BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493091
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17830.2 | Symbols: | Peptidase M20/M25/M40 family protein ... 2318 0.0
AT4G17840.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 305 7e-82
> AT4G17830.2 | Symbols: | Peptidase M20/M25/M40 family protein
| chr4:9915813-9918187 FORWARD LENGTH=1579
Length=1579
Score = 2318 bits (1255), Expect = 0.0
Identities = 1449/1539 (94%), Gaps = 28/1539 (2%)
Strand=Plus/Plus
Query 1 CTTATTTGTTTTGTTTGCAAATCACaaaaaaaaaaaCCACATCTTTGGTG---CAACAAT 57
|||||| |||||||||||||| | | |||| ||||| |||||||||||| ||| |||
Sbjct 49 CTTATTAGTTTTGTTTGCAAA-CCCCAAAAGAAAAA--ACATCTTTGGTGTAACAAAAAT 105
Query 58 GGCTTCGTATTCCAAAGCACTGGTTGGATTCATAGGCTCTCTTGACAAAGACTCATACGT 117
|||||||| ||||||||||||| | | || ||||||||||||||||||||||||||||||
Sbjct 106 GGCTTCGTCTTCCAAAGCACTGATCGAATCCATAGGCTCTCTTGACAAAGACTCATACGT 165
Query 118 TTCTCTCTTATCAAAACTCATCGGCGAGTCAAAATTCGTCCAGAACAATCCTCCGGAGCT 177
||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct 166 TTCTCTCTTATCAAAACTCATAGGCGAATCTAAATTCGTCCAGAACAATCCGCCGGAGCT 225
Query 178 CATCCCTCAAGAGGACCTAATCGTCAAACACGTCCTTGAGTCTCTCCGTCCTTATAGCAC 237
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 226 CATCCCTCAAGAGGACCTAATCGTCAAACACGTCCTTGACTCTCTCCGTCCTTATAGCAC 285
Query 238 AGAAACTGGTGGTGGTCCTCTGGTGATCAATCATGTGGCGTATCATTCAGGCAGAGGTAA 297
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 286 AGAAACTGGTGGTGGTCCTCTGGTGATCAATCATGTCGCGTATCATTCAGGTAGAGGTAA 345
Query 298 TCTCATCGTTGAGTACCCAGGATCTGTTCCCGGAAAGATCTTGTCTTTCGTCGGAATGCA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TCTCATCGTTGAGTACCCAGGATCTGTTCCCGGAAAGATCTTGTCTTTCGTCGGAATGCA 405
Query 358 TATGGACGTCGTCACTGCGAATCCTGATGATTGGGAATTTGATCCTTTCTCGCTAAGCAT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TATGGACGTCGTCACTGCGAATCCTGATGATTGGGAATTTGATCCTTTCTCGCTAAGCAT 465
Query 418 AGATGGTGATAAGCTTCGTGGTCGTGGGACAACAGATTGTCTTGGTCACGTTGCTCTTGT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 AGATGGTGATAAGCTTCGTGGTCGTGGGACAACAGATTGTCTTGGTCACGTTGCTCTTGT 525
Query 478 CACCGAACTCATGAAGAGACTCGGGCAAACTAAACCGGCACTGAAATCAACGGTGGTGGC 537
||| ||||||||||||| |||||||||| | |||||||| |||||||||||||||||||
Sbjct 526 CACTGAACTCATGAAGAAACTCGGGCAAGCCAAACCGGCGTTGAAATCAACGGTGGTGGC 585
Query 538 GGTTTTCATCGCTAGTGAAGAGAACTCTTCCATTCCTGGTGTTGGTGTGGACATGCTGGT 597
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 GGTTTTCATCGCTAGCGAAGAGAACTCTTCCATTCCTGGTGTTGGTGTGGACATGCTGGT 645
Query 598 TAAAGACAAACTTCTTGATAAGCTCAAATCC-G------G--A----CCA-T-TGTATTG 642
|||||||||||||||||||||||||||||| | | | ||| | |||||||
Sbjct 646 GAAAGACAAACTTCTTGATAAGCTCAAATCCGGACCCTTGTTAGTTTCCATTCTGTATTG 705
Query 643 GATTGATACGGCGGATAAGCAGCCGTGTGTTGGAACTGGCGGTATGATACCGTGGAAGAT 702
||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 706 GATTGATACAGCGGATAAGCAGCCGTGTGTTGGAACTGGGGGTATGATACCATGGAAGCT 765
Query 703 TCATTTTACCGGAAAGCTTTTCCATAGCGGTTTAGCTCACAAGGCGATTAACGCAATGGA 762
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 766 TCAGTTTACTGGAAAGCTTTTCCATAGCGGTTTAGCTCACAAGGCGATTAACGCGATGGA 825
Query 763 GTTAGCAATGGAAGGGCTGAAGGAAATCCAAGCCCGGTTCTATAGAGACTTTCCGCCTCA 822
|||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 826 GTTAGCAATGGAAGGGCTTAAGGAAATCCAAGCTCGGTTCTACAGAGACTTTCCGCCTCA 885
Query 823 CCCACAAGAGAAAGTTTATGGTTTTGCAACACCATCCACCATGAAGCCTACACAGTGGTC 882
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 886 CCCACAAGAGGAAGTTTATGGTTTTGCAACACCATCCACCATGAAGCCAACACAGTGGTG 945
Query 883 TTATCCAGCAGGCGGAATCAACCAAATCCCTGGAGAATGTACCGTTTGC-GGTGATGTCA 941
|||||||||||| ||||||||||||||||| ||||||||||| |||| | ||||||||||
Sbjct 946 TTATCCAGCAGGTGGAATCAACCAAATCCCCGGAGAATGTACTGTTT-CGGGTGATGTCA 1004
Query 942 GGTTAACTCCTTTCTACGAAGTGAAGGAAGTGATAACGAAGTTGCAAGAGTATGTTGACG 1001
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 GGTTGACTCCTTTCTATGACGTGAAGGAAGTGATAACGAAGTTGCAAGAGTATGTTGACG 1064
Query 1002 ACATAAACAGTAACATTGAGAAGCTCGAAACCCGTGGTCCTGTTTCAAAATATGTCTTAC 1061
|||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1065 ACATAAACGGTAACATAGAGAGGCTCGAAACCCGTGGTCCTGTTTCAAAATATGTCTTAC 1124
Query 1062 CAGACGAGAATTTACGGGGAAGGCTCACGTTAAGCTTTGATGAAGCATCAGCTGGAGTTG 1121
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1125 CAGATGAGAATTTACGGGGAAGGCTCACGTTAAGTTTTGATGAAGCATCAGCTGGAGTTG 1184
Query 1122 CGTGTAATCTTGATTCCCCCGGCTTTCATGTTCTATGCAAAGCAACCGAAGAAGTTGTTG 1181
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1185 CGTGTAATCTTGATTCTCCCGGCTTTCACGTTCTATGCAAAGCAACCGAAGAAGTTGTTG 1244
Query 1182 GACACGTGAAACCTTACTCGATCACCGGTACTTTGCCTCTAATCCGAGACCTCAAGGATG 1241
|||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1245 GACACGTGAAGCCTTACTCGATCACCGGTACTTTACCTCTAATCCGAGACCTCCAGGATG 1304
Query 1242 AAGGTTTTGATGTGCAAACTTCAGGATACGGTCTCATGGCTACATATCATGCAAAGAACG 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 AAGGTTTTGATGTGCAAACTTCAGGATACGGTCTCATGGCTACATATCATGCAAAGAACG 1364
Query 1302 AATACTGCCTTCTTACAGACATGTGCCAAGGCTTTGATGTCTTCGTTAGGATCATTTCTC 1361
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1365 AATACTGCCTTCTTACAGACATGTGCCAAGGCTTTGATGTCTTCATCAGGATCATTTCTC 1424
Query 1362 AACTTGAAGAACAAG-ACTAAAATGAGATAGAAGATCATAAAATAAAAGCTTCACATAGC 1420
|||||||| |||| | |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1425 AACTTGAA---CAAGTA-TAAAATCAGATGGAAGATCATAAAATAAAAGCTTCACATAGC 1480
Query 1421 TACTCTCTCATTAACTTAATGGTTCTATACATTTACTTTGCTTCTATCTATTTGTACAAG 1480
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TACTCTCTTATTAACTAAATGGTTCTATACATTTACTTTGCTTCTATCTATTTGTACAAG 1540
Query 1481 TCAATGGTGGCTCAATACATAAGACACTTTACAAAATTT 1519
|||||||||||||||||| | ||||||||||||||||||
Sbjct 1541 TCAATGGTGGCTCAATACTTCAGACACTTTACAAAATTT 1579
> AT4G17840.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT2G35260.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr4:9918052-9920475 REVERSE LENGTH=1724
Length=1724
Score = 305 bits (165), Expect = 7e-82
Identities = 182/190 (96%), Gaps = 1/190 (1%)
Strand=Plus/Minus
Query 1386 AGATAGAAGATCATAAAATAAAAGCTTCACATAGCTACTCTCTCATTAACTTAATGGTTC 1445
|||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1722 AGATGGAAGATCATAAAATAAAAGCTTCACATAGCTACTCTCTTATTAACTAAATGGTTC 1663
Query 1446 TATACATTTACTTTGCTTCTATCTATTTGTACAAGTCAATGGTGGCTCAATACATAAGAC 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1662 TATACATTTACTTTGCTTCTATCTATTTGTACAAGTCAATGGTGGCTCAATACTTCAGAC 1603
Query 1506 ACTTTACAAAATTTAAAACAAAGGATAATGTTT-ATTCAGTTATTTATCTATCTTGAGTT 1564
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1602 ACTTTACAAAATTTAAAACAAAGGATAATGTTTTATACAGTTATTTATCTATCTTGAGTT 1543
Query 1565 GTCGTCACCT 1574
|| |||||||
Sbjct 1542 GTTGTCACCT 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77710443660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5