BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493066
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18040.1 | Symbols: EIF4E, CUM1, AT.EIF4E1, eIF4E1 | eukaryo... 1358 0.0
> AT4G18040.1 | Symbols: EIF4E, CUM1, AT.EIF4E1, eIF4E1 | eukaryotic
translation initiation factor 4E | chr4:10016567-10018228
REVERSE LENGTH=942
Length=942
Score = 1358 bits (735), Expect = 0.0
Identities = 876/943 (93%), Gaps = 14/943 (1%)
Strand=Plus/Plus
Query 1 ACGAGTGGAAATACATTAGTTTGgagaagagaaacagagaggaagagagagagacacaga 60
||||| |||| |||||||||||||||||||| || ||| | | ||||| ||||| | |||
Sbjct 1 ACGAGAGGAAGTACATTAGTTTGGAGAAGAGTAATAGACA-G-AGAGATAGAGAGAAAGA 58
Query 61 gagGCAGTTCTGAGAAACAATGGCGGTAGAAGACACTCCCAAATCTGTTGTTACGGAAGA 120
|| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 59 GAAGCAGTTCGGAGAAACAATGGCGGTAGAAGACACTCCCAAATCTGTTGTAACGGAAGA 118
Query 121 AGCAAACCCTAATTCTATAGAGAATCCGATTGATCGATACCATGAGGAAGGTGATGATGC 180
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGCTAAGCCTAATTCAATAGAGAATCCGATTGATCGATACCATGAGGAAGGTGATGATGC 178
Query 181 CGAAGAAGGAGAGATCGTCGGAGGTGAAGGAGACGGAAACGTTGACGAATCGAGCAAATC 240
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 179 CGAAGAAGGAGAGATCGCCGGAGGAGAAGGAGACGGAAACGTTGACGAATCGAGCAAATC 238
Query 241 CGCTGTTCCTCAATCGCATCCTTTGGAACATTCATGGACTTTCTGGTTCGACAATCCTTC 300
|| ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| |
Sbjct 239 CGGTGTTCCTGAATCGCATCCTCTGGAACATTCATGGACTTTCTGGTTCGATAATCCTGC 298
Query 301 TGTGAAATCGAAGCAAACCACTTGGGGAATTTCCTTGCGACCGGTGTTTACGTTTTCAAC 360
|||||||||||| |||||| ||||||||| |||||||||||| |||||||||||||||||
Sbjct 299 TGTGAAATCGAAACAAACCTCTTGGGGAAGTTCCTTGCGACCCGTGTTTACGTTTTCAAC 358
Query 361 TGTTGAGGAATTTTGGAGTTTGTACAATAACTTGAGGCATCCGAACAAGTTAGTTCAAGG 420
||||||||||||||||||||||||||| ||| ||| |||||||| |||||||| ||| ||
Sbjct 359 TGTTGAGGAATTTTGGAGTTTGTACAACAACATGAAGCATCCGAGCAAGTTAGCTCACGG 418
Query 421 AGCTGACTTCTACTGTTTCAAACACAAT-ATCGAACCTAAGTGGGAGGATCCTATTTGTG 479
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 419 AGCTGACTTCTACTGTTTCAAACAC-ATCATTGAACCTAAGTGGGAGGATCCTATTTGTG 477
Query 480 CAAATGGAGGCAAATGGACTATGTCTTTCCCTAAGGAGAAGTCTGATAAGAGCTGGCTCT 539
| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 478 CTAATGGAGGAAAATGGACTATGACTTTCCCTAAGGAGAAGTCTGATAAGAGCTGGCTCT 537
Query 540 ACACTTTGCTTGCTTTGATTGGAGAACAGTTCGATCATGGAGATGAAATATGTGGAGCAG 599
||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 538 ACACTTTGCTTGCATTGATTGGAGAGCAGTTTGATCATGGAGATGAAATATGTGGAGCAG 597
Query 600 TTGTTAACATTAGAGGAAAGCAAGACAGAATATCCATTTGGACCAAAAACGCTTCAAACG 659
|||| |||||||||||||||||||| || ||||| |||||||| ||||| ||||||||||
Sbjct 598 TTGTCAACATTAGAGGAAAGCAAGAAAGGATATCTATTTGGACTAAAAATGCTTCAAACG 657
Query 660 AAGCTGCTCAGGTGAGCATTGGAAAGCAATGGAAGGAGTTTCTGGATTACAACAACAGCA 719
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 658 AAGCTGCTCAGGTGAGCATTGGAAAACAATGGAAGGAGTTTCTCGATTACAACAACAGCA 717
Query 720 TAGGTTTCATCATCCATGAGGATGCGAAGAAGCTCGACAGGAATGCAAGGAACGTTTACA 779
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 718 TAGGTTTCATCATCCATGAGGATGCGAAGAAGCTCGACAGGAATGCAAAGAACGCTTACA 777
Query 780 CTGCTTGAAACCTCTCAAATCTTTGCATTGTTTCAATTACAGTTTTGTATGTGAGAGATC 839
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CCGCTTGAAACCTCTCAAATCTTTGCATTGTTTCAATTACAGTTTTGTATGTGAGAGATC 837
Query 840 TCTATTTATATCATCGAAACATGACTTGACACACTGTCTTTGCTCGTGAGTGTTGATTGT 899
||||||||| | | ||||||||||||||| ||||||||||| ||||||||||||
Sbjct 838 TCTATTTAT--C-T--AAACATGACTTGACAGTCTGTCTTTGCT----AGTGTTGATTGT 888
Query 900 TCAC-AAGCTCTGACATTTCACTTAGTAATATATTAGTATGGT 941
|||| ||||||| |||||||| |||||||||||||||||||||
Sbjct 889 TCACGAAGCTCTAACATTTCATTTAGTAATATATTAGTATGGT 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5