BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493105 Length=1256 Score E Sequences producing significant alignments: (Bits) Value AT4G17720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1895 0.0 > AT4G17720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:9862446-9864663 REVERSE LENGTH=1321 Length=1321 Score = 1895 bits (1026), Expect = 0.0 Identities = 1188/1265 (94%), Gaps = 15/1265 (1%) Strand=Plus/Plus Query 1 tttttcttttctttttctctcttcttcacatcaaatccgcgaccagagatttttctctt- 59 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 11 TTTTTCTTTTATTTTTCACTCTTCTTCACATCAAATCCGCGACCAGAGATTTTTCT-TTC 69 Query 60 ctttga---tt--tttCGTTTCGTTTCAAAT-TTGTTCCTCC-G-GTGAAGaaaaaaaaa 111 |||||| || |||||||||||||||||| |||||||||| | |||||| ||||| | Sbjct 70 CTTTGATTTTTCGTTTCGTTTCGTTTCAAATATTGTTCCTCCTGTGTGAAG-GAAAAACA 128 Query 112 aaCTTACGTTTCAATCCGCGCCAAAGCGACTTTCGTCATGTCGATGACAACTGTTAAAGT 171 | ||| | |||||||||||| ||| |||| |||| ||||| |||||||||| |||||||| Sbjct 129 ATCTTCCATTTCAATCCGCGTCAACGCGATTTTCTTCATGACGATGACAACAGTTAAAGT 188 Query 172 GAGCAATGTCTCTCTTGGAGCAACCGAGAGAGATCTCAAGGAGTTCTTTTCCTTTTCTGG 231 ||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 189 GAGCAATGTTTCTCTAGGAGCAACCGATAGAGATCTCAAGGAGTTCTTTTCCTTTTCTGG 248 Query 232 CGATATTCTGTACCTTGAGACGCAGAGCGAGACTGAGCGGACTAAACTGGCATATGTTAC 291 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 249 CGATATTCTGTACCTTGAGACGCAGAGCGAGACTGAGCGGACTAAACTGGCATATGTCAC 308 Query 292 TTTCAAGGATCTGCAAGGAGCTGAAACTGCGGTTCTTCTCTCGGGAGCAACGATTGTTGA 351 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309 TTTTAAGGATCTACAAGGAGCTGAAACTGCGGTTCTTCTCTCGGGAGCAACGATTGTTGA 368 Query 352 TTCTTCGGTTATTGTCTCTATGGCCCCTGATTACCAACTATCGCCTGAGGCTTTAGCTTC 411 |||||| || |||||||||||||| |||||||||||||| || ||||||||||||||||| Sbjct 369 TTCTTCAGTCATTGTCTCTATGGCTCCTGATTACCAACTGTCCCCTGAGGCTTTAGCTTC 428 Query 412 CTTAGAACCCAAAGAAAGCAACAAATCTCCCAGGGCAGGTGACTCCGTGTTGAGAAAAGC 471 ||| |||||||| || ||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 429 CTTGGAACCCAAGGACAGCAATAAATCTCCCAAGGCAGGTGACTCCGTGTTGAGAAAAGC 488 Query 472 CGAAGATGTTGTGAGCAGCATGCTTGCAAAGGGCTTTATCCTGGGAAAAGATGCCATAGC 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 CGAAGATGTTGTGAGCAGCATGCTTGCAAAGGGCTTTATCCTGGGAAAAGATGCCATAGC 548 Query 532 CAAAGCCAAGAGTGTTGATGAGAAGCACCAGCTAACATCTACAGCATCAGCCAAAGTCGC 591 |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 549 TAAAGCCAAAAGTGTTGACGAGAAGCACCAGCTAACATCTACAGCATCAGCCAAAGTCGC 608 Query 592 ATCTTTTGACAAGAAAATCGGTTTCACTGATAAGATCAACACAGGCACAGTCGTTGTGGG 651 |||||||||||||||||| ||||||||||||||||||||||||||||| || || ||||| Sbjct 609 ATCTTTTGACAAGAAAATTGGTTTCACTGATAAGATCAACACAGGCACGGTGGTAGTGGG 668 Query 652 AGAAAAAGTCAGGGAAGTTGATCAGAAGTACCAAGTCTCAGAGAAAACCAAATCAGCAAT 711 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 669 AGAAAAGGTCAGGGAAGTTGATCAGAAGTACCAAGTCTCAGAGAAAACCAAATCAGCAAT 728 Query 712 CGCTGCAGCAGAGCAGACAGTGAGCAATGCAGGTTCAGCTATAATGAAGAACCGGTATGT 771 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 729 CGCTGCAGCGGAGCAGACAGTGAGCAATGCAGGTTCAGCTATAATGAAGAACCGGTATGT 788 Query 772 TCTCACAGGTGCCACGTGGGTCACTGGAGCCTTCAACAAAGTTGCTAAAGCTGCAGAAGA 831 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 789 TCTCACAGGTGCCACGTGGGTTACTGGAGCATTCAACAAAGTTGCTAAAGCTGCAGAAGA 848 Query 832 AGTCGGACAAAAGGCTAAAGAGAAAGTTGGTATGGCTGAGGAAGAGGATAAGAGGAAAGT 891 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 849 AGTTGGACAAAAGGCTAAAGAGAAAGTTGGTATGGCTGAGGAAGAGGATAAGAGGAAAGT 908 Query 892 GGTTGATGAGTTTGCTAGAGTTCACTTGTCTGAATCACCAAAGGCAGCTTCATCAACGCA 951 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 909 GGTTGATGAGTTTGCTAGAGTTCACTTGTCTGAATCACCAAAGGCAGCTTCATCAACGCA 968 Query 952 AGAAGCCGAACATGAATCAAAACTCTCTGAATCTCCTGAAGCAAAGAAAGAATCTGAACA 1011 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 969 AGAAGCCGAACGTGAATCAAAACTCTCTGAATCTCCTGAAGCAAAGAAAGATTCTGAACA 1028 Query 1012 TCTTGAACCACAACCGCAGCCGCTGCAGCAAAAATCTCCTCCACCTATGGCTCCGGCTCC 1071 |||||| |||||| || | || |||||||| |||||||||||||||||||| | ||||| Sbjct 1029 TCTTGAGCCACAATCGAAACCATTGCAGCAACAATCTCCTCCACCTATGGCTTCAGCTCC 1088 Query 1072 GGCTCCTGCTCAACCTTGAGATATGCTGACAAGTAAAGACCTTTCTGATTCTTGTTGTAA 1131 ||||| ||||||||||||||||||| | | |||||||||||||||||||||||||| Sbjct 1089 TGCTCCGGCTCAACCTTGAGATATGC--A-ATC-AAAGACCTTTCTGATTCTTGTTGTAA 1144 Query 1132 ACGGTAATACTTGGATCTAATCTCTCTCAGATTGTTGAAGATGAAGATTGAACTTGTTAT 1191 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1145 ACGGTAAAACTTGGAACTAATCTCTCTCAGATTGTTGAAGATGAAGATTGAACTTGTTAT 1204 Query 1192 TTAGGACGAAGACTTGTGGCCTTGTAACATTGGATTCAGGGTCGATTTGGTAATTAGACC 1251 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 1205 TTAGGACGAAGACTTGTGTTCTTGTAACATTGGATTCATGGTCGATTTGGTAATTAGACC 1264 Query 1252 TGAAA 1256 | ||| Sbjct 1265 TTAAA 1269 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61746670350 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5