BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493082
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17900.1 | Symbols: | PLATZ transcription factor family pro... 1694 0.0
> AT4G17900.1 | Symbols: | PLATZ transcription factor family protein
| chr4:9945870-9948078 FORWARD LENGTH=1241
Length=1241
Score = 1694 bits (917), Expect = 0.0
Identities = 1154/1257 (92%), Gaps = 62/1257 (5%)
Strand=Plus/Plus
Query 1 AAGGAGGTTGGGTTGGTCGACTTTGCAAAGATAAGAG-AGACTGAct--ctcctttctct 57
|||||||||||||||||||||||||| |||||||||| ||| |||| || || |||||
Sbjct 1 AAGGAGGTTGGGTTGGTCGACTTTGCTAAGATAAGAGAAGAGAGACTGACT-CTCTCTCT 59
Query 58 ctctatctcctcattcttctctctttttaccttctctgcaagaaatcttcacttctctct 117
||||| ||| ||||||||||||| ||||||||||||| ||||||||||||| || | |
Sbjct 60 CTCTAACTCTTCATTCTTCTCTC-TTTTACCTTCTCTCCAAGAAATCTTCA---CT-T-T 113
Query 118 ctctctAGaaaaaaaGTTGGAAGCTGACTCGAAAAAGACTCTCTTTTTCTTCTTCCTGCA 177
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 114 CTCTCTAG-AAAAAAGTTGGAAGCTGACTCGATAAAGACTCTCTTTTTCTTCTT-CTTC- 170
Query 178 ACTACGATAATGGCGATCGAGGATCAAGAGAACACAATCCGTGAAATCAAGCCTAAGAAC 237
|| | | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 171 -CTGC-A-AATGGCGATCGAGGATCAAGAGAACACAATCCGTGAAATCAAACCTAAGAAC 227
Query 238 CGGAGAATCATGGGAGCTGGTGGACCGGAGGAGGAAGAGAACCGGTGGCCGCCGTGGTTG 297
| |||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||
Sbjct 228 AGAAGAATCATGGGAGCTGGTGGTCCGGAGGAAGAGGAGAACCGGTGGCCGCCATGGTTG 287
Query 298 AAACCTTTGCTTAAAGAGCAATTCTTTGTTCATTGCAAGTTTCATGGAGACTCTCATAAG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 AAACCTTTGCTTAAAGAGCAATTCTTTGTTCATTGCAAGTTTCATGGAGACTCTCATAAG 347
Query 358 AGTGAATGCAATATGTATTGCTTAGACTGCACCAATGGCCCACTTTGCTCTCTTTGTCTT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 AGTGAATGCAATATGTATTGCTTAGACTGCACCAATGGCCCACTTTGCTCTCTTTGTCTT 407
Query 418 GCTCATCACAAGGATCATCGCACCATTCAGATAAGGAGATCTTCTTATCATGATGTTATA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 GCTCATCACAAGGATCATCGCACCATTCAGATAAGGAGATCTTCTTATCATGATGTTATA 467
Query 478 AGGGTGAATGAGATACAAAAGTATCTTGATATAGCTGGGATCCAAACATATGTGATCAAT 537
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 468 AGGGTGAATGAGATACAAAAGTATCTTGATATAGGTGGGATCCAAACCTATGTGATCAAT 527
Query 538 AGTGCTAAAGTCGTCTTCTTGAATGAGAGGCCTCAGCCTAGGCCCGGGAAAGGTGTAACC 597
|||||||||||||||||| ||||||||||||||||||||||||| |||||||| || |||
Sbjct 528 AGTGCTAAAGTCGTCTTCCTGAATGAGAGGCCTCAGCCTAGGCCTGGGAAAGGAGTGACC 587
Query 598 AATACCTGCAAGGTTTGCTATCGTAGCCTCGTCGATGATAGCTTCCGCTTCTGCTCGCTT 657
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 588 AATACCTGCAAGGTTTGCTATCGTAGCCTCGTTGATGATAGCTTCCGCTTCTGCTCTCTT 647
Query 658 GGCTGCAAGATTGCTGGAACATCAAGAGGCTTTGATAAGGGAAGGGAGAACCTACTGATG 717
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 648 GGCTGCAAGATTGCTGGAACATCAAGAGGCTTTGAAAAGGGAAGGGAGAACCTGCTAATG 707
Query 718 GAAACAGAGGATTCAAGTAGCAGCATTGGAATTGGGAAGAACATTACAAATCTCCAGAGT 777
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 708 GAAACAGAGGATTCAAGTAGCAGCATTGCAATTGGGAAGAACATTACAAATCTCCAGAGT 767
Query 778 TTCAGCCCATCAACACCTCCACTTACTA------GTAATTGCAGAATCGTCAAGCGAAGA 831
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 768 TTCAGCCCATCAACACCTCCACTTACTACATCTAGTAACTGCAGAATCGTCAAGCGAAGA 827
Query 832 AAGGGAATTCCTCACCGATCTCCGATGGGATAAGAACCGAGATTACACACAAAGGGTTTA 891
||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct 828 AAGGGAATTCCTCACCGATCTCCAATGGGATAAGAACCGAGATTACACACA--GGTTTTA 885
Query 892 GCTAATACAGAGACTTCTTCTGTCTCTTCTCTTTCCTCGTATACCAAA-GAAATGGTCTT 950
|||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 886 GCTAATACAGAGGCTTCTTCTGTCTCTTATCTTTCCTCGTATACCAAAAGAAATGGTCTT 945
Query 951 TTGCTTGTGTTAGCaaaaaaaGAAAGGCCTTAAGTTAGGTTTTGTTGT----------G- 999
|||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 946 TTGCTTGTGTTAGCAAAAAAAGAAAGGCCTTAAGTTAGGTTTTGTTGTCCTACTACTTGG 1005
Query 1000 --AA-TATGT-AAT--GT---G--CTT-GTATATGTGATGCAAAAAGGGTAGAAAGGGAA 1047
|| ||||| ||| || | ||| ||||||| |||||||||||||||||| ||||
Sbjct 1006 GCAAATATGTGAATATGTAATGTGCTTTGTATATG--ATGCAAAAAGGGTAGAAATGGAA 1063
Query 1048 ATATAGGGGTTTTAGTGGGCTAAAAATGGGAATAAAAACAAAAT-AGTTTTTGGTTTTCA 1106
||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||
Sbjct 1064 ATATAGGGGTTTTAGTGGGCTAAAAGTAAGAATAAAAACAAAATTAGTTTTTGGTTTTCA 1123
Query 1107 TCTATGTATGCATGGTGTAAATTTGGTTTGGTTAGGTGCATACATGGATCTTGaataat- 1165
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 TTTATGTATGCATGGTGTAAATTTGGTTTGGTTAGGTGCATACATGGATCTTGAATAATG 1183
Query 1166 aataa-a----taaat-aat---GAGATTACATAC-TTTGTGTATTTTTTGCGATTT 1212
||||| | ||||| ||| |||| ||| ||| |||||||||||||||||||||
Sbjct 1184 AATAATAACAATAAATTAATAATGAGAATACCTACCTTTGTGTATTTTTTGCGATTT 1240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59537846370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5