BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493058
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18100.1 | Symbols: | Ribosomal protein L32e | chr4:1003548... 1079 0.0
AT5G46430.1 | Symbols: | Ribosomal protein L32e | chr5:1883326... 503 1e-141
> AT4G18100.1 | Symbols: | Ribosomal protein L32e | chr4:10035485-10036541
REVERSE LENGTH=698
Length=698
Score = 1079 bits (584), Expect = 0.0
Identities = 668/706 (95%), Gaps = 15/706 (2%)
Strand=Plus/Plus
Query 1 ATTTTAGGTTTGTTGTGCTGTTTTACGGAGTCGCTTTTGAG--A--GATCTTACGAAGAA 56
|||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1 ATTTTAGGTTTGTTCAGCTGTTTTACGGAGTCGCTTTTGAGATATCGATCTTACGAAGAA 60
Query 57 GCAAAAATGGCGGTCCCGTTGCTTACCAAGAAGGTCGTGAAGAAGAGGTCTGCTAAGTTC 116
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GCAAATATGGCGGTCCCATTGCTTACCAAGAAGGTTGTGAAGAAGAGGTCTGCTAAGTTC 120
Query 117 ATCAGACCCCAGAGTGACCGCAGAATCACCGTTAAGGAAAGCTGGAGGAGGCCAAAGGGT 176
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 121 ATCAGACCCCAGAGTGACCGTAGAATCACCGTCAAGGAAAGCTGGAGGAGGCCAAAGGGT 180
Query 177 ATTGATTCAAGGGTGAGAAGAAAGTTCAAAGGTGTGACTTTGATGCCCAATGTTGGTTAC 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTGATTCAAGGGTGAGAAGAAAGTTCAAAGGTGTGACTTTGATGCCCAATGTTGGTTAC 240
Query 237 GGATCTGACAAGAAGACTCGTCACTATCTTCCCAATGGATTCAAGAAATTCGTTGTTCAC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGATCTGACAAGAAGACTCGTCACTATCTTCCCAATGGATTCAAGAAATTCGTTGTTCAC 300
Query 297 AACACAAGTGAGCTCGAGTTGTTGATGATGCACAACAGGACTTACTGTGCAGAGATTGCT 356
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 AACACAAGTGAGCTCGAGTTGTTGATGATGCACAACAGGACTTACTGTGCTGAGATTGCT 360
Query 357 CACAACGTCTCCACTAAGAAGAGGAAGTCAATTGTTGAGAGAGCTTCTCAGCTAGACATT 416
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct 361 CACAACGTCTCCACTAAGAAGAGAAAGGCAATTGTTGAGAGAGCTTCTCAGCTAGACGTT 420
Query 417 GTTGTTACCAACAGGCTTGCTAGGCTCCGTAGCCAAGAAGACGAGTGAAGAAGAAACAAG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 421 GTTGTTACCAACAGGCTTGCTAGGCTCCGTAGCCAAGAAGACGAGTGAAGAAGAATCTTG 480
Query 477 CTTACTACTTGAGATATTTAGTTGTTTCTTCtgttttgttgcaattttcctttttgttat 536
| |||||||| || | | ||| | |||||||||||||||| ||| ||||||||||||
Sbjct 481 CCTACTACTT-AG-T-T---GTT-T--CTTCTGTTTTGTTGCA-TTT-CCTTTTTGTTAT 529
Query 537 aagacgatttttgattactgctttgtttgtgtttgGAGTGAACAAACATGAGTTTTGGTT 596
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 530 AAGACGATTTTTGATTACTGCTGTGTTTGTGTTTGGAGTGAACAAACATGAGTTTTGGTT 589
Query 597 TTTGTATGAAACAGATCAAGTTAAGACCTTTTGTTAAAACTATTTCTGATTCATTACTTG 656
|| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 590 TTAGTATGAAACAGATCAAGTTAAGACCTTTTGTTAAAGCTATTTCGGATTCATTACTTG 649
Query 657 TCAAAGATTGAGCCTTTTTCATCTAGAATTTGATAATTTATCAGAG 702
|||||| |||||||| ||||||||||||||| ||||||| ||||||
Sbjct 650 TCAAAGGTTGAGCCTATTTCATCTAGAATTTAATAATTTGTCAGAG 695
> AT5G46430.1 | Symbols: | Ribosomal protein L32e | chr5:18833267-18834564
FORWARD LENGTH=602
Length=602
Score = 503 bits (272), Expect = 1e-141
Identities = 363/408 (89%), Gaps = 2/408 (0%)
Strand=Plus/Plus
Query 59 AAAAATGGCGGTCCCGTTGCTTACCAAGAAGGTCGTGAAGAAGAGGTCTGCTAAGTTCAT 118
|||||||||||| ||||||||||| |||||||| ||||||||||||||||| || |||||
Sbjct 42 AAAAATGGCGGTTCCGTTGCTTACGAAGAAGGTGGTGAAGAAGAGGTCTGCCAAATTCAT 101
Query 119 CAGACCCCAGAGTGACCGCAGAATCACCGTTAAGGAAAGCTGGAGGAGGCCAAAGGGTAT 178
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 102 CAGACCCCAGAGTGATCGCAGAATCACCGTCAAGGAAAGCTGGAGGAGGCCTAAGGGTAT 161
Query 179 TGATTCAAGGGTGAGAAGAAAGTTCAAAGGTGTGACTTTGATGCCCAATGTTGGTTACGG 238
||| || ||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 162 TGACTCCCGGGTGAGAAGAAAGTTCAAGGGTGTCACCTTGATGCCCAATGTTGGTTACGG 221
Query 239 ATCTGACAAGAAGACTCGTCACTATCTTCCC-AATGGATTCAAGAAATTCGTTGTTCACA 297
|||||| |||||||| || ||||| | |||| |||||||||||||| ||| |||||||||
Sbjct 222 ATCTGATAAGAAGACCCGCCACTA-CCTCCCAAATGGATTCAAGAAGTTCATTGTTCACA 280
Query 298 ACACAAGTGAGCTCGAGTTGTTGATGATGCACAACAGGACTTACTGTGCAGAGATTGCTC 357
|||| |||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 281 ACACCTCTGAGCTCGAGCTACTCATGATGCACAACAGGACTTACTGTGCAGAGATTGCTC 340
Query 358 ACAACGTCTCCACTAAGAAGAGGAAGTCAATTGTTGAGAGAGCTTCTCAGCTAGACATTG 417
|||| |||| || |||||||| ||| | || || ||||||||||||||||||||| |||
Sbjct 341 ACAATATCTCAACAAAGAAGAGAAAGGCCATAGTGGAGAGAGCTTCTCAGCTAGACGTTG 400
Query 418 TTGTTACCAACAGGCTTGCTAGGCTCCGTAGCCAAGAAGACGAGTGAA 465
||||| |||||| ||||| |||| | |||||||| |||||||||||||
Sbjct 401 TTGTTTCCAACAAGCTTGGTAGGTTGCGTAGCCAGGAAGACGAGTGAA 448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5