BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493100
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17750.1 | Symbols: HSF1, HSFA1A, ATHSF1, ATHSFA1A | heat sh... 2032 0.0
> AT4G17750.1 | Symbols: HSF1, HSFA1A, ATHSF1, ATHSFA1A | heat
shock factor 1 | chr4:9869818-9871603 REVERSE LENGTH=1639
Length=1639
Score = 2032 bits (1100), Expect = 0.0
Identities = 1276/1360 (94%), Gaps = 16/1360 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTCTCTATCCGTA-GAAAAATGGACGGTGTTACCGGCGGAGGAACGAATATCAGC 59
||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct 23 TCTCTTTCTTTATCCGTACG-AAAATGGACGGTGTTACCGGCGGAGGAACGAATATCGGC 81
Query 60 GAGGCTGTGACGGCGCCGCCACCGCGGAATCCGCATCCAGCGACGTTGCTTAGTGCGAAC 119
||||||||||||||||| |||||||||||||||||||||||||| || |||| |||||||
Sbjct 82 GAGGCTGTGACGGCGCCACCACCGCGGAATCCGCATCCAGCGACTTTACTTAATGCGAAC 141
Query 120 TCTTTACCTCCTCCTTTCCTTAGCAAGACGTATGACATGGTGGAAGATCCGGCGACGAAC 179
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 142 TCTTTACCGCCCCCTTTCCTTAGCAAGACGTATGACATGGTGGAAGATCCGGCGACGGAC 201
Query 180 GCGATTGTTTCATGGAGTCCGACGAACAATAGCTTTATTGTTTGGGATTCATCGGAGTTT 239
|||||||| |||||||||||||||||||||||||| |||||||||||| || ||||||||
Sbjct 202 GCGATTGTCTCATGGAGTCCGACGAACAATAGCTTCATTGTTTGGGATCCACCGGAGTTT 261
Query 240 TCTCGTGATCTTCTACCTAAATACTTCAAACACAACAATTTCTCCAGCTTTGTTCGTCAG 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 262 TCTCGTGATCTTCTACCTAAATACTTCAAACACAACAATTTCTCCAGCTTTGTTCGCCAG 321
Query 300 TTAAATACCTATGGTTTTAGGAAAGTTGATCCAGATCGGTGGGAATTTGCTAATGAAGGA 359
||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 322 TTAAACACCTATGGTTTTAGGAAAGTGGATCCAGATCGATGGGAATTTGCTAATGAAGGT 381
Query 360 TTCTTAAGAGGTCAAAAACATCTATTGAAGACGATAAGCCGGAGAAAATCTGCTCAGGGA 419
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 382 TTCTTAAGAGGTCAAAAACATCTATTGAAGAAGATAAGCCGGAGAAAATCTGTTCAGGGA 441
Query 420 CAT-G--GTAGTAGTAGTAATCCACAATCTCAGCAATTATCTCAGGGTCAAGGTTCAATG 476
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 CATGGTAGTAGTAGTAGTAATCCACAATCTCAGCAATTATCTCAGGGTCAAGGTTCAATG 501
Query 477 GCTGCATTATCTTCATGTGTTGAGGTTGGGAAATTTGGGTTAGAGGAAGAAGTTGAACAG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 GCTGCATTATCTTCATGTGTTGAGGTTGGGAAATTTGGGTTAGAGGAAGAAGTTGAACAG 561
Query 537 CTTAAAAGAGACAAAAACGTGTTGATGCAGGAACTCGTTAAGTTACGCCAGCAGCAACAA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 CTTAAAAGAGACAAAAACGTGTTGATGCAGGAACTCGTTAAGTTACGCCAGCAGCAACAA 621
Query 597 ACAACAGATAGTAAACTTCAGGTTATGGTTAAACATCTTCAGGCTATGGAGCAGAGGCAA 656
|||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 622 ACAACAGATAATAAACTTCAGGTTTTGGTTAAACATCTTCAGGTTATGGAGCAGAGGCAA 681
Query 657 CAACAGATCATGTCTTTTCTTGCTAAAGCTGTCCGGAATCCAACTTTCCTCTCTCAGTTT 716
|||||||| |||||||| |||||||||||||| | |||||| ||||||||||||||||||
Sbjct 682 CAACAGATTATGTCTTTCCTTGCTAAAGCTGTACAGAATCCTACTTTCCTCTCTCAGTTT 741
Query 717 ATACAGACGCAGACCGATAGTAATATGCATGTAACCGAGGCTAATAAGAAGCGGAGACTC 776
||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 742 ATACAGAAGCAGACTGATAGTAATATGCATGTAACCGAGGCCAATAAGAAGCGGAGACTC 801
Query 777 AGAGAGGATACTACCGATGCTGCTACTGCTGAG-AAT--T-ATAGCCGTAGCTCGGATGC 832
|||||||||| ||| ||||||||||| ||| ||| | |||||| ||||| ||| ||
Sbjct 802 AGAGAGGATAGTAC---TGCTGCTACTGA-GAGTAATAGTCATAGCCATAGCTTGGAAGC 857
Query 833 ATCAGATGGACAGATAGTTAAGTATCAGCCTCATAGAAACGATTCAGTGATGTGGAACAT 892
|||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 858 ATCAGATGGACAGATAGTTAAGTATCAGCCACTTAGAAACGATTCAATGATGTGGAACAT 917
Query 893 GATGAAAACAGATGATAAGTTTCCGTTTCTTGACGGGTTCTCATCTCCAAACCGGGTGTC 952
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 918 GATGAAAACAGATGATAAGTATCCGTTTCTTGACGGGTTCTCATCTCCAAACCAGGTATC 977
Query 953 AGGAGTCACTCTTCAAGAGGTACTGCCCACAACTTCAGGACAGTCACAGGCATATGCACC 1012
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
Sbjct 978 AGGAGTCACTCTTCAAGAGGTACTACCCATAACTTCAGGACAGTCACAGGCATATGCATC 1037
Query 1013 CATACCATCAGGACAGCCTTTATCATACTTACCCTCTACTTCAACTTCTCTCCCGGATAC 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 TGTACCATCAGGACAGCCTTTATCATACTTACCCTCTACTTCAACTTCTCTCCCGGATAC 1097
Query 1073 CGTAATGCCAGAGATTTCCCGGATGCCACAATTGACACGAGAGAGTATCAACGACTTCCC 1132
| |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1098 CATAATGCCAGAGACTTCCCAGATACCACAATTGACACGAGAGAGTATCAACGACTTCCC 1157
Query 1133 TACAGAAAACTACATGGATACCGAGACTAATGCTCCAGATACATTCATCTCTCCAAGCCC 1192
||||||||||| ||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct 1158 TACAGAAAACTTCATGGATACAGAGAAGAATGTTCCAGAGGCATTCATCTCTCCAAGCCC 1217
Query 1193 ATTCCTTGATGGTGGTTCAGTCCCAATTCAGCTTGACGGGA-TACCTGAAGACCCCGAGA 1251
|||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||
Sbjct 1218 ATTCCTTGATGGTGGTTCAGTCCCGATTCAGCTTGA-GGGAATACCCGAAGACCCCGAGA 1276
Query 1252 TTGATGAACTAATGAGTAACTTTGAATTCCTTGAAGAATATCCACCAGAAAGTCCAGTTC 1311
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1277 TTGATGAACTAATGAGTAACTTTGAATTCCTTGAAGAATATATGCCAGAAAGCCCAGTTT 1336
Query 1312 TTGGAGATGCAACTACAGTAGAGAACAGCAACAACA-CAA 1350
||||||||||||||||| ||||||||| |||||||| |||
Sbjct 1337 TTGGAGATGCAACTACACTAGAGAACAACAACAACAACAA 1376
Score = 135 bits (73), Expect = 9e-31
Identities = 164/204 (80%), Gaps = 21/204 (10%)
Strand=Plus/Plus
Query 1335 AACAGCAACAACACAAATGGTAGACATATGGATAAGTTTATAGAAGAGTTGGGTCTTCTC 1394
|||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1408 AACAACAACAACACAAATGGTAGACATATGGATAAGCTTATAGAAGAATTGGGTCTTCTC 1467
Query 1395 ACACCAGAGACAGAATAATCCTAAAGGATTATGAATTTATGTAAAGTATCAAACTGTAAA 1454
||| |||| |||||| | | |||||||||||| |||| ||| | || ||||||
Sbjct 1468 ACATCAGAAACAGAACACTAGTAAAGGATTATG--TTTA-GTA---TC-CAT--TGTAAA 1518
Query 1455 GTCTTTCTCTACTAACC--ATC-T-AG-ATCTCTTTTGTCaaaaaaaTTGCAACTTTGTG 1509
|||||||||||||||| ||| | || | ||| | || | |||||||||||||
Sbjct 1519 GTCTTTCTCTACTAACATTATCGTTAGGA-CTCAGTAGT-ACGG---TTGCAACTTTGTG 1573
Query 1510 ACAGAA-TCTTTCTTTGGATAATA 1532
||||| |||||| ||||||||||
Sbjct 1574 -CAGAAATCTTTCCTTGGATAATA 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5