BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493077
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17940.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1317 0.0
> AT4G17940.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:9965742-9966969 FORWARD LENGTH=1061
Length=1061
Score = 1317 bits (713), Expect = 0.0
Identities = 928/1024 (91%), Gaps = 46/1024 (4%)
Strand=Plus/Plus
Query 26 TGATGAAATCTCTATTGATGAGAACCGGTTCGATGCCGGTTCTTCAAAACCGCTTAATTT 85
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 44 TGATGAAATCTCTATTGATGAGAACCGGTTCGATGCCGGTTCTTCAAAACCGGTTAATTT 103
Query 86 CAGGTGGTTCTTCACGGAAGATGACACCTATCTCCAGGAACAACTCCGTGGAATCATTAC 145
|||||||||| || ||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct 104 CAGGTGGTTCATCGCGGAAGATGACGCCTATCTCCAGGACCAACTCCGTCGAATCATTAT 163
Query 146 CCAGCTACGGCGAGAGATTCGCCGGCGGGAAGATCTCCATCGAGGTTAAGGCTAATGTCG 205
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 164 CCAGCTACGGCGAGAGATTCGCCGGCGGGAAGATTTCGATCGAGGTTAAGGCTAATGTAG 223
Query 206 GGATGCGGAGGGTGTTATCGGAAAGTGATGTGATTAGATCTGAGAGAATGTTGAAAAGTG 265
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 224 GGATGCGGAGGGTGTTATCGGAAAGTGATGTGATTAGATCTGAGAGAATGTTGAAAAGAG 283
Query 266 TTGGATCTAAGCCTTCGCCGGCAAAAATCCCGGAGGATGATGAAGCGGAGGAGGAAGAAA 325
|||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 284 TTGGATCTAAGCCTTCGCCGGCGAGAATCCCGGAGGATGATGAAGCGGGGGAGGAAGAAA 343
Query 326 TTAGGTTTGGAGATGGTTGGGGGTCTTTGATCTCCGGTGGTTTACCTGTGGAGGAGCAAG 385
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 344 TTAGGTTTGCAGATGGTTGGGGGTCTATGATCTCCGGTGGTTTACCTGTGGAGGAGAAAT 403
Query 386 GATTCTCCGGTGGTGGTGGTGGTAGTGGATCTGGTTATAGCGGCGGTTATGGAAAC---G 442
| ||| | ||||| |||| |||| |||||||||||||||||||||||||||||||| |
Sbjct 404 GTTTCACGGGTGGCGGTGTTGGTGGTGGATCTGGTTATAGCGGCGGTTATGGAAACGGAG 463
Query 443 GAGGAGGCGGTTATGAAGATAGGAGCAAGATCGGTGATTATTATCGAGAGATGTTGAAAT 502
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 464 GAGGAGGCGGTTATGAAGATAAGAGCAAGATCGGTGATTATTATCGAGAGATGTTGAGAT 523
Query 503 CAAATCCTAATAATTCGCTTCTTCTGATGAATTACGGCAAGTTTTTGTACGAGGTGGAGA 562
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 524 CTAATCCTAATAATTCGCTTCTTCTGATGAATTACGGCAAGTTTTTGTATGAGGTGGAGA 583
Query 563 AAGATGCAGAGAGAGCTGAAGAGTATTATGGAAGAGCAATACTGGAGAATCCAGGAGATG 622
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 584 AAGATGCAGAGGGAGCTGAAGAGTACTATGGAAGAGCAATACTGGAGAATCCAGGAGATG 643
Query 623 GAGAAGCTTTGTCCATGTATGGAAGATTGATATGGGAAACGAAGAAAGATGAGAAGAGAG 682
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 644 GAGAAGCTTTATCCATGTATGGAAGATTGATATGGGAAACGAAGAGAGATGAGAAGAGAG 703
Query 683 CTCAAGGTTACTTTGATCAAGCTGTTAATGCTTCTCCTAATGATTGTATGGTTTTGGGAT 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 CTCAAGGTTACTTTGATCAAGCTGTTAATGCTTCTCCTAATGATTGTATGGTTTTGGGAT 763
Query 743 CGTATGCTCATTTCATGTGGGAGGCAGAGgatgatgatgatgatga--A-GAAGA-GTT- 797
| ||||| | |||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 764 CATATGCACGTTTCATGTGGGAGGCAGAGGATGATGATGATGATGATGAAGAAGAAGAAG 823
Query 798 AA------TGG----CTGCATCACCAGTCATGGTTTCTGCAGTTTAGAGA-TGAAAAAG- 845
|| ||| ||||||||||| ||||||||||||||||||||||| | || | |
Sbjct 824 AAGAAGAATGGATGGCTGCATCACCACTCATGGTTTCTGCAGTTTAGAGACT-AACACGA 882
Query 846 -GA-G-T-AATG--GA-GTC-TA-A-ATTAAGATTATGTACCAAGTATCGATCTTTAGT- 894
|| | | || | || || | | | |||||||||||| |||||||| | |||| |
Sbjct 883 CGAAGATGAA-GAAGAAGTAATGGAGACTAAGATTATGTATCAAGTATCAACCTTTTTTT 941
Query 895 -GT--ATTTCACTGTTGTATTTTACTAACTTTTTTGTTGGTT-TAACCTGAAGAGTAATG 950
|| |||||||||| | |||||||||||||| |||| | |||||||||||||||||
Sbjct 942 TGTCTATTTCACTGTC-T-TTTTACTAACTTTT--GTTG-TAATAACCTGAAGAGTAATG 996
Query 951 AA--CATGTATGTTGAA-GAAAACGAATGTAACCTTATTATAAGAGAATAAAAGTGCTTT 1007
|| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 AAAACATGTATGT-GAAAGAAAACGAATGTAACCTTATTATAAGAGAATAAAAGTGCTTT 1055
Query 1008 TGTA 1011
||||
Sbjct 1056 TGTA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5