BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493037

Length=165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G18282.1 | Symbols:  | unknown protein; LOCATED IN: endomemb...   206    6e-53


> AT4G18282.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system; Has 30201 Blast hits to 17322 proteins in 780 
species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi 
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 
(source: NCBI BLink). | chr4:10107585-10107749 FORWARD LENGTH=165
Length=165

 Score =  206 bits (111),  Expect = 6e-53
 Identities = 134/145 (92%), Gaps = 2/145 (1%)
 Strand=Plus/Plus

Query  8    TGCAACTTC-ACTTCACCATCTTGAGATTCAATTGGCTGAGCTATATTGGGTCCACATTG  66
            ||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  2    TGCAACTGCAACTTCACCATCTTGAGATTCAATTGGCTGAGCTATATTGGGTCCCCATTG  61

Query  67   GTCCTCGACCTATTAATGGAACATTTGCTCTCTTTCCACCCTCGATTTGTATGCG-GATG  125
            ||||||| ||| ||||||||||||||||||||| ||| |||||||||| |||||| || |
Sbjct  62   GTCCTCGGCCTGTTAATGGAACATTTGCTCTCTCTCCCCCCTCGATTTATATGCGTGACG  121

Query  126  CGGTCTATATGAAGTACAAATTCTT  150
            |||||||||| ||||||||||||||
Sbjct  122  CGGTCTATATCAAGTACAAATTCTT  146



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7142791842


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5