BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493053
Length=1809
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18140.1 | Symbols: SSP4b | SCP1-like small phosphatase 4b |... 1134 0.0
AT5G46410.2 | Symbols: SSP4 | SCP1-like small phosphatase 4 | c... 625 5e-178
> AT4G18140.1 | Symbols: SSP4b | SCP1-like small phosphatase 4b
| chr4:10046575-10049394 REVERSE LENGTH=1826
Length=1826
Score = 1134 bits (614), Expect = 0.0
Identities = 860/970 (89%), Gaps = 51/970 (5%)
Strand=Plus/Plus
Query 2 aaaaaaaCCAGAGAGAAGGaaaaaaaaaaaaaCTCTTGCTTCTTCAGGTTGG------TC 55
||||||||||||||| ||||| ||||||||||||||||||||||||||| || ||
Sbjct 5 AAAAAAACCAGAGAGGAGGAAGAAAAAAAAAACTCTTGCTTCTTCAGGTAGGTCTTCTTC 64
Query 56 TTCTTCTTCCTGAGCTCAATCTAGTTCTTGGTGTTTTTATGCAATTGTGATTATTAATGA 115
||||||||||| ||||||||||| |||||| ||||||| ||||||| ||||| ||||| |
Sbjct 65 TTCTTCTTCCTTAGCTCAATCTAATTCTTGTTGTTTTTCTGCAATTTTGATTGTTAATTA 124
Query 116 TCGGTATTTAACGTTTCTTAGCAATTTTATTTTGTTTTTATCGGTAGACTTGTGTTTGAG 175
|| || |||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 125 TCTGTGTTTAACGTTTCTTAGCAATTTTATTTTGGTTTTATCGGTTGACTTGTGTTTGAG 184
Query 176 TTTGTGAAAATGATCAAAAATTC-TACTACAGATCTGTTTGTTTATCTTACTAGATTCTG 234
||||||||||||||||||||||| | |||||||| || |||||||||||||| ||||||
Sbjct 185 TTTGTGAAAATGATCAAAAATTCCTGTTACAGATCCGTATGTTTATCTTACTATATTCTG 244
Query 235 TCTTCTTCATCAAGAAGCTGACTTTGTTTTGCAGCATC-G-----------ATCTTGAGA 282
| | |||||||| |||||||||||||||||||| ||| | |||||||||
Sbjct 245 TAAT-TTCATCAACAAGCTGACTTTGTTTTGCAGTATCTGCTGCTGGTTTGATCTTGAGA 303
Query 283 CCATTCCTTTTGCAG-----------A---CTAT-GCCAATGCCA-T----TTTT-GAAA 321
||||| ||||||||| | ||| | | |||||| | |||| ||||
Sbjct 304 CCATTTCTTTTGCAGCTTGTTGTTGTATTTCTAGAGACTATGCCAATGCCATTTTTGAAA 363
Query 322 ATGAAGAGCAAGATAAGCAAAGACTCGTTAAGAGAAAAAAGGGTTCTTGGTGTTTGTAAG 381
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 364 ATGAAGAGCAAGATAAGCAAGGACTCGTTAAGAGAGAAAAGAGTTCTTGGTGTTTGTAAG 423
Query 382 AAATTACCTCATAAGGAT-TTAAAAAATTCATGCTTTGATTCCAAAATATCGGAGAGAAT 440
||| |||||||||||| ||||||| ||||||||||||| |||||||||||||||||||
Sbjct 424 AAA---CCTCATAAGGATGTTAAAAA-TTCATGCTTTGATCCCAAAATATCGGAGAGAAT 479
Query 441 GGAACATTTGGTCACTGCTACTCAGAATTGCCACAACAATGAGGAACAAGATT-TAGGTT 499
||||| ||||||||||||||||||||||||| ||||||| |||||||| || | ||||||
Sbjct 480 GGAACTTTTGGTCACTGCTACTCAGAATTGCAACAACAACGAGGAACA-GAATATAGGTT 538
Query 500 TGGATTCTTCTACTAGGGATGTTGAAACAAATGAACCTGAAGACCTGCAAGTTGAAGACA 559
|||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 539 TGGATTCTTCTACTAGGGATGTTGTAACAAATGAACCCCAAGACCTGCTAGTTGAAGACA 598
Query 560 CTTCCAATAATGCGTCGAATATGGATACAATATTTTCACCTGTTCTGGATGATGAACTGT 619
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 GTTCCAAAAATGCGTCGAATATGGATACAATATTTTCACCTGTTCTTGATGATGAACTGT 658
Query 620 ATTCAGAAACTGATCGAGTATTTGTGGCAGGAAACAATGTGCAATGGGAAATGCCTAGGT 679
|||| |||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 659 ATTCTGAAACTGACCGAGTATTTGTGGAAGGGAACAATGTGCAATGGGAAATGCCTAGGT 718
Query 680 GGGGAGCTGATGAGAGCAGCAGCAGCAATCAATCTTGCAACGATTCTGATTACTTTCTTT 739
||||||||||||| |||||| | |||||| | |||||||||||||||||||||||| |
Sbjct 719 GGGGAGCTGATGACTGCAGCA--A-CAATCAGTTTTGCAACGATTCTGATTACTTTCTAT 775
Query 740 CTGATGTGCTGATTGCAAGCTTGCCATTTTATGAGACTGGAAATGTTGATTTTTTCACTG 799
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 776 CTGATGTGCTGATTGCAAGCTTGCCATTCTATGAGAGTGGAAATGTTGATTTTTTCACTG 835
Query 800 AGATAAGTCCCTTGCCTCGTTGTATCTTTCCAGAGACAAGTGCGTTACTAGATGTAGCTG 859
|||||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||
Sbjct 836 AGATAAGTCCCTTGCCTCATTGTATCTTTCCAGAGCCAAGTGTGTTACTAGATGCAGCTG 895
Query 860 AGCAGTACATGCTATTACCTTACTTAGAAGATGGATCAGCCAGCAGTGATGATGTTAAGT 919
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 896 AGCAGTACATGTTATTACCTTACTTAGAAGATAGATCAGCCAGCAGTGATGATGTTAAGT 955
Query 920 CTGATGAGGA 929
||||||||||
Sbjct 956 CTGATGAGGA 965
Score = 1125 bits (609), Expect = 0.0
Identities = 780/856 (91%), Gaps = 38/856 (4%)
Strand=Plus/Plus
Query 977 GGTCAAGATCACAAAACTTGGAAGCTGCAGATG-CTCACGCTGAAGCTGAACAAACTGAA 1035
||||||||||| ||||||||||||| ||||| | |||| ||||||||||||||||||||
Sbjct 980 GGTCAAGATCAAAAAACTTGGAAGCAGCAGA-GAATCACACTGAAGCTGAACAAACTGAA 1038
Query 1036 GATTTTGATCCTCAGCTTTTCTTAAGAAATCAACCGGAATTATCTGATGTCGTATTCAAT 1095
||||||||||| ||| ||||||||||||||||||| |||||| ||||||| |||||||||
Sbjct 1039 GATTTTGATCCACAGATTTTCTTAAGAAATCAACCAGAATTAGCTGATGTGGTATTCAAT 1098
Query 1096 TATTTCCCTGATATGCAGCAGCCTAGGGAATCCCCGAAAAGGAAGGCGGTAACCCTTGTT 1155
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1099 TATTTCCCGGATATGCAGCAGCCTAGGGACTCTCCGAAAAGGAAGGCGGTAACCCTTGTT 1158
Query 1156 CTCGATTTGGATGTGACATTGCAGAAACTCTGGTCCATTCGACTCTGGGAGCCTGCAGAG 1215
|| || || || | | | ||||||||||||||||||||||||| || ||| ||||
Sbjct 1159 CTTGA-TT---TG-G--A-T---GAAACTCTGGTCCATTCGACTCTGGAAGTCTGTAGAG 1207
Query 1216 ATACAGACTTTTCCTTCAGAGTGTCTTTCAATATGCAAGAGAACACTGTTTACGTGAAAC 1275
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1208 ATACAGACTTTTCCTTCAGAGTCACTTTCAATATGCAAGAGAACACTGTTTACGTGAAAC 1267
Query 1276 AAAGGCCACACCTTTATAGGTTCTTAGAGAGGGTGGTTCAACTTTTTCATGTTGTCATCT 1335
|||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1268 AAAGACCATACCTTTATAGGTTCTTAGAGAGGGTGGTTGAACTTTTTCATGTTGTCATCT 1327
Query 1336 TCACGGCTAGTCACAGCAAT-TATGCGTCTCAACTTCTAGATATATTGGATCCAGATGGG 1394
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1328 TCACGGCTAGTCACAGC-ATCTATGCGTCTCAGCTTCTAGATATATTGGATCCAGATGGG 1386
Query 1395 AAGTTTGTATCGCAACGTTTTTACCGGGATTCATGCATTCTTTCAGATGGGATTTACACC 1454
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1387 AAGTTTGTATCGCAACGTTTTTACCGGGATTCATGCATTCTTTCAGATGGTATTTATACC 1446
Query 1455 AAGGATTTAACTGTTTTGGGTCTTGATCTAGCAAAAATGGCTATAATTGACAACTGTCCA 1514
||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1447 AAGGATTTAACCGTTTTGGGTCTTGATCTAGCAAAAGTGGCTATAGTTGACAACTGTCCA 1506
Query 1515 CAGGTGTACAGATTGCAAATAAACAATGGGATCCCTATCAAAAGTTGGTACGATGATCCA 1574
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1507 CAGGTGTACAGATTGCAAATAAACAATGGGATCCCTATTAAAAGTTGGTATGATGATCCA 1566
Query 1575 ACTGATGATGGTCTGATTACATTACTTCCCTTCTTAGAGACATTGGCTGATGCCAACGAT 1634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 ACTGATGATGGTCTGATTACATTACTTCCCTTCTTAGAGACATTGGCTGATGCCAACGAT 1626
Query 1635 GTTCGTCCTGTCATCGCCAAGAGATTCGATCATTGGAACAACAAGTTATTTTGATTAGGC 1694
|||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1627 GTTCGTCCTGTCATTGCCAAGAGATTCGATCATTC-AACAAGAAGTTCTTTTGATTAGGC 1685
Query 1695 GTAAGGAAGTGACCTGACT-TTGTTCTGCTCTGTGTTAAC---A-T-----G-T------ 1737
||||||||||||||||||| ||||||| |||||||||||| | | | |
Sbjct 1686 GTAAGGAAGTGACCTGACTATTGTTCTTCTCTGTGTTAACTTGACTCTTAAGGTTTTGTC 1745
Query 1738 -A---TCTTAAGCTCCCTGACAAACTTGCCAATATGTAAATCTATAGAATGTTTAACTTG 1793
| ||||||||||||||||||||||||||||||||| |||| || |||||| ||||||
Sbjct 1746 TAAGGTCTTAAGCTCCCTGACAAACTTGCCAATATGTACATCTTTACAATGTT-AACTTG 1804
Query 1794 TTTTCATTAAAATTTG 1809
|||||||||| |||||
Sbjct 1805 TTTTCATTAACATTTG 1820
> AT5G46410.2 | Symbols: SSP4 | SCP1-like small phosphatase 4 |
chr5:18825103-18829221 FORWARD LENGTH=2560
Length=2560
Score = 625 bits (338), Expect = 5e-178
Identities = 664/814 (82%), Gaps = 52/814 (6%)
Strand=Plus/Plus
Query 857 CTGAGCAGTACATGCTATTACCTTACTTAGAAGATGGATCAGCCAGCAGTGATGATGTTA 916
|||||||||||||| || ||||||||||||||||||||||||||| || |||||| |||
Sbjct 812 CTGAGCAGTACATGGTACTACCTTACTTAGAAGATGGATCAGCCAACAAAGATGATATTA 871
Query 917 AGTCTGATGA-GGACAGCGGGGGTAATGTCGATAAACATGACATGTTTATGGCTTTCAAC 975
|||| ||| | |||| | |||| ||||||| |||||| ||||| |||| ||||||
Sbjct 872 AGTCAGAT-ACTGACA---AGATTAATCTCGATAACCATGACTTGTTTCTGGCATTCAAC 927
Query 976 TGGTCAAGATCACAAAACT-TGGAAGCTGCAGATGCTCACGCTGAAGCTGAACAAACTGA 1034
|| ||||||| | || | ||||| | |||||| || |||||| ||||| | ||||
Sbjct 928 CGGACAAGATCGTACAA-TGTGGAA-C--CAGATGATCGTGCTGAATCTGAAGTAGCTGA 983
Query 1035 AGATTTTGATCCTCAGCTTTTCT-TAAGAAATCAACCGGAATTATCTGATGTCGTATTCA 1093
||| ||||||||||||||||| | ||| |||||| ||||||||||| ||||| ||| ||
Sbjct 984 AGACTTTGATCCTCAGCTTTT-TATAAAAAATCAGCCGGAATTATCGGATGTTGTA-TCC 1041
Query 1094 ATTATTTCCCTGATATGCAGCAGCCTAGGGAATCCCCGAA-AAGGAAGGCGGTAACCCTT 1152
| | | | || | | |||| ||| || ||| || || |||| | || ||||||
Sbjct 1042 A--A--T---T-AT-T---G--GCCTCGGG-ATACCCTAAGAAAGAAGTCTGTGACCCTT 1086
Query 1153 GTTCTCGATTTGGATGTGACATTGCAGAAACTCTGGTCCATTCGACTCTGGGAGCCTGCA 1212
| || | || ||| || | | |||||| |||||||||||||||||| | | || |
Sbjct 1087 G-TC-C---TT-GATTTG-GA-T---GAAACTTTGGTCCATTCGACTCTGGAATCGTGTA 1135
Query 1213 GA-GATACAGACTTTTCCTTCAGAGTGTCTTTCAATATGCAAGAGAACACTGTTTACGTG 1271
| | | |||| |||||||||||||| | |||||| |||||||| ||||| || || |||
Sbjct 1136 -ATGTTGCAGATTTTTCCTTCAGAGTCTTTTTCAACATGCAAGAAAACACGGTCTATGTG 1194
Query 1272 AAACAAAGGCCACACCTTTATAGGTTCTTAGAGAGGGTGGTTCA-ACTT-TTTCATGTTG 1329
| |||||||||||||||||| |||||||| |||||||||| | | || |||||||| |
Sbjct 1195 AGACAAAGGCCACACCTTTACAGGTTCTTGGAGAGGGTGG--GAGAGTTGTTTCATGTCG 1252
Query 1330 TCATCTTCACGGCTAGTCACAGCAAT-TATGCGTCTCAACTTCTAGATATATTGGATCCA 1388
| |||||||| || || |||||| || ||||| || ||||||||||||||| |||| |||
Sbjct 1253 TTATCTTCACAGCAAGCCACAGC-ATCTATGCCTCACAACTTCTAGATATACTGGACCCA 1311
Query 1389 GATGGGAAGTTTGTATCGCAACGTTTTTACCGGGATTCATGCATTCTTTCAGATGGGATT 1448
||||| ||||| |||| || |||||||| || |||||||||||||||| ||||| |||
Sbjct 1312 GATGGAAAGTTCATATCACAGCGTTTTTATCGCGATTCATGCATTCTTTTGGATGGAATT 1371
Query 1449 TACACCAAGGATTTAACTGTTTTGGGTCTTGATCTAGCAAAAATGGCTATAATTGACAAC 1508
||||||||||||||||||||| ||||||||||||| || ||| |||||||||||||||||
Sbjct 1372 TACACCAAGGATTTAACTGTTCTGGGTCTTGATCTGGCCAAAGTGGCTATAATTGACAAC 1431
Query 1509 TGTCCACAGGTGTACAGATTGCAAATAAACAATGGGATCCCTATCAAAAGTTGGTACGAT 1568
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1432 TGTCCGCAGGTGTACAGATTGCAAATAAATAATGGGATCCCTATCAAAAGTTGGTACGAT 1491
Query 1569 GATCCAACTGATGATGG-TCTGATTAC-ATTACTTCCCTTCTTAGAGACATTGGCTGATG 1626
||||||||||||||||| | ||||||| || |||||||||||||||||| ||||||| ||
Sbjct 1492 GATCCAACTGATGATGGGT-TGATTACTAT-ACTTCCCTTCTTAGAGACTTTGGCTGTTG 1549
Query 1627 CCAACGATGTTCGTCCTGTCATCGCCAAGAGATT 1660
| | |||||||| ||| |||| | || ||||||
Sbjct 1550 CTGATGATGTTCGGCCTATCATTGGCAGGAGATT 1583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89507571735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5