BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493105
Length=1256
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1895 0.0
> AT4G17720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:9862446-9864663 REVERSE LENGTH=1321
Length=1321
Score = 1895 bits (1026), Expect = 0.0
Identities = 1188/1265 (94%), Gaps = 15/1265 (1%)
Strand=Plus/Plus
Query 1 tttttcttttctttttctctcttcttcacatcaaatccgcgaccagagatttttctctt- 59
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 11 TTTTTCTTTTATTTTTCACTCTTCTTCACATCAAATCCGCGACCAGAGATTTTTCT-TTC 69
Query 60 ctttga---tt--tttCGTTTCGTTTCAAAT-TTGTTCCTCC-G-GTGAAGaaaaaaaaa 111
|||||| || |||||||||||||||||| |||||||||| | |||||| ||||| |
Sbjct 70 CTTTGATTTTTCGTTTCGTTTCGTTTCAAATATTGTTCCTCCTGTGTGAAG-GAAAAACA 128
Query 112 aaCTTACGTTTCAATCCGCGCCAAAGCGACTTTCGTCATGTCGATGACAACTGTTAAAGT 171
| ||| | |||||||||||| ||| |||| |||| ||||| |||||||||| ||||||||
Sbjct 129 ATCTTCCATTTCAATCCGCGTCAACGCGATTTTCTTCATGACGATGACAACAGTTAAAGT 188
Query 172 GAGCAATGTCTCTCTTGGAGCAACCGAGAGAGATCTCAAGGAGTTCTTTTCCTTTTCTGG 231
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 189 GAGCAATGTTTCTCTAGGAGCAACCGATAGAGATCTCAAGGAGTTCTTTTCCTTTTCTGG 248
Query 232 CGATATTCTGTACCTTGAGACGCAGAGCGAGACTGAGCGGACTAAACTGGCATATGTTAC 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 249 CGATATTCTGTACCTTGAGACGCAGAGCGAGACTGAGCGGACTAAACTGGCATATGTCAC 308
Query 292 TTTCAAGGATCTGCAAGGAGCTGAAACTGCGGTTCTTCTCTCGGGAGCAACGATTGTTGA 351
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TTTTAAGGATCTACAAGGAGCTGAAACTGCGGTTCTTCTCTCGGGAGCAACGATTGTTGA 368
Query 352 TTCTTCGGTTATTGTCTCTATGGCCCCTGATTACCAACTATCGCCTGAGGCTTTAGCTTC 411
|||||| || |||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 369 TTCTTCAGTCATTGTCTCTATGGCTCCTGATTACCAACTGTCCCCTGAGGCTTTAGCTTC 428
Query 412 CTTAGAACCCAAAGAAAGCAACAAATCTCCCAGGGCAGGTGACTCCGTGTTGAGAAAAGC 471
||| |||||||| || ||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 429 CTTGGAACCCAAGGACAGCAATAAATCTCCCAAGGCAGGTGACTCCGTGTTGAGAAAAGC 488
Query 472 CGAAGATGTTGTGAGCAGCATGCTTGCAAAGGGCTTTATCCTGGGAAAAGATGCCATAGC 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 CGAAGATGTTGTGAGCAGCATGCTTGCAAAGGGCTTTATCCTGGGAAAAGATGCCATAGC 548
Query 532 CAAAGCCAAGAGTGTTGATGAGAAGCACCAGCTAACATCTACAGCATCAGCCAAAGTCGC 591
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 549 TAAAGCCAAAAGTGTTGACGAGAAGCACCAGCTAACATCTACAGCATCAGCCAAAGTCGC 608
Query 592 ATCTTTTGACAAGAAAATCGGTTTCACTGATAAGATCAACACAGGCACAGTCGTTGTGGG 651
|||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||
Sbjct 609 ATCTTTTGACAAGAAAATTGGTTTCACTGATAAGATCAACACAGGCACGGTGGTAGTGGG 668
Query 652 AGAAAAAGTCAGGGAAGTTGATCAGAAGTACCAAGTCTCAGAGAAAACCAAATCAGCAAT 711
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 AGAAAAGGTCAGGGAAGTTGATCAGAAGTACCAAGTCTCAGAGAAAACCAAATCAGCAAT 728
Query 712 CGCTGCAGCAGAGCAGACAGTGAGCAATGCAGGTTCAGCTATAATGAAGAACCGGTATGT 771
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 CGCTGCAGCGGAGCAGACAGTGAGCAATGCAGGTTCAGCTATAATGAAGAACCGGTATGT 788
Query 772 TCTCACAGGTGCCACGTGGGTCACTGGAGCCTTCAACAAAGTTGCTAAAGCTGCAGAAGA 831
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 789 TCTCACAGGTGCCACGTGGGTTACTGGAGCATTCAACAAAGTTGCTAAAGCTGCAGAAGA 848
Query 832 AGTCGGACAAAAGGCTAAAGAGAAAGTTGGTATGGCTGAGGAAGAGGATAAGAGGAAAGT 891
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 AGTTGGACAAAAGGCTAAAGAGAAAGTTGGTATGGCTGAGGAAGAGGATAAGAGGAAAGT 908
Query 892 GGTTGATGAGTTTGCTAGAGTTCACTTGTCTGAATCACCAAAGGCAGCTTCATCAACGCA 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 GGTTGATGAGTTTGCTAGAGTTCACTTGTCTGAATCACCAAAGGCAGCTTCATCAACGCA 968
Query 952 AGAAGCCGAACATGAATCAAAACTCTCTGAATCTCCTGAAGCAAAGAAAGAATCTGAACA 1011
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 969 AGAAGCCGAACGTGAATCAAAACTCTCTGAATCTCCTGAAGCAAAGAAAGATTCTGAACA 1028
Query 1012 TCTTGAACCACAACCGCAGCCGCTGCAGCAAAAATCTCCTCCACCTATGGCTCCGGCTCC 1071
|||||| |||||| || | || |||||||| |||||||||||||||||||| | |||||
Sbjct 1029 TCTTGAGCCACAATCGAAACCATTGCAGCAACAATCTCCTCCACCTATGGCTTCAGCTCC 1088
Query 1072 GGCTCCTGCTCAACCTTGAGATATGCTGACAAGTAAAGACCTTTCTGATTCTTGTTGTAA 1131
||||| ||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 1089 TGCTCCGGCTCAACCTTGAGATATGC--A-ATC-AAAGACCTTTCTGATTCTTGTTGTAA 1144
Query 1132 ACGGTAATACTTGGATCTAATCTCTCTCAGATTGTTGAAGATGAAGATTGAACTTGTTAT 1191
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 ACGGTAAAACTTGGAACTAATCTCTCTCAGATTGTTGAAGATGAAGATTGAACTTGTTAT 1204
Query 1192 TTAGGACGAAGACTTGTGGCCTTGTAACATTGGATTCAGGGTCGATTTGGTAATTAGACC 1251
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1205 TTAGGACGAAGACTTGTGTTCTTGTAACATTGGATTCATGGTCGATTTGGTAATTAGACC 1264
Query 1252 TGAAA 1256
| |||
Sbjct 1265 TTAAA 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61746670350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5