BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493093
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17800.1 | Symbols: | Predicted AT-hook DNA-binding family ... 2163 0.0
AT2G35270.1 | Symbols: GIK | Predicted AT-hook DNA-binding fami... 342 4e-93
AT1G20900.1 | Symbols: ESC, ORE7, AHL27 | Predicted AT-hook DNA... 102 8e-21
> AT4G17800.1 | Symbols: | Predicted AT-hook DNA-binding family
protein | chr4:9895290-9896668 REVERSE LENGTH=1379
Length=1379
Score = 2163 bits (1171), Expect = 0.0
Identities = 1310/1371 (96%), Gaps = 33/1371 (2%)
Strand=Plus/Plus
Query 1 CTCACCTTCTCCTTCTACTTTTTATCATTTCCCTTTCTCTTCCCATTTTAGTCTTCCTAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCACCTTCTCCTTCTACTTTTTATCATTTCCCTTTCTCTTCCCATTTTAGTCTTCCTAT 60
Query 61 AACTTCTTCTCAATCCTCTCTCATATCTTTTTTCTTAGTTTAAATTTCAATAAAATAGAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 AACTTCTTCTCAATCCTCTCTCATATCTTTTTTCTTAGTTTAAATTTCAATAAAAT---A 117
Query 121 GaaaaaaaaaCATATACAAATCTACAGAGAAGAGAAGCtttattttaatc-----t-tgt 174
| ||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 118 G--AAAAAAACATATACAAATCTACAGAGAAGAGAAGCTTTATTTTAATCTTGTGTGTGT 175
Query 175 -tgtgtgttttatataatttttattttttttCAAATTAAAATCTCTTCTTTGCTTTTGAT 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GTGTGTGTTTTATATAATTTTTATTTTTTTTCAAATTAAAATCTCTTCTTTGCTTTTGAT 235
Query 234 GTGGGTATGGCTGGTCTTGATCTAGGCACAGCTTTTCGTTACGTTAATCATCAGCTCCAT 293
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 236 GTGGGCATGGCTGGTCTTGATCTAGGCACAGCTTTTCGTTACGTTAATCACCAGCTCCAT 295
Query 294 CGTCCCGATCTCCACCTTCACCACAATTCTTCTTCCGATGACGTCACTCCCGGAGCTGGG 353
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 296 CGTCCCGATCTCCACCTTCACCACAATTCCTCCTCCGATGACGTCACTCCCGGAGCCGGG 355
Query 354 ATGGGTCATTTCACCGTCGACGACGAAGacaacaacaacaacaacaacCATCAAGGTCTT 413
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 356 ATGGGTCATTTCACCGTCGACGACGAAG------ACAACAACAACAACCATCAAGGTCTT 409
Query 414 GACTTAGCCTCTGGTGGAGGATCAGGAAGCTCTGGAGGAGGAGGAGGTCACGGCGGCGGA 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 410 GACTTAGCCTCTGGTGGAGGATCAGGAAGCTCTGGAGGAGGAGGAGGTCACGGCGGGGGA 469
Query 474 GGAGACGTCGTTGGTCGTCGTCCACGTGGCAGACCACCGGGATCGAAGAACAAACCGAAA 533
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 470 GGAGACGTCGTTGGTCGTCGTCCACGTGGCAGACCACCGGGATCCAAGAACAAACCGAAA 529
Query 534 CCTCCGGTGATTATCACGCGCGAGAGCGCAAACACTCTTAGAGCTCACATTCTTGAAGTA 593
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 530 CCTCCGGTAATTATCACGCGCGAGAGCGCAAACACTCTAAGAGCTCACATTCTTGAAGTA 589
Query 594 ACAAACGGCTGCGACGTTTTCGACTGCGTTGCGACTTATGCTCGTCGGAGGCAGCGAGGG 653
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 590 ACAAACGGCTGCGATGTTTTCGACTGCGTTGCGACTTATGCTCGTCGGAGACAGCGAGGG 649
Query 654 ATCTGCGTTCTGAGCGGTAGCGGGACGGTCACGAACGTCAGCATACGTCAGCCATCTGCG 713
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 650 ATCTGCGTTCTGAGCGGTAGCGGAACGGTCACGAACGTCAGCATACGTCAGCCATCTGCG 709
Query 714 GCTGGAGCGGTTGTGACGCTACAAGGAACGTTCGAGATTCTTTCTCTCTCCGGGTCGTTT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 710 GCTGGAGCGGTTGTGACGCTACAAGGAACGTTCGAGATTCTTTCTCTCTCCGGATCGTTT 769
Query 774 CTTCCTCCTCCGGCTCCTCCCGGAGCAACTAGTTTGACAATTTTCTTAGCCGGAGGACAA 833
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 770 CTTCCTCCTCCGGCACCTCCCGGAGCAACGAGTTTGACAATTTTCTTAGCCGGAGGACAA 829
Query 834 GGTCAGGTGGTCGGAGGAAGCGTTGTGGGTGAGCTTACGGCGGCTGGACCGGTGATTGTA 893
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 GGTCAGGTGGTTGGAGGAAGCGTTGTGGGTGAGCTTACGGCGGCTGGACCGGTGATTGTG 889
Query 894 ATTGCAGCTTCGTTTACTAATGTTGCTTATGAGAGACTTCCTCTAGAAGAAGATGAGCAG 953
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 890 ATTGCAGCTTCGTTTACTAATGTTGCTTATGAGAGACTTCCTTTAGAAGAAGATGAGCAG 949
Query 954 CAGCAACAGCTGGGAGGGGGATCTAACGGCGGAGGTAATTTGTTTCCGGAGGTTGCTGCT 1013
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 950 CAGCAACAGCTTGGAGGAGGATCTAACGGCGGAGGTAATTTGTTTCCGGAGGTGGCAGCT 1009
Query 1014 GGAGGAGGAGGAGGACTTCCGTTCTTTAATCTACCGATGAATATGCAACCAAATGTGCAA 1073
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1010 GGAGGAGGAGGAGGACTTCCGTTCTTTAATTTACCGATGAATATGCAACCAAATGTGCAA 1069
Query 1074 CTTCCGGTGGAAGGTTGGCCGGGGAATTCCAGTGGAAGAGGTCCTTTCTGATGTGTATAT 1133
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1070 CTTCCGGTGGAAGGTTGGCCGGGGAATTCCGGTGGAAGAGGTCCTTTCTGATGTGTATAT 1129
Query 1134 ATTGATAATCATTATATATATACCGGCGGAGGAGCTTTTCCGGCGAAGA-TTTGCGAGAG 1192
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1130 ATTGATAATCATTATATATATACCGGCGGAGAAGCTTTTCCGGCGAAGAATTTGCGAGAG 1189
Query 1193 TGAAGAAAGGTTAGAAAAGCTTTTTATGGACTAATGAATTTCAAATTATCATCGTGATTT 1252
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1190 TGAAGAAAGGTTAGAAAAGCTTTTAATGGACTAATGAATTTCAAATTATCATCGTGATTT 1249
Query 1253 CGGACATTGTCTTGTTCATCATGTTAAGCTTAGgtttttctctgtctttttgtttttgcg 1312
||||||||||||||||||||||||||||||||||||| | | | | || || ||
Sbjct 1250 CGGACATTGTCTTGTTCATCATGTTAAGCTTAGGTTTAT-T-T-T-TT---GT-----CG 1297
Query 1313 ttttgtagaattttatgttt-aatcctttttattttCTGTGAAACTCTATT 1362
||| |||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1298 TTT-GTAGAATTTTATGTTTGAATCCTTTTTTTTTTCTGTGAAACTCTATT 1347
> AT2G35270.1 | Symbols: GIK | Predicted AT-hook DNA-binding family
protein | chr2:14857021-14857878 FORWARD LENGTH=858
Length=858
Score = 342 bits (185), Expect = 4e-93
Identities = 357/440 (81%), Gaps = 12/440 (3%)
Strand=Plus/Plus
Query 489 CGTCGTCCACGTGGCAGACCACCGGGATCGAAGAACAAACCGAAACCTCCGGTGATTATC 548
||||| ||||||||| | ||| | |||||||||||||||||||| || ||||||||| ||
Sbjct 232 CGTCGGCCACGTGGCCGTCCAGCTGGATCGAAGAACAAACCGAAGCCGCCGGTGATTGTC 291
Query 549 ACGCGCGAGAGCGCAAACACTCTTAGAGCTCACATTCTTGAAGTAACAAACGGCTGCGAC 608
|||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 292 ACGCGCGAGAGCGCAAACACTCTTAGGGCTCACATTCTTGAAGTTGGAAGTGGCTGCGAC 351
Query 609 GTTTTCGACTGCGT-TGCGACTTATGCTCGTCGGAGGCAGCGAGGGATCTGCGTTCTGAG 667
|||||||| || | | | ||||| ||||||||||| ||||| ||||| |||||| | |
Sbjct 352 GTTTTCGAATGTATCTCC-ACTTACGCTCGTCGGAGACAGCGCGGGATTTGCGTTTT-AT 409
Query 668 C-GGTAGCGGGA-CGGTCACGAACGTCAGCATACGTCAGCC-ATCTGCGGCTGGAGCGGT 724
| || | ||||| | ||||| ||||||||||| |||||||| | | ||||| ||||| ||
Sbjct 410 CCGGGA-CGGGAACCGTCACTAACGTCAGCATCCGTCAGCCTA-CGGCGGCCGGAGCTGT 467
Query 725 TGTGACGCTACAAGGAACGTTCGAGATTCTTTCTCTCTCCGGGTCGTTTCTTCCTCCTCC 784
|||||| || | || || || ||||||||||| |||||||| || |||||||| || ||
Sbjct 468 TGTGACTCTGCGGGGTACTTTTGAGATTCTTTCCCTCTCCGGATCTTTTCTTCCGCCACC 527
Query 785 GGCTCCTCCCGGAGCAACTAGTTTGACAATTTTCTTAGCCGGAGGACAAGGTCAGGTGGT 844
|||||||| || || ||||| ||||| || ||| | || |||| ||||| ||||| ||
Sbjct 528 TGCTCCTCCAGGGGCGACTAGCTTGACGATATTCCTCGCTGGAGCTCAAGGACAGGTCGT 587
Query 845 CGGAGG-AAGCGTTGTGGGTGAGCTTAC-GGCGGCTGGACCGGTGATTGTAATTGCAGCT 902
|||||| || ||| || |||||| ||| |||||| || ||||| || || || |||||
Sbjct 588 CGGAGGTAA-CGTAGTTGGTGAG-TTAATGGCGGCGGGGCCGGTAATGGTCATGGCAGCG 645
Query 903 TCGTTTACTAATGTTGCTTA 922
|| ||||| || || |||||
Sbjct 646 TCTTTTACAAACGTGGCTTA 665
> AT1G20900.1 | Symbols: ESC, ORE7, AHL27 | Predicted AT-hook DNA-binding
family protein | chr1:7272556-7274072 FORWARD LENGTH=1517
Length=1517
Score = 102 bits (55), Expect = 8e-21
Identities = 113/141 (80%), Gaps = 4/141 (3%)
Strand=Plus/Plus
Query 723 GTTGTGACGCTACAAGGAACGTTCGAGATTCTTTCTCTCTCCGGGTC-GTTTCTTCCTCC 781
|||||||| |||| |||| ||| ||||||||||| || | ||| | |||| | || ||
Sbjct 985 GTTGTGACTTTACATGGAAGGTTTGAGATTCTTTCGCTAACGGGGACTGTTT-TGCCACC 1043
Query 782 TCCGGCTCCTCCCGGAGCAACTAGTTTGACAAT-TTTCTTAGCCGGAGGACAAGGTCAGG 840
||| || || || || || | ||||| | || ||| ||||||||||| ||||||||||
Sbjct 1044 TCCTGCACCGCCTGGTGCCGGTGGTTTGTCTATATTT-TTAGCCGGAGGGCAAGGTCAGG 1102
Query 841 TGGTCGGAGGAAGCGTTGTGG 861
|||||||||||||||||||||
Sbjct 1103 TGGTCGGAGGAAGCGTTGTGG 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67067928120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5