BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493095
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17785.1 | Symbols: MYB39 | myb domain protein 39 | chr4:988... 1838 0.0
> AT4G17785.1 | Symbols: MYB39 | myb domain protein 39 | chr4:9881635-9883432
REVERSE LENGTH=1379
Length=1379
Score = 1838 bits (995), Expect = 0.0
Identities = 1136/1204 (94%), Gaps = 9/1204 (1%)
Strand=Plus/Plus
Query 1 GAAGATCATATCTTCAAAAACCTTTGATAAGTTAGGGTTCTTGATATAAACAAAATGGGA 60
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 11 GAAGATCATATCTTCAAAAACCTCTGATAAGTTTTGGTTCTTGATATAAACAAAATGGGA 70
Query 61 AGATCACCGTGTTGCGATCAAGACAAAGGCGTGAAGAAAGGACCGTGGCTGCAAGAAGAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 71 AGATCACCGTGTTGCGATCAAGACAAAGGCGTGAAGAAAGGACCGTGGCTGCCAGAAGAA 130
Query 121 GATGATAAGCTCACTGCTTATATAAACGAGAACGGTTATGGGAATTGGCGTTCGCTTCCT 180
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 131 GATGATAAGCTCACTGCTTATATAAACGAGAATGGTTATGGGAATTGGCGGTCGCTTCCT 190
Query 181 AAGCTCGCTGGACTTAACCGCTGTGGCAAGAGCTGTCGCCTCCGGTGGATGAATTATCTC 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 191 AAGCTCGCTGGACTTAACCGCTGTGGCAAGAGCTGTCGGCTCCGGTGGATGAATTATCTC 250
Query 241 CGTCCTGATATCCGGCGAGGCAAAATTTCCGATGAAGAAGAGAGTACTATCGTTAGACTC 300
|| |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 251 CGGCCTGATATCCGGAGAGGCAAATTTTCCGATGGAGAAGAGAGTACTATCGTTAGACTC 310
Query 301 CATGCCCTTCTTGGCAACAAATGGTCGAAAATTGCGTGTCATCTTCCAGGAAGAACCGAT 360
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 311 CATGCCCTCCTTGGCAACAAATGGTCGAAAATTGCGGGTCATCTTCCAGGAAGAACAGAT 370
Query 361 AATGAAATTAAAAACTATTGGAACACTCACATGAGGAAGAAGTTGTTGCAAATGGGGATT 420
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 371 AATGAAATTAAAAACTATTGGAACACTCATATGAGGAAGAAGTTATTGCAAATGGGGATT 430
Query 421 GATCCAATGACGCATGAGCCAAGAACCAACGATCTTAGTCCTATCCTCGATGTTTCTCAA 480
|||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 431 GATCCAGTGACGCACGAGCCAAGAACCAACGATCTTAGCCCTATCCTCGATGTTTCTCAA 490
Query 481 ATGCTAGCCGCGGCAATCAACAATGGCCAGTTTGGTAACAATAACCTCTTCAACAATAAC 540
||||| || || ||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 491 ATGCTCGCGGCAGCAATCAACAATGGCCAATTTGGTAACAATAACCTCCTCAACAATAAC 550
Query 541 ACTGCTTTGAAAGATCTTCTCAAACTCCAATTGATCCATAAAATGCTTCAAATCATAACC 600
|| |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 551 ACCGCTTTGGAAGATATTCTTAAACTCCAATTGATCCATAAAATGCTTCAAATCATAACC 610
Query 601 CCCAAAGCCATACCAAACATCAATAGCTTCAACG-CCAGTTCT-GTGAATCCTAAACCGG 658
|||||||||||||||||||||| ||||||||| | ||| || | ||||||||||||| |
Sbjct 611 CCCAAAGCCATACCAAACATCAGTAGCTTCAA-GACCAATT-TACTGAATCCTAAACCAG 668
Query 659 AACCGGTAGTCAATAGCTTCAATACCAATTCAGTGAATCCTAAACCGAATCCCCCGGTTG 718
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 669 AACCGGTAGTCAATAGCTTCAATACCAATTCAGTGAATCCTAAACCGGATCCCCCGGCTG 728
Query 719 GACTTTTCATAAACCAAAGTGGAATCGCTCCTGACGCCACCTCGGATTTCATTCCATCTT 778
| |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct 729 GTCTTTTCATAAACCAAAGTGGAATCACTCCTGAGGCCGCCTCGGATTTCATTCCATCTT 788
Query 779 ATGAAAATGTTTGGGATGGTTTTGAAGATAACCAGCTTCCTGGTTTGGTTACGGTTTCTC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 ATGAAAATGTTTGGGATGGTTTTGAAGATAACCAGCTTCCTGGTTTGGTTACGGTTTCTC 848
Query 839 AAGATAGTTTGAATACAGCAAAACCGGGTACCAGTACCACCACCGAGGTAAATGATCATA 898
|||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 849 AAGAGAGTTTAAATACAGCAAAACCGGGTACCAGTACGACCACCAAGGTAAATGATCATA 908
Query 899 CCAGAACCGGTATGATACCGGGTTACTATGGTGATCAATTACTAGAAATCCCATCTTCTG 958
||||||||||||||| ||| ||||||||||||||||| ||||||||| ||||||| |||
Sbjct 909 TCAGAACCGGTATGATGCCGTGTTACTATGGTGATCAACTACTAGAAACCCCATCTACTG 968
Query 959 GTTCGATATCGGTATCTCCTGAGACAACCAGTTTGAACCATCCCGGTACGGCTCAACAGT 1018
||||| ||||||| ||||| |||||||||||||||||||||||| |||| |||||||| |
Sbjct 969 GTTCGGTATCGGTCTCTCCCGAGACAACCAGTTTGAACCATCCCAGTACAGCTCAACACT 1028
Query 1019 CATCCGGTTCATCAGATCTCCTAGAGGACTGGGAGAAGTTCCTTGATGATGAAACAAGTG 1078
||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1029 CATCCGGTTCA---GATTTCCTAGAGGACTGGGAGAAGTTTCTTGATGATGAAACAAGTG 1085
Query 1079 ATTCTTGCTGGAAAAGTTTCTTAGACTTAACGTCGCCCACATCGTCACCCGTCCCATGGT 1138
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1086 ATTCTTGCTGGAAAAGTTTCTTAGACTTAACGTCACCCACATCGTCACCTGTCCCATGGT 1145
Query 1139 AGAACTGGATTTTGTTCGGGTCGTATACTCA--GTTTTAAAGAAAATACATACACAAAGA 1196
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1146 AGAACTGGATTTTGTTCGGGTCGTATACTCATAGTTTTAAAGACAATACATACACAAAGA 1205
Query 1197 TATT 1200
||||
Sbjct 1206 TATT 1209
Score = 115 bits (62), Expect = 1e-24
Identities = 79/86 (92%), Gaps = 5/86 (6%)
Strand=Plus/Plus
Query 1196 ATATTTTCTTGTAAAGGAA----TGTTTGT-ATTTGTTCTTATTTGGTTTGGTTGTTGTG 1250
||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 1261 ATATTTTCTTGTAAAGGAATTCTTATTTGTAATTTGTTCTTATTTGGTTTGGTTGTTGTG 1320
Query 1251 TAAAGAAACACATTGTAATCCCCATT 1276
|||||||||||||||||||| |||||
Sbjct 1321 TAAAGAAACACATTGTAATCACCATT 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63604090515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5