BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493040
Length=1805
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18260.1 | Symbols: | Cytochrome b561/ferric reductase tran... 1456 0.0
> AT4G18260.1 | Symbols: | Cytochrome b561/ferric reductase transmembrane
protein family | chr4:10093524-10097503 REVERSE
LENGTH=1804
Length=1804
Score = 1456 bits (788), Expect = 0.0
Identities = 911/968 (94%), Gaps = 17/968 (2%)
Strand=Plus/Plus
Query 1 TTCATAGAAGTGATGAACTGATTAAAAagagagagagagagaCTAAAAGGGAATTTTAGA 60
||||||||| ||||||||||||| ||||||||||||| | | | |||||| ||||||
Sbjct 41 TTCATAGAACTGATGAACTGATT---TAGAGAGAGAGAGATA-T-ATAGGGAAATTTAGA 95
Query 61 GAGTGGATTT-TGTGCTTTGAGATTCTTT-T-TGTGTGTGTG-G-TTAATTAGCTATTGA 115
|||||| ||| |||||||||||||||||| | |||||||||| | ||||||| |||||||
Sbjct 96 GAGTGG-TTTGTGTGCTTTGAGATTCTTTGTGTGTGTGTGTGTGATTAATTA-CTATTGA 153
Query 116 GATTGAGATCAGAATGAGAATCTCTAAATCTCTCAGGACTGTTTTGATTTCTATTCTCTT 175
||||||||||||||||| |||||| ||||||||| ||| |||| ||||||||||||||||
Sbjct 154 GATTGAGATCAGAATGAAAATCTCCAAATCTCTCTGGAGTGTTATGATTTCTATTCTCTT 213
Query 176 CTATCTAACTTCTGCTCCACCATTAGTCATCTGCTCATCTCTTGAAGTCACCATTGATAA 235
|||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 214 CTATCTTACTTCTGCTCCACCATTTGTGATTTGCTCATCTCTTGAAGTCACCATTGATAA 273
Query 236 CCATTCACCAAGCAATCTCAATAATAAAGGATCCCAAGAACAAGACAAGTTGAGTCATCA 295
||||||||||||||||||||| | ||||||||||| ||||||||| ||||||||||||||
Sbjct 274 CCATTCACCAAGCAATCTCAAGACTAAAGGATCCCTAGAACAAGATAAGTTGAGTCATCA 333
Query 296 AATGATAAATAGCATAAAGCTTCATGGCATTCTCTTATGGGTTTCTATGGGCTTTCTTAT 355
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 334 AATGATAAATAGCATAAAGCTTCATGGCATTCTCTTATGGGTTTCCATGGGCTTTCTTAT 393
Query 356 GCCATTGGGGATTATCTTCATTCGAATGACCAATAAAGCTCATGCAAATGGAATAAAAGT 415
|||| |||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct 394 GCCAGTGGGGATTCTCTTCATTAGAATGGCCAATAAAGCTCATGAAAATGGAATAAAAGT 453
Query 416 TAAAGTGTTCTTCTATCTTCATGTCATTTTCCAGATATTGGCAGTGGTTTTAGCAACAAT 475
||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 454 TAAAGTGTTCTTCTACCTTCATGTCATTTTCCAGATACTGGCAGTAGTTTTAGCAACAAT 513
Query 476 AGGAGCTATACTGTCTTTAAGAACATTGGAGAACTCTTTTGACAACAACCATCAAAGACT 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 AGGAGCTATACTGTCTTTAAGAACATTGGAGAACTCTTTTGACAACAACCATCAAAGACT 573
Query 536 TGGCTTGGCTCTTTATGCTGCCATGTGGCTCCAATTCTTGACCGGTATCTTCAAGCCCTC 595
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 574 TGGTTTGGCTCTTTATGCTGCCATGTGGCTCCAATTCTTGACCGGTGTCTTCAAGCCCTC 633
Query 596 AAGAGGGAGCAAAAGGAGGTTGAGATGGTTCTTATTGCATTGGATTCTTGGAACAATAGT 655
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 634 AAGAGGGAGCAAAAGGAGGTTAAGATGGTTCTTATTGCATTGGATACTTGGAACAATAGT 693
Query 656 CTCAATAGTTGGCATAATAAACATATACACAGGCATA-AGAGCTTATCAAAAGAAGACAA 714
||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct 694 GTCAATAGTTGGCATAGTAAACATATACACAGGCATACA-AGCTTATCAAAAGAAGACAT 752
Query 715 CATCAAGTAGATACTCAAGTCTTTGGACAATCTTGTTCACAGCTCAAGTCACTTGTCTTG 774
||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 753 CATTAAGTAGAGACTCAAGTCTTTGGACAATCTTGTTCACAGTTCAAGTCACTTGTCTTG 812
Query 775 TCTTCTTCTATCTATATCAAGACAAATGGGAACATTTTCAAAAGCAAAGAGTTGTTCTTG 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 TCTTCTTCTATCTATATCAAGACAAATGGGAACATTTTCAAAAGCAAAGAGTTGTTCTTG 872
Query 835 ATGAATCGGATCAGCAAAATAATAACACAAATGGAAGTAATAATAACCAAAGCATCCAAG 894
| |||| |||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 873 ACGAATTGGATCATCAAAATAATAACACAAATGGAAG--A-AATAACCAAAGCATCCAAG 929
Query 895 TGGTAACGAGAAATGATCATGAACAAAAGGTCATGGTTCCTCAGCCTTGTCGCAAAAGTA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 TGGTAACGAGAAATGATCATGAACAAAAGGTCATGGTTCCTCAGCCTTGTCGCAAAAGTA 989
Query 955 ATGCACTT 962
||||||||
Sbjct 990 ATGCACTT 997
Score = 1186 bits (642), Expect = 0.0
Identities = 733/778 (94%), Gaps = 2/778 (0%)
Strand=Plus/Plus
Query 1012 Tagagaac--gagagagaggagaagaagatggtaggcgaagaggagacgaagaagagagT 1069
|||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1003 TAGAGAACGAGAGAGAGAGGAGAACAAAATGGTAGGCGAAGAGGAGACGAAGAAGAGAGT 1062
Query 1070 TGTCACTGAATCGCTGGGATGGTTAACGGAATCTTCGATTATGCCAAAGAAGCATCGCGC 1129
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 AGTCACTGAATCGCTAGGATGGTTAACGGAATCTTCGATTATGCCAAAGAAGCATCGCGC 1122
Query 1130 CATCGAAGGTGTTGGTCCTTCTTCAATCATGGAGCTTAAAGCTCAGCTCTATAAATCGCA 1189
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1123 CATCGAAGGTGTTGGTCCTTCCTCAATCATGGAGCTTAAAGCTCAGCTCTATAAGTCTCA 1182
Query 1190 AGAAGAAGCTAAACAGACGAAGGATTTCACGGGATCCGATGTTCAATACCATCGCGCTAA 1249
|| |||||||||||||| |||||||| ||||||||||||| ||||||||||||||| ||
Sbjct 1183 GGAGGAAGCTAAACAGACAAAGGATTTTACGGGATCCGATGCTCAATACCATCGCGCCAA 1242
Query 1250 GGAAAGGATTGCCGCTAAAGATTCTTTCTCTGCGAAAAATTCCGGCGTTGAGAGTCGCAA 1309
|||||||||||||| |||||||||||| | |||||||| |||||||| || ||||||||
Sbjct 1243 AGAAAGGATTGCCGCCAAAGATTCTTTCGCCGCGAAAAACTCCGGCGTCGAAAGTCGCAA 1302
Query 1310 TCTAAAGGACAAGCTCGAGCTCAAAGCTGTAAAAGATGGAGCAGTTAGTTATGCTGCATT 1369
| ||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1303 TTTAAAGGACAAGCTTGAGCACAAAGCTGTAAAAGATGGAGCAGTTAGTTATGCCGCATT 1362
Query 1370 GGAGAAAAAGGCTCAGTTGTATGATAAACTTGTTAGAGGAGAGCTTTCAGATGAAGAAGG 1429
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1363 GGAGAAAAAGGCTCAGTTGTATGATAAACTTGCTAGAGGAGAGCTTTCTGATGAAGAAGG 1422
Query 1430 TGAAGAGAAGTACTGTGTTGACTTCTCCAGGAAAGGAATTCAACATGAAGACCCAAAATC 1489
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
Sbjct 1423 TGAAGAGAAGTACTGTGTTGACTTCTTTAGGAAAGGAATTCAACATGAAGATCCAAAACC 1482
Query 1490 ATCAAGAACTTACAGCAGTTCCATTTCAGCACCACCTGAAGATTTAAAACAAGATGGTGA 1549
|||||| ||||||| |||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1483 ATCAAGCACTTACAACAGTTCCATTTCAGCACCACCTGAAGATTTCAAGCAAGATGGTGA 1542
Query 1550 AGATGATGGTTTGCTGTTTAGCACCAAATTTGCTGGACTTGGACACGCAATTGGGACAGC 1609
||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1543 AGATGATGGTTCGCTTTTTAGCACCAAATTTGCTGGACTTGGACATGCAATTGGGACAGC 1602
Query 1610 TGATGTAAGTCAACATGTGCGTATGGTCAGGGAGGTTCATGAGGAAGTGAATCAAGCTAG 1669
||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 1603 TGATGTAGGTCAACACGTGCGCATGGTCAGGGAGGTTCATGAGGAAGTCAATCAAGCGAG 1662
Query 1670 AGAAAAGGCAACTGAGTTAAAGCAAAGGAGACAAGAGCAAGCAACAAATCGTCGGGAGAA 1729
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 AGAAAAGGCAACCGAGTTAAAGCAAAGGAGACAAGAGCAAGCAACAAATCGTCGGGAGAA 1722
Query 1730 ACTCAAACAAGCTTATCTTCGGAAGCAGCTCGAGAAACTAAAGGCTCAACAACAACAA 1787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 ACTCAAACAAGCTTATCTTCGGAAGCAGCTCGAGAAACTAAAGGCTCAACAACAACAA 1780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89306769555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5