGTAAGGGTCAGATTATGGCTGGAACCACCATCGATGTTCCTC 1498 Query 1500 CTCCTCCTTTCTAATGAGGTAGTGATGAAtttttt-t-tt-tttGCATTCAAAAATAATA 1556 ||||||||||||||||| |||||||||| |||||| | || |||||||||||||||||| Sbjct 1499 CTCCTCCTTTCTAATGAAGTAGTGATGAGTTTTTTATATTGTTTGCATTCAAAAATAATT 1558 Query 1557 AACATGTGAACCTTTGTATGTTCGATCACTTTCTTTCGACTTCAATATAAAACTATATTC 1616 |||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 1559 AACATGTG--CCTTTGTATGTTTAATCACTTTCTTTCGACTACAATATAAAACTATATTC 1616 Query 1617 ATATTTAA 1624 |||||||| Sbjct 1617 ATATTTAA 1624 > AT2G18720.1 | Symbols: | Translation elongation factor EF1A/initiation factor IF2gamma family protein | chr2:8114920-8116811 REVERSE LENGTH=1465 Length=1465 Score = 1435 bits (777), Expect = 0.0 Identities = 1217/1425 (85%), Gaps = 48/1425 (3%) Strand=Plus/Plus Query 105 AATCTGT-GTTAATTTCG-CGTAACAAGGGTTTGGCTGAGCAAGATCTAAGTAAACTTGA 162 ||||||| | |||| ||| | |||||||| || ||||| |||||||||||||||||||| Sbjct 57 AATCTGTCG-TAATGTCGAAG-AACAAGGGCTTAGCTGAACAAGATCTAAGTAAACTTGA 114 Query 163 TGTAACAAAGTTACATCCTCTGTCTCCCGAGGTCATTTCTCGCCAAGCGACCATAAATAT 222 |||| | || | |||||||| ||||| |||||||| ||||| ||||| ||||| || || Sbjct 115 TGTAGCTCAGCTGCATCCTCTCTCTCCTGAGGTCATCTCTCGTCAAGCCACCATTAACAT 174 Query 223 AGGAACCATTGGCCATGTCGCACACGGTAAATCGACTATTGTGAAAGCTATCTCTGGTGT 282 ||||||||||||||||||||| ||||| |||||||| || |||||||| | || ||||| Sbjct 175 AGGAACCATTGGCCATGTCGCTCACGGGAAATCGACAATCGTGAAAGCCGTTTCCGGTGT 234 Query 283 TCAGACTGTGC-GTTTTAAGAATGAACTGGAGCGTAACATTACCATTAAACTTGGTTATG 341 || ||||| | || |||| |||| ||||||||||||||||||||||||||||||| | Sbjct 235 GCACACTGT-CAAATTCAAGAGTGAATTGGAGCGTAACATTACCATTAAACTTGGTTACG 293 Query 342 CAAATGCAAAGATTTACAAATGTGAGGATGACAAGTGCCCTAGACCAATGT-G-TTACAA 399 |||| |||||||||||||||||||| | | || ||||||||||| | || | ||||| Sbjct 294 CAAACGCAAAGATTTACAAATGTGA--A--A-AA-TGCCCTAGACC-A-GTAGCCTACAA 345 Query 400 GTCTTAT-GGGAGTGGAAAAGAAGACAACCCGAA-TTGTGATGTCCCTGGATTTGAGAAA 457 ||||| | |||||||| |||||||||||||| || |||||||||| ||||| |||||| Sbjct 346 GTCTT-TCGGGAGTGGCAAAGAAGACAACCC-AAGTTGTGATGTCTCTGGACATGAGAAG 403 Query 458 TGCAAGATGAAACTACTGAGACATGTCTCATTTGTCGATTGTCCGGGACATGATATTCTT 517 | ||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| || Sbjct 404 TACAAGATGAAACTACTAAGACATGTCTCATTTGTTGATTGCCCGGGACACGATATCCTA 463 Query 518 ATGGCGACAATGCTCAATGGAGCAGCAATCATGGATGGTGCTTTACTTCTAATTGCTGCT 577 |||||||||||||| ||||||||||| || ||||||||||||||||| | |||||||| Sbjct 464 ATGGCGACAATGCTGAATGGAGCAGCGATTATGGATGGTGCTTTACTAATCATTGCTGCG 523 Query 578 AATGAGACTTGTCCACAACCACAAACTGCTGAACATCTTGCTTCTGTTGATATGATGCGT 637 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 524 AATGAGACATGTCCACAACCACAAACAGCTGAACATCTTGCTTCTGTTGATATGATGCAT 583 Query 638 CTTAA-GCATATCATAATCCTTCAGAACAAGATTGATCTCATT-AATGAGAAA-GCCGCC 694 ||||| | ||||||||||| |||||||||||||||||||||| || || ||| | || Sbjct 584 CTTAAAG-ATATCATAATCATTCAGAACAAGATTGATCTCATCCAA-GA-AAACGAGGCT 640 Query 695 ACTGAACAGCACGAGG-CGATTCAGAAATTTATAACGAACACAAATGCCGA-GGATGCAC 752 | | |||||||||||| | || |||| ||||||||||||||| ||||| || || ||| | Sbjct 641 ATTAAACAGCACGAGGAC-ATCCAGAGATTTATAACGAACACGAATGCGGAAGG-TGCTC 698 Query 753 CTATAGTTCCTGTCTCAGCACAACTTAAATACAACATTGATGTTGTGAGTGAATACATTG 812 ||||||||||||||||||| ||||| ||||||||||| |||||| || |||| ||||||| Sbjct 699 CTATAGTTCCTGTCTCAGCGCAACTGAAATACAACATCGATGTTTTGTGTGAGTACATTG 758 Query 813 TCAAGAAGATACCAATCCCTGTGAGAGACTTTGTGTCACCGCCAAAGA-TGATTGTGATT 871 |||||||||| ||| |||||||||| || ||||||||||| |||| || ||||||||||| Sbjct 759 TCAAGAAGATTCCACTCCCTGTGAGGGATTTTGTGTCACCTCCAA-GAATGATTGTGATT 817 Query 872 CGTTCTTTCGATGTCAATAAACCTGGCTCTGCTGGTCATGAAATGAAAGGTGGAGTTGCT 931 |||||||| |||||||||||||||||||||| | | ||| ||||||||||||||||| Sbjct 818 CGTTCTTTTGATGTCAATAAACCTGGCTCTGATTATGATGGTATGAAAGGTGGAGTTGCA 877 Query 932 GGTGGAAGTATCCTCCAGGGAGTTTTGAAAGTGAACCA-ACTGATTGAAATTAGACCTGG 990 ||||| |||||||| ||||| |||||||| ||| || | | || || || |||||||| Sbjct 878 GGTGGGAGTATCCTTCAGGGTGTTTTGAAGGTGGGGCATA-TAATAGAGATAAGACCTGG 936 Query 991 TATCACTGGCAAAGATGA-ACTTGGAAACTCAAAATGCACTCCAATTTACTCCCGTATAA 1049 |||||| | |||||||| | | ||| || | ||||||||||| |||||| | ||||||| Sbjct 937 AATCACTAGAAAAGATGAGAAT-GGAGACACTAAATGCACTCCCATTTACACGCGTATAA 995 Query 1050 CTTCACTT-TACGCGGAACAGAACGAGCTTCAGTTCGCTGTCCCGGGAGGTCTAATTGGA 1108 ||||| || |||||||||||||||||||||||||| ||||||||||||||| | |||||| Sbjct 996 CTTCA-TTGTACGCGGAACAGAACGAGCTTCAGTTTGCTGTCCCGGGAGGTTTGATTGGA 1054 Query 1109 GTTGGAACAACCATGGACCCTACGCTTACGCGTGCTGATAGGTTGGTTGGTCAAGTCCTT 1168 |||| |||| |||||| |||||||||||||||| ||||||||| ||||||||||||||| Sbjct 1055 ATTGGGACAAGCATGGATCCTACGCTTACGCGTGGTGATAGGTTAGTTGGTCAAGTCCTT 1114 Query 1169 GGTGAAATGGGAACTCTCCCTGATGTCTTTGTTGAGCTTGAAGTAAGTTTCCAGCTTCTG 1228 |||||||| || |||||||||||||||| |||||| |||||||| ||||||||||||||| Sbjct 1115 GGTGAAATAGGTACTCTCCCTGATGTCTATGTTGAACTTGAAGTGAGTTTCCAGCTTCTG 1174 Query 1229 ACTCGTCTCATTGGAGTGAGGACAAAGGAAAAAGAGAAGCAAATGAAAGTGTCAAAGCTA 1288 || |||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| Sbjct 1175 ACACGTCTCATTGGAGTGAAGACAAAGGAAACAGAGAGGCAAATGAGAGTGTCAAAGCTA 1234 Query 1289 ACCAAAGAAGAGATACTAATGGTT-AACATCGGGTCCATGTCTACAGGAGCTAAGGTTAT 1347 ||| | ||||||||| ||| || || ||||| || |||||||| ||||||| |||||| Sbjct 1235 GTCAAGGGAGAGATACTGATG-TTGAATATCGGATCGATGTCTACGGGAGCTATGGTTAT 1293 Query 1348 TGGAGTGAAGAAAGATATGGTGAAACTTCAA-CTGACGTCTCCG-GTGTGTACCACCATA 1405 |||||| |||||||||||||||||| || || ||||| |||| ||||| |||| ||| Sbjct 1294 TGGAGTAAAGAAAGATATGGTGAAAGTT-AATCTGACA-CTCCCTGTGTGCACCAGCATT 1351 Query 1406 GGAGAGAAGGTGGCTTTAAGCCGCCGTGTCGATAGGCATTGGCGTCTT-ATTGGTAAG-G 1463 |||||||| |||||| |||| |||||||| ||||||||||||||| || || ||| | | Sbjct 1352 GGAGAGAAAGTGGCTATAAGTCGCCGTGTGGATAGGCATTGGCGT-TTGATCGGTC-GCG 1409 Query 1464 GTCAGATTCTTGCTGGAACCACCATCGATGTTCCTCCTCCTCCTT 1508 |||||||| |||||||||||||| | | ||| ||||||||| Sbjct 1410 GTCAGATTGAGGCTGGAACCACCATTTTTATCCCTTCTCCTCCTT 1454 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80220470910 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5