BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493070
Length=2210
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18020.1 | Symbols: APRR2, PRR2 | CheY-like two-component re... 3417 0.0
> AT4G18020.1 | Symbols: APRR2, PRR2 | CheY-like two-component
responsive regulator family protein | chr4:10003291-10007443
REVERSE LENGTH=2199
Length=2199
Score = 3417 bits (1850), Expect = 0.0
Identities = 2088/2197 (95%), Gaps = 39/2197 (2%)
Strand=Plus/Plus
Query 49 agCTTGAGGAAGGGTTTAAGCAGATCTGCAAGAAACACTCTCTC----AA-TGTTTACTT 103
||||||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 1 AGCTTGAGGAAGGATTTAAGCAGATCTGCAAGAAACACTCTCTCAGGTAAGTGTTTACTT 60
Query 104 CTTTTCTGTAGAATCAAACCGGCGGCGACAGTGACGGCGGCGAAAAGCGGCGGTGTTGGC 163
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTTTCCGTAGAATCAAACCGGCGGCGACAGTGACGGCGGCGAAAAGCGGCGGTGTTGGC 120
Query 164 CGCAAAAACGATGCAAAACCAGCTATGGTCATTACCGCTAACGATTTATCAAAATGGGAA 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGCAAAAACGATGCAAAACCAGCTATGGTCATTACCGCTAACGATTTATCAAAATGGGAA 180
Query 224 AGTTTTCCTAAAGGACTTAAGGTTCTTCTTCTCCTCAACGGCGGCGACAGCGACGGAGGT 283
| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct 181 AATTTTCCTAAAGGACTTAAGGTTCTTCTTCTCCTCAACGGCTGTGACAGCGACGGAGAT 240
Query 284 AGCTCCTCAGCCGCCGAGACTCGATCAAAGCTCGAATCAATGGATTATATCGTTACTACA 343
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 241 GGCTCCTCAGCCGCCGAGACTCGATCAGAGCTCGAATCAATGGACTATATCGTTACTACA 300
Query 344 TTCACCGATGAAACTGAAGCACTCTCTGCGGTTGTCAAGAACCCGGAAAGCTTCCACATT 403
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 TTCACCGATGAAACTGAAGCACTCTCTGCGGTTGTCAAGAACCCGGAGAGCTTCCACATT 360
Query 404 GCCATCGTCGAGGTGAATACGAGCGCCGAGAACGAGAGTTTCAAGTTTCTTGAGGGGGCC 463
||||||||||||||||||| |||||| |||| |||||||||||||||||||||| |||
Sbjct 361 GCCATCGTCGAGGTGAATATGAGCGCTGAGAGTGAGAGTTTCAAGTTTCTTGAGGCTGCC 420
Query 464 AAAGAAGTTCTACCTACTATAATGATTTCAACTGATCATTGCATCACTACTACAATGAAA 523
||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 AAAGACGTTCTTCCTACTATAATGATTTCAACCGATCATTGCATCACTACTACAATGAAA 480
Query 524 TGCATAGCGCTTGGTGCAGTGGAGTTCCTTCAAAAACCGCTCTCACCGGAGAAACTAAAG 583
|||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||
Sbjct 481 TGCATAGCGCTTGGTGCAGTTGAGTTCCTACAAAAACCGCTCTCACCGGAGAAATTAAAG 540
Query 584 AACATTTGGCAGCACGTTGTTCATAAGGCATTCAATGACGGTGGAACTAATATTTCGGTA 643
|||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||| ||
Sbjct 541 AACATTTGGCAGCATGTTGTTCATAAGGCATTCAATGATGGTGGAAGTAATGTTTCGATA 600
Query 644 TCACTTAAGCCAGTGAAAGAATCCGTTGTCTCGATGCTTCATCTTGATACCGACATGACA 703
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 TCACTTAAGCCAGTGAAAGAATCCGTTGTCTCGATGCTTCATCTTGAGACCGACATGACA 660
Query 704 AGCGATGAGAAAGATCCAGCGCCATCAACCCCGCAATTGAAACAA-ATTTCACGGTTACT 762
| ||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||
Sbjct 661 ATCGAGGAGAAAGATCCAGCGCCATCAACACCGCAATTGAAACAAGA-TTCACGGTTACT 719
Query 763 AG--GG-GATTGCCAAGAGAACATAAATTTCTCGATGGAAAATGTAAATTCCTCGACCGA 819
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGACGGTGATTGCCAAGAGAACATAAATTTCTCGATGGAAAATGTAAATTCCTCGACCGA 779
Query 820 GAAGGATAACATAGAAG---ATCAAGATATCGGTGAATCTAAATCAGTCGACACTACAAA 876
||| |||||||| |||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 780 GAAAGATAACATGGAAGATCATCAAGACATCGGTGAATCTAAATCAGTCGACACTACAAA 839
Query 877 CCGCGAATTAGATGACGACAAAGTGGTTGTCAAAGAAGAGAGAGGAGACAGTGAAAAAGA 936
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CCGCAAATTAGATGACGACAAAGTGGTTGTCAAAGAAGAGAGAGGAGACAGTGAAAAAGA 899
Query 937 AGAAGAAGCTGAAACCGGAGATCTCATAAGTGAGAAGACAGATTCAGTTGATATTCATAA 996
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 AGAAGAAGGTGAAACCGGAGATCTCATAAGCGAGAAGACAGATTCAGTTGATATTCATAA 959
Query 997 GAAAGAAGATGAGACTAAACCGATTAATAAATCATCCGGGATCAAGAACGTGTCTGGTAA 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GAAAGAAGATGAGACTAAACCGATTAATAAATCATCCGGGATCAAGAACGTGTCTGGTAA 1019
Query 1057 CAAAACTAGTCGAAAGAAGGTGGATTGGACACCAGAGCTGCACAAGAAGTTCGTGCAAGC 1116
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1020 CAAAACTAGTCGAAAGAAGGTGGATTGGACACCAGAGCTGCACAAGAAGTTTGTGCAAGC 1079
Query 1117 AGTTGAGCAACTCGGCCTTGATCAAGCAATACCTTCGCGGATTCTTGAGTTGATGAAAGT 1176
|||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1080 AGTTGAGCAACTCGGCGTTGATCAAGCGATACCCTCGCGGATTCTTGAGTTGATGAAAGT 1139
Query 1177 AGGCACCTTAACAAGACACAATGTAGCTAGTCACCTTCAGAAATTTCGGCAGCATAGGAA 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AGGCACCTTAACAAGACACAATGTAGCTAGTCACCTTCAGAAATTTCGGCAGCATAGGAA 1199
Query 1237 GAATATTCTTCCAAAGGATGATCATAACCATAGATGGATACAATCTAGAGAGAACCATAG 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GAATATTCTTCCAAAGGATGATCATAACCATAGATGGATACAATCTAGAGAGAACCATAG 1259
Query 1297 ACCAAATCAACGTAATTATAACGGTTTTCAACAGCAACACCGTCCCGTGATGGCTTATCC 1356
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1260 ACCAAATCAACGTAATTATAACGTTTTTCAACAGCAACACCGTCCCGTGATGGCTTATCC 1319
Query 1357 CGTTTGGGGTCTTCCCGGTGTTTATCCGCCGGGAGCGATTCCACCTTTGTGGCCGCCGCC 1416
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1320 CGTTTGGGGTCTTCCCGGTGTTTATCCGCCAGGAGCGATTCCACCTTTGTGGCCACCGCC 1379
Query 1417 GCTGCAGTCCATTGGTCAACCACCTCCGTGGCATTGGAAACCACCTTATCCAACGGTGAG 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GCTGCAGTCCATTGGTCAACCACCTCCGTGGCATTGGAAACCACCTTATCCAACGGTGAG 1439
Query 1477 CGGTAATGCATGGGGTTGTCCGGTTGGACCGCCTGTGACCGGATCATATATTACTCCTTC 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CGGTAATGCATGGGGTTGTCCGGTTGGACCGCCTGTGACCGGATCATATATTACTCCTTC 1499
Query 1537 GAATATTACCGCCGGCGGATTTCAATATTCTAACGGAGCTGAAACCGGCTTCAAAATAAT 1596
||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1500 GAATACTACCGCCGGCGGATTTCAATATCCCAACGGAGCTGAAACCGGCTTCAAAATAAT 1559
Query 1597 GCCGGCGACTCAGCCGGACGAGGAAATGATAGATCAAGTGGTTAAAGAAGCGATCAGCAA 1656
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1560 GCCGGCGAGTCAGCCGGACGAGGAAATGTTAGATCAAGTGGTTAAAGAAGCGATAAGCAA 1619
Query 1657 ACCGTGGCTACCGCTACCGCTCGGGCTAAAACCGCCTTCCGCGGACAGTGTTTTGGCTGA 1716
||||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1620 ACCGTGGCTGCCGCTACCGCTCGGGCTAAAACCGCCGTCCGCGGAGAGCGTTTTGGCTGA 1679
Query 1717 GCTATCGCGTCAAGGCATCTCAGCCGTCCCTTCTTCTTCTTGTCTAGTCAACGGCTCTCA 1776
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1680 GCTAACGCGTCAAGGCATCTCAGCCGTCCCTTCTTCTTCTTGTCTAATCAACGGCTCTCA 1739
Query 1777 TCGTCTACGCTGACGTGTCCATGA--AA-CAGAACCCGTAGATATGATGACGTCATGCGT 1833
|||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||
Sbjct 1740 TCGTCTCCGCTGACGTGTCCATGATGAAACAGAACCCGCAGATATGATGACGTCATGCGT 1799
Query 1834 GGCGTACTTGTCCGTGTCTGACGGTCCGAAGCGGGAACTGATTCGGATCCTGAGAGTTGt 1893
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1800 GGCGTACTTGTCCGTGTCTGACGATCCGAAGCGGGAACTGATTCGGATCCTGAGAGTTGT 1859
Query 1894 tttttaattgttcttttttaaatttttGTTGTCATAAAAA--T--------ATT---A-- 1938
|||||||||||| ||||| || |||||||||||||||||| | ||| |
Sbjct 1860 TTTTTAATTGTTGTTTTT-AATTTTTTGTTGTCATAAAAACATTTGTCTCTATTGGTATT 1918
Query 1939 AT-AAAGAAGATCGGACGGTGAAGAT-GAGGGCAACGATGTTAATTTGAGGACCACAAGT 1996
|| |||||||||||||||||| |||| |||| ||||||||||| | ||||||||||||||
Sbjct 1919 ATTAAAGAAGATCGGACGGTGGAGATAGAGG-CAACGATGTTAGTCTGAGGACCACAAGT 1977
Query 1997 GGAATCTGCGGCTGTAAATAGATCTCGGACACGGGATTTGGACAAGTCGGAATCTGACGT 2056
||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1978 GGACTCTGCGGCTGTAAGTAGATCTCGGACACGGGATTTTGACAAGTCGGAATCTGACGT 2037
Query 2057 GTGTGTGTACTCGCTTTTGTGGGTTGTCGAGAATTTTAATAGTTGACACTGTTTTAGGTG 2116
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2038 GTGTGCGTACTCGCTTTTGTGGGTTGTCGAGAATTT-AATAGTTGACACTGTTTTAGGTG 2096
Query 2117 -ATATGAGATATGATGATGATAATAATAAAAAG-TACAACTCGAAGATTCCGTGATGACA 2174
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2097 GATATGAGATATGATGATGATAATAATAAAAAGGTACAACTCAAAGATTCCGTGATGACA 2156
Query 2175 TTTTGTTCTTTTTT-CTATAAATTCCAAGATACACAC 2210
|||||||||||||| ||||||||||||||||||||||
Sbjct 2157 TTTTGTTCTTTTTTTCTATAAATTCCAAGATACACAC 2193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109637990280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5