BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493092
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17810.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 1225 0.0
> AT4G17810.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr4:9906848-9907657 FORWARD LENGTH=810
Length=810
Score = 1225 bits (663), Expect = 0.0
Identities = 772/822 (94%), Gaps = 17/822 (2%)
Strand=Plus/Plus
Query 1 CCCATCTTCTTCTTATTCTTCATCTTCTACTGAGATTTCTC--TTACAATC-aaaaaaaC 57
||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 1 CCCATCTTCTTCTTATTCTTCATCTTCTACTGAGATTTCTCTTTTTTTTTCAAAAAAAAC 60
Query 58 TTCATCCTTGAATGAACGGTGGTGCATGAATGTGGAACCCTAACAAAATTGAAGAATTGG 117
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 -TCATCCTTGAATGAACGGTGGTGCATGGATGTGGAACCCTAACAAAATTGAAGAATTGG 119
Query 118 AGGATGATGATGAATCTTGGGAAGTCAAAGCCTTTGAGCAAGACACTAAAGGCAACATCT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGGATGATGATGAATCTTGGGAAGTCAAAGCCTTTGAGCAAGACACTAAAGGCAACATCT 179
Query 178 CTGGTACCACTTGGCCTCCAAGATCTTACACTTGCAATTTCTGCCGCCGTGAGTTCCGTT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTGGTACCACTTGGCCTCCAAGATCTTACACTTGCAATTTCTGCCGCCGTGAGTTCCGTT 239
Query 238 CTGCTCAGGCCCTAGGCGGCCACATGAATGTTCACCGCCGTGACCGCGCTTCATCTAGGG 297
||||||| ||| ||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 240 CTGCTCAAGCCTTAGGCGGTCACATGAATGTCCACCGCCGTGACCGCGCCTCATCTAGGG 299
Query 298 CTCATCAAGGTTCCACCGTTGCGGCTGCGGCTAGAAGCGGCCACGGCGGGACGTTACTCA 357
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 300 CTCATCAAGGTTCCACCGTTGCGGCTGCGGCTAGAAGCGGCCACGGGGGGATGTTACTCA 359
Query 358 ATTCTTGTGCTCCACCGTTGCCTACAACGACACTTATAATCCAATCCACAACGAGTAACA 417
||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 360 ATTCTTGTGCTCCGCCGTTGCCTACAACGACACTTATAATACAATCCACGGCGAGTAACA 419
Query 418 TTGAAGGTTTATCCCATTTCTACCAA-TCGCAAAACCCTAGTGGCATTTTTGGTAATTCC 476
|||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 420 TTGAAGGTTTGTCCCATTTCTACCAACT-GCAAAACCCTAGTGGCATTTTTGGTAATTCT 478
Query 477 GGTGATATAGTGAATCGTTATGGCACGACTTCGTTTCCTTCGAGCAACCTTCCGTTTTCA 536
||||| || ||||||| |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 479 GGTGACATGGTGAATCTTTATGGTACGACTTCGTTTCCTCCGAGCAACCTTCCGTTTTCA 538
Query 537 GTCTTGAATTCTCCAGTAGAAGCTCCTCCTCGGCTTATAGAATATTCGACAGGAGATGAT 596
| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 539 ATGTTGAATTCTCCAGTAGAAGTTCCTCCTCGGCTTATTGAATATTCGACAGGAGATGAT 598
Query 597 GAGAGCATTGGCTCGATGAAAGA-GACGACAGGAACATCAGTGGATGAGCTTGATCTTGA 655
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 599 GAGAGCATTGGCTCGATGAAAGAAG-CGACAGGAACATCAGTGGATGAGCTTGATCTTGA 657
Query 656 ACTTCGACTAGGGCACAATCCACCATGACATTTCCTTTTCATGACCCACTCGAAGTCTCG 715
|||||| ||||||||| ||||||| ||||||||| |||||||||||||||||| | |
Sbjct 658 ACTTCGGCTAGGGCACCATCCACCGTGACATTTCATTTTCATGACCCACTCGA-G----G 712
Query 716 AAGCTTTCACATTAATATCCATTTCATACACAGGTTCTTTAAATCGTAATTTACATGTTG 775
|||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 713 ---CTTTCACATTAATATCTATT-CATACACAGGTTCTTTAAATCTTAATTTACATGTTG 768
Query 776 TTGTTAAATTCTGAATTCAATTTGGCTTGAATTGTGTATCAC 817
||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TTGTTAAATTCTGAATTCAATTTGGCTTGAATTGTGTATCAC 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39785444424
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5