BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493087
Length=2103
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bin... 2444 0.0
AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bin... 484 1e-135
> AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding
family protein | chr4:9933366-9935586 REVERSE LENGTH=2221
Length=2221
Score = 2444 bits (1323), Expect = 0.0
Identities = 1751/1938 (90%), Gaps = 107/1938 (6%)
Strand=Plus/Plus
Query 1 AACAATCAAACCAAACATC-AATA-TTTGCTTTAAA-AACTTACTTCTCTCCTCTGTC-C 56
||||||||||||||||| | |||| ||||| ||||| ||||||||||||||||||||| |
Sbjct 6 AACAATCAAACCAAACA-CAAATATTTTGC-TTAAAGAACTTACTTCTCTCCTCTGTCTC 63
Query 57 TCACCGGaaaaacaaaaa-aaaaGTC---T-T--CT-C-T-------TTTTTATGTCTCC 100
|||||||||||||||||| || | | || | | | ||||||||||
Sbjct 64 TCACCGGAAAAACAAAAAGTCTTCTCTTTTATAACTACGTCAGAGAACTGTTATGTCTCC 123
Query 101 GACGAATGTTCAATTAACCGATTACCATCTCAACCAATCAACCAACGG-TACAACAAATC 159
||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 124 GACGAATGTTCAAGTAACCGATTACCATCTCAACCAATCAA-AAACGGATACAACAAATC 182
Query 160 TCTGGTCAACCGACGACGATGCATCGGTAATGGAAGCTTTCAT---CGGCGGCTCCGATC 216
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 183 TCTGGTCAACCGACGACGATGCATCGGTAATGGAAGCTTTCATCGGCGGCGGCTCCGATC 242
Query 217 ATTCTTCTCTTTTtcctccacttcctcctcctcctccacctccGGTCAACGAAGATAATC 276
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 243 ATTCTTCTCTTTTTCCTCCACTTCCTCCTCCTCCTCTTCCTCAAGTCAACGAAGATAATC 302
Query 277 TCCAGCAACGACTCCAAGCTTTAATAGAAGGAGCAAACGAGAGCTGGACTTACGCTGTGT 336
|||||||||| |||||||||||||| |||||||||||||||| |||||||||||| ||||
Sbjct 303 TCCAGCAACGTCTCCAAGCTTTAATCGAAGGAGCAAACGAGAACTGGACTTACGCCGTGT 362
Query 337 TCTGGCAATCATCTCACGATTTCGCCGGAGAAGACGACGGAGTAAGAACCAACAACAACA 396
|||||||||||||||||| ||||||||||| | | ||| || |||||||||||
Sbjct 363 TCTGGCAATCATCTCACGGTTTCGCCGGAG-A-A-GAC--------AA-CAACAACAACA 410
Query 397 ACACAACCTTGTTAGGTTGGGGAGATGGTTATTACAAAGGAGAAGAAGAGAAATCTAGAA 456
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 411 ACACAGTGTTGTTAGGTTGGGGAGATGGTTATTACAAAGGAGAAGAAGAGAAGTCTAGAA 470
Query 457 AGAAGAAACCAAATCCAGCTTCTGCAGCTGAACAAGAGCATCGTAAGAGAGTGA-TACGA 515
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 471 AGAAGAAATCAAATCCAGCTAGTGCAGCTGAACAAGAGCATCGTAAGAGAGTGATTA-GA 529
Query 516 GAACTCAACTCTTTAATCTCCGGTGGTGGTGGAGGAGGAGGAGATGAAGCTGGAGATGAA 575
|| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 530 GAGCTCAACTCTTTAATCTCCGGTGGT-GT--AGGAGGAGGAGATGAAGCTGGAGATGAA 586
Query 576 GAAGTTACAGATACTGAATGGTTCTTCTTAGTTTCAATGACACAGAGCTTTGTCAATGGC 635
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 587 GAAGTTACAGATACTGAATGGTTCTTCTTAGTTTCAATGACACAGAGCTTTGTCAAGGGT 646
Query 636 ACTGGTTTACCTGGTCAAGCTTTCTCGAACTCGA-ACACGATTTGGCTT-TCTGGGTCTA 693
|||||||||||||||||||||||||| || || | ||||||||||| || ||||| ||||
Sbjct 647 ACTGGTTTACCTGGTCAAGCTTTCTCAAATTC-AGACACGATTTGG-TTATCTGGTTCTA 704
Query 694 ATGCTTTAGCTGGATCAAGTTGTGAGAGAGCTCGTCAAGGTCAGATTTATGGGTTACAAA 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 ATGCTTTAGCTGGATCAAGTTGTGAGAGAGCTCGTCAAGGTCAGATTTATGGGTTACAAA 764
Query 754 CAATGGTGTGTGTAGCGACTGAGAACGGTGTCGTTGAGCTTGGTTCGTCGGAGATTATAC 813
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 765 CAATGGTGTGTGTAGCGACAGAGAATGGTGTCGTTGAGCTTGGTTCGTCGGAGATTATTC 824
Query 814 ATCAAAGTTCAGATCTTGTTGATAAAGTTGACACCTTTTTC------AAC---GGTGGTG 864
||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 825 ATCAAAGTTCAGATCTTGTTGATAAAGTTGACACCTTTTTCAATTTTAACAATGGTGGTG 884
Query 865 GTGAATCTGGTTCTTGGGCGTTTAATTTGAATCCAGATCAAGGAGAGAATGATCCAGGTT 924
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 GTGAATTTGGTTCTTGGGCGTTTAATTTGAATCCAGATCAAGGAGAGAATGATCCAGGTT 944
Query 925 TGTGGATTAGTGAACCTAATAACACTGGTGTTGAATCTGGTCTTGTAGCTGCTCCGTTGA 984
|||||||||||||||| | | | ||||||||| ||||||||||||||||||||| |
Sbjct 945 TGTGGATTAGTGAACC---T-A-A-TGGTGTTGACTCTGGTCTTGTAGCTGCTCCG--G- 995
Query 985 TGATGAATAATGGTGGTAATGACTCAACTTCTAATTCTGATTCTCAACCAATTTCGAAGC 1044
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 996 TGATGAATAATGGTGGAAATGACTCAACTTCTAATTCTGATTCTCAACCAATTTCTAAGC 1055
Query 1045 TTTGTAATGGAAGCTCTG-TG-GAA----AA-CC--AAGTTTTGAAATCTGGTGAAATGG 1095
|||||||||||||||||| || || || || ||||| |||||||| |||||||||
Sbjct 1056 TTTGTAATGGAAGCTCTGTTGAAAACCCTAACCCTAAAGTTCTGAAATCTTGTGAAATGG 1115
Query 1096 TGAGAGTT-AAGAATGGGATTGAGAATGGATTCTCTGGTCAAAGCCGGT-TTATGGAAGA 1153
||| | || |||||||||||||||||||| || | ||| | | || | || |
Sbjct 1116 TGA-ATTTCAAGAATGGGATTGAGAATGG----TCAAG---AAGAAGATAGTA-GTAATA 1166
Query 1154 AGATAAGAGATCTCCGGTTTCGAACAATGAAGAAGGGATGCTTTCTTTTACCTCTGTTCT 1213
|| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1167 AG--AAGAGATCACCGGTTTCGAATAATGAAGAAGGGATGCTTTCTTTTACCTCTGTTCT 1224
Query 1214 TCCACGGCCTGCGAAATCCGGTGACTCGAATCACTCTGATCTTGAAGCTTCAGTGGCTAA 1273
| | | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 T-------C--C---AT---GTGACTCGAATCACTCTGATCTTGAAGCTTCAGTGGCTAA 1269
Query 1274 AGAAGCTGAGAGTAATC-GAATTGTGGTTGAACCGGAGAAGAAACCGAGGAAACGAGGGA 1332
||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 1270 AGAAGCTGAGAGTAA-CAGAGTTGTGGTTGAACCGGAGAAGAAACCGAGGAAACGAGGGA 1328
Query 1333 GAAAACCGGCGAATGgaagagaagagcctttgaatcatgtagaggcagagagacagagaa 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 GAAAACCGGCGAATGGAAGAGAAGAGCCTTTGAATCATGTAGAGGCAGAGAGACAGAGAA 1388
Query 1393 gagagaagttgaatcagagaTTTTACTCTTTGAGAGCTGTGGTTCCTAATGTGTCTAAGA 1452
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 1389 GAGAGAAGTTGAATCAGAGATTCTATTCTTTAAGAGCTGTGGTTCCTAATGTGTCTAAGA 1448
Query 1453 TGGATAAAGCTTCTCTTTTAGGAGACGCGATTTCGTATATCAATGAGCTTAAGTCTAAGT 1512
|||||||||||||||| |||||||| || ||||||||||||| |||||||||||||||||
Sbjct 1449 TGGATAAAGCTTCTCTATTAGGAGATGCTATTTCGTATATCAGTGAGCTTAAGTCTAAGT 1508
Query 1513 TGCTAAAGGCTGAATCTGATAAAGAAGAGCTGCAGAAGCAGATTGATGGGATGA-TCAAA 1571
||| ||||||||||||||||||||||||| |||||||||||||||||| ||||| | |||
Sbjct 1509 TGCAAAAGGCTGAATCTGATAAAGAAGAGTTGCAGAAGCAGATTGATGTGATGAAT-AAA 1567
Query 1572 GAGGCGGGGAATTCGAAAAGTTCGGTTAAAGATCGAAAATGTTTGATTCAAGAATCGGGT 1631
|| ||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||| ||
Sbjct 1568 GAAGCGGGAAATGCGAAAAGTTCGGTAAAAGATCGAAAATGTTTGAATCAAGAATCGAGT 1627
Query 1632 GTGGTGATAGAGATGGAGGTTGATGTGAAGATTATTGGTTGGGATGCAATGATAAGGATT 1691
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 GTGTTGATAGAGATGGAGGTTGATGTGAAGATTATTGGTTGGGATGCAATGATAAGGATT 1687
Query 1692 CAATGCAGTAAGAGAAATCATCCTGGTGCTAAATTCATGGAAGCACTCAAGGAATTGGAT 1751
||||| |||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1688 CAATGTAGTAAGAGGAATCATCCTGGTGCTAAGTTCATGGAAGCACTTAAGGAGTTGGAT 1747
Query 1752 TTGGAAGTGAATCATGCGAGTTTATCGGTAGTGAATGATCTTATGATCCAACAAGCGACT 1811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1748 TTGGAAGTGAATCATGCGAGTTTATCGGTAGTGAATGATCTTATGATCCAACAAGCGACT 1807
Query 1812 GTGAAAATGGGGAATCAGTTTTTCACACAAGATCAGCTCAAGGTTGCTCTAATGGATAAA 1871
|||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| |||
Sbjct 1808 GTGAAAATGGGGAATCAGTTTTTCACGCAAGATCAACTCAAGGTTGCTCTAACGGAGAAA 1867
Query 1872 GTCGGAGAATGTCCATGA 1889
|| |||||||||||||||
Sbjct 1868 GTTGGAGAATGTCCATGA 1885
Score = 235 bits (127), Expect = 1e-60
Identities = 143/150 (95%), Gaps = 3/150 (2%)
Strand=Plus/Plus
Query 1889 ACACAAGTTTCTCTTGTGAATGTAGTTTGTAAACTCTATTTGGGTAAGGGTAATTTTGCA 1948
|||||||||||||| |||||||||| |||||||||||| ||| ||||||||||||||| |
Sbjct 1987 ACACAAGTTTCTCTAGTGAATGTAG-TTGTAAACTCTA-TTGTGTAAGGGTAATTTTGTA 2044
Query 1949 GTACCCACTTGTTGCTATTGAATGCTTGTTAGAGAGGATTCTTAGTGTAGTATATGATTA 2008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2045 GTACCCACTTGTTGCTATTGAATGCTTGTTAGAGAGGATTCTTAGTGTAGTATATGATTA 2104
Query 2009 GGTTGGGGTTTGTGGTTTCATGA-ATAAAT 2037
||||||||||||| ||||||||| ||||||
Sbjct 2105 GGTTGGGGTTTGTTGTTTCATGAGATAAAT 2134
Score = 76.8 bits (41), Expect = 8e-13
Identities = 58/65 (89%), Gaps = 6/65 (9%)
Strand=Plus/Plus
Query 2041 TTTGG--TGTTGGTGTATGTATGTAAATAAGGCTTTAATTTGTTAGAAATAAAACAAATG 2098
||||| ||||||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 2161 TTTGGTTTGTTGGTGTATGTATGTAAATAAGGCTTT--T--GTTAGAAATAAGACAAATG 2216
Query 2099 GGACT 2103
|||||
Sbjct 2217 GGACT 2221
> AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding
family protein | chr5:18974231-18976009 FORWARD LENGTH=1779
Length=1779
Score = 484 bits (262), Expect = 1e-135
Identities = 503/614 (82%), Gaps = 37/614 (6%)
Strand=Plus/Plus
Query 1293 ATTGTGGTTGA---ACCGGAGAAGAAACCGAGGAAACGAGGGAGAAAACCGGCGAATGga 1349
||||| ||||| |||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 1168 ATTGTTGTTGAGCCACCGGAGAAGAAGCCGAGGAAACGGGGGAGGAAACCGGCGAATGGG 1227
Query 1350 agagaagagcctttgaatcatgtagaggcagagagacagagaagagagaagttgaatcag 1409
||||||||||| ||||||||||| || |||||||| ||||||||||||||||| || |||
Sbjct 1228 AGAGAAGAGCCGTTGAATCATGTTGAAGCAGAGAGGCAGAGAAGAGAGAAGTTAAACCAG 1287
Query 1410 agaTTTTACTCTTTGAGAGCTGTGGTTCCTAATGTGTCTAAGATGGATAAAGCTTCTCTT 1469
||||| ||||||||||||||||| |||||||| || || ||||||||||||||||| |||
Sbjct 1288 AGATTCTACTCTTTGAGAGCTGTTGTTCCTAACGTTTCGAAGATGGATAAAGCTTCGCTT 1347
Query 1470 TTAGGAGACGCGATTTCGTATATCAATGAGCTTAAGTCTAAGTTGCTA--AAGGCTGAAT 1527
| ||||||||||||||||||||||||||||||||||| ||| ||| | ||| | || |
Sbjct 1348 CTCGGAGACGCGATTTCGTATATCAATGAGCTTAAGTCGAAGCTGC-AGCAAG-CGGAGT 1405
Query 1528 CTGATAAAGAAGAGCTGCAGAAGCAGATTGATGGGATGA-TCAAAGAGGCGGGG-AATTC 1585
|||||||||| ||| | |||||| || | |||||||||| | || || | || |||
Sbjct 1406 CTGATAAAGAGGAGATTCAGAAGAAGCTAGATGGGATGAGT-AAGGAAG-GGAATAATGG 1463
Query 1586 GAAAAGTT-CGGTT-AA----A---GATCG-AAAATGTTTGATTCAAGAATC---GG-GT 1631
|||| ||| ||| | || | || || |||| ||| || |||||| || || |
Sbjct 1464 GAAAGGTTGCGGGTCAAGGGCAAAAGAACGGAAAA-GTTCGAATCAAGATTCTACGGCGA 1522
Query 1632 GTGGTGATAGAGATGGAGGTTGATGTGAAGATTATTGGTTGGGATGCAATGATAAG-GAT 1690
|| | ||||| |||||| ||||||| ||||| || |||||||||| |||||| | | |
Sbjct 1523 GTTCT-ATAGAAATGGAGATTGATGTTAAGATCATAGGTTGGGATGTGATGATACGTG-T 1580
Query 1691 TCAATGCAGTAAGAGAA-ATCATCCTGGTGCTAAATTCATGGAAGCACTCAAGGAATTGG 1749
|||||| | |||| || ||||||| ||||||| |||||||||||||| ||||||||||
Sbjct 1581 ACAATGCGGCAAGA-AAGATCATCCCGGTGCTAGGTTCATGGAAGCACTTAAGGAATTGG 1639
Query 1750 ATTTGGAAGTGAATCATGCGAGTTTATCGGTAGTGAATGATCTT-ATGATCCAACAAGCG 1808
|||||||||||||||||||||||||||| || ||||||||| || ||||| ||||||||
Sbjct 1640 ATTTGGAAGTGAATCATGCGAGTTTATCCGTTGTGAATGAT-TTGATGATTCAACAAGCT 1698
Query 1809 ACTGTGAAAATGGGGAATCAGTTTTTCACA-CAAGATCAGCTCAAGGTTGCTCTAATGGA 1867
|| ||||| ||||||| || ||||||| | || || |||||||| |||||| | ||| |
Sbjct 1699 ACGGTGAAGATGGGGAGCCAATTTTTCA-ATCATGACCAGCTCAAAGTTGCTTTGATG-A 1756
Query 1868 T-AAAGTCGGAGAA 1880
||||||||||||
Sbjct 1757 CGAAAGTCGGAGAA 1770
Score = 294 bits (159), Expect = 2e-78
Identities = 445/577 (77%), Gaps = 44/577 (8%)
Strand=Plus/Plus
Query 414 TGGGGAGATGGTTATTACAAAGGAGAAGAAGAGAAATCTAGAAAGAAGAA-ACCAA-ATC 471
|||||||||||||| ||||||||||| ||||| ||| || |||||||| | ||| | |
Sbjct 274 TGGGGAGATGGTTACTACAAAGGAGAGGAAGATAAA--GAG-AAGAAGAAGAACAACA-C 329
Query 472 CAGCTTCTGCAGCTGAACAAGAGCATCGTAAGAGAGTGATACGAGAACTCAACTCTTTAA 531
|| | | | || || ||||||||||| || ||||| ||||| || || ||||| ||||
Sbjct 330 CAAC-AC-G--GCGGAGCAAGAGCATCGGAAAAGAGTAATACGTGAGCTTAACTCGTTAA 385
Query 532 TCTCCGGTGGTGGTGGAGGAGGAGGAGATGAAGCTGGA-GATGAAGAAGTTACAGATACT 590
||||||| || | | || | |||||| | | ||||||||||| |||||||||
Sbjct 386 TCTCCGGCGG-AATTG-GG-GTTTCCGATGAATC-AAACGATGAAGAAGTAACAGATACT 441
Query 591 GAATGGTTCTTCTTAGTTTCAATGACACAGAGCTTTGTCAATGGCACTGGTTTACCTGGT 650
|||||||||||||||||||| ||||| || ||||| || || || |||| | || ||
Sbjct 442 GAATGGTTCTTCTTAGTTTCGATGACTCAAAGCTTCGTTAACGGTGTTGGTCTCCCCGGA 501
Query 651 CAAGCTTTCTCGAACTCGAACACGATTTGGCTT-TCTGGGTCTAATGCTTTAGCTGGATC 709
|| |||||| ||||| ||||||| || || |||||| ||||||| | || ||
Sbjct 502 GAATCTTTCTTAAACTCTCGTGTGATTTGG-TTATCCGGGTCTGGTGCTTTAACCGGGTC 560
Query 710 AAGTTGTGAGAGAGCTCGTCAAGGTCAGATTTATGGGTTACAA-ACAATGGTGTGTGTAG 768
||||||| ||||| |||||||||||||||| |||||| || || ||||||||| | |
Sbjct 561 GGGTTGTGAAAGAGCGGGTCAAGGTCAGATTTACGGGTTA-AAGACGATGGTGTGTATCG 619
Query 769 CGACTGAGAACGGTGTCGTTGAGCTTGGTTCGTCGGAGATTATACA-TCAAAGTTCAGAT 827
||||| | ||||| |||||||||||||||||||||||| ||||| | |||||| ||||||
Sbjct 620 CGACTCAAAACGGCGTCGTTGAGCTTGGTTCGTCGGAGGTTATA-AGTCAAAGCTCAGAT 678
Query 828 CTTGTTG-ATAAAGTTGACACCTT-TTT-----CAAC---GGTGGTGGTGA-A-TC-TG- 873
|| | || |||||||| ||| ||| ||| |||| |||||||| | | | ||
Sbjct 679 CT-GATGCATAAAGTTAACAACTTGTTTAATTTCAACAACGGTGGTGGAAACAATGGTGT 737
Query 874 -G----TTCTT-G-GGCGTTT-AATTTGAATCCAGATCAAGGAGAGAATGATCCAGGTTT 925
| ||||| | || |||| ||| |||||||||||||||||||||||||||||| |||
Sbjct 738 TGAAGCTTCTTCGTGGGGTTTTAATCTGAATCCAGATCAAGGAGAGAATGATCCAGCTTT 797
Query 926 GTGGATTAGTGAACCTAATAACACTGGTGTTGAATCT 962
||||||||||||||| | ||||| || | ||||||
Sbjct 798 GTGGATTAGTGAACCGACGAACACCGGAATCGAATCT 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104266531965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5