BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493043
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18230.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1478 0.0
> AT4G18230.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Oligosaccharide biosynthesis protein Alg14 like (InterPro:IPR013969);
Has 640 Blast hits to 640 proteins in 277 species:
Archae - 4; Bacteria - 281; Metazoa - 94; Fungi - 127; Plants
- 57; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
| chr4:10080352-10081939 REVERSE LENGTH=942
Length=942
Score = 1478 bits (800), Expect = 0.0
Identities = 900/947 (95%), Gaps = 12/947 (1%)
Strand=Plus/Plus
Query 1 AATTCCCTAATCCTTTTCGTTCCCGTCACCGCCGGGATTCTCCGTCGCCG-----AAGAG 55
||||| |||||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 1 AATTCTCTAATCCTTTACGTTCCCGTCACCGCCGGGATTCTCCGTCGCCGATCTCAAAAG 60
Query 56 TGTTGTTATCAGGATCATGGAGGAAGGTTGCAGCTGCATTTACTCAAGGATGGCCTCAAG 115
| | || | |||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 61 -GAAG-TA-C--GATCATGGAGGAAGGTTGCAACTGTGTTTACTCAAGGATGGCCTCAAA 115
Query 116 ATTCAGCATTGGTTTATTGATTATTTTGGCAATCGTTCTTCTTATGGTTCGTGTACTGTA 175
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 116 ATTCAGCATTGGTTTATTGATTATTTTGGCGATCGTTCTTCTAATGGTTCGTGTACTGTA 175
Query 176 TGTTATATACCGGTGTGGCAAACCTCTTCCAAAAGGAGCTTCACAGTCTTTTACTACTCT 235
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 176 TGTTATATACCGATGTGGCAAACCACTTCCAAAAGGAGCTTCACAGTCTTTTACTACTCT 235
Query 236 TATTGTTCTTGGTTCTGGGGGACACACGGCTGAGATGTTGAGTCTCCTCTCTGTTTTGCG 295
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 236 TATTGTTCTTGGTTCTGGGGGACACACAGCAGAGATGTTGAGTCTCCTCTCTGTTTTGCG 295
Query 296 CAAGGACAGATTTACACCAAGGTTTTACATTGCTGCAGCTACTGATAACATGAGTCTCCA 355
||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 296 GAAGGATAGATTTACACCAAGGTTTTACATTGCTGCTGCTACAGATAACATGAGTCTCCA 355
Query 356 GAAAGCTCGTAGTTTTGAAGATTCTGTAGCTGAGAAGCCTGCTGTTAAGGAAGCATCATC 415
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 356 GAAAGCTCGTAGTTTTGAAGATTCTCTAGCTGAGAAGCCTGCTGTTAAGGAAGCATCATC 415
Query 416 ACAGTTCATGCAAATTTACCGGAGTCGTGAAGTTGGTCAGTCTTATGTGACTTCTGTTTG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ACAGTTCATGCAAATTTACCGGAGTCGTGAAGTTGGTCAGTCTTATGTGACTTCTGTTTG 475
Query 476 GACTACCATTGTTGCTATTGTTCATGCTCTGTGGCTAATGATCCGGATCAGACCACAAGT 535
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 476 GACTACCATTGTTGCTATTCTTCACGCTCTGTGGCTAATGATCCGGATCAGACCACAAGT 535
Query 536 GATTCTTTGCAATGGTCCTGGGACCTGTATTCCTCTGTGTGTGATCGC-TTTCGTATTCA 594
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 536 GATTCTTTGCAATGGTCCTGGGACCTGTATTCCTCTGTGTGTGATCGCCTTTT-TATTCA 594
Query 595 AGGTGCTGGGAATTAGATGGTCATCAATCTTTTATGTTGAGAGTGTAGCAAGAGTGAAAA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 AGGTGCTGGGAATTAGATGGTCATCAATCTTTTATGTTGAGAGTGTAGCAAGAGTGAAAA 654
Query 655 AGCTCTCATTAAGTGGATTGTTACTTTACAAGTTGAGGATAGCTGATCAATTCTTTGTTC 714
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 655 AGCTCTCATTAAGTGGATTGTTGCTTTACAAGTTGAGAATAGCTGATCAATTCTTTGTTC 714
Query 715 AATGGCCACAATTGCAAAATAAATACCCTCGGGCTCACTATGTTGGGTGCCTGATGTAAG 774
||||||||||| |||| || || || ||||||||||||||||||||||||||||||||||
Sbjct 715 AATGGCCACAACTGCATAAGAAGTATCCTCGGGCTCACTATGTTGGGTGCCTGATGTAAG 774
Query 775 CTGATTGGAACTCTCCTTATACCTAGATATATTACAAAAACTTAGAAAGCTACATAGTGT 834
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CTGATTGGAACTCTACTTACACCTAGATATATTACAAAAACTTAGAAAGCTACATAGTGT 834
Query 835 ACACCTTCTCTTTATATGCAGGATTGAGTTTTAAACAATGAATTTTTGTAATCAGCTGTT 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 ACACCTTCTCTTTATATGCAGGATTGAGTTTTAAACAATGAATTTTTGTAATCAGCTGTT 894
Query 895 CTGACTTTGTTAATGACTTAATACCATTTCAGTGAGCTTATAATGTG 941
||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 895 TTGACTTTGTTAATGACTTAATGCTATTTCAGTGAGCTTATAATGTG 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014478652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5