BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493108
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17695.1 | Symbols: KAN3 | Homeodomain-like superfamily prot... 1552 0.0
> AT4G17695.1 | Symbols: KAN3 | Homeodomain-like superfamily protein
| chr4:9848032-9850704 REVERSE LENGTH=1077
Length=1077
Score = 1552 bits (840), Expect = 0.0
Identities = 954/1008 (95%), Gaps = 11/1008 (1%)
Strand=Plus/Plus
Query 1 CTTGTTATGGAGCTTTTCCCTTCACAACCTGACTTGTACTTaaagatcagccaaagaaga 60
||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1 CTTCTTATGGAGCTTTTCCCTTCACAACCTGACTTGTACTTGAAGATCAGCCGAAGAAGA 60
Query 61 gaagaagaacaagaaaaagaaaatcaagaactacaagaacaagaagtcgaaagGAGATTA 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGAAGAACAAGAAAAAGAAAGTCAAGAACTACAAGAACAAGAAGTCGAAAGGAGATTA 120
Query 121 GGGTTTCAGAGTAAAGCCTCAGATTCGGATAGA-AAGTCTTCTGATAATCTCATCCACAC 179
||||||||||||||||||||||||| || | | |||||||| ||||||||||||||||
Sbjct 121 GGGTTTCAGAGTAAAGCCTCAGATTTAGACA-ACAAGTCTTCAAATAATCTCATCCACAC 179
Query 180 TCACCAATTCACTTCAAACAATGAAGCCACCAAGATTAATAATAATCAAGAACACAAGGA 239
|| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 180 TCTCCAGTTCACTTCAAACAATGAAGCCACCAAGATTAATAGTAATCAAGAACACAAGGA 239
Query 240 ATCTCTCGATCAAGACTTGAGATCTATGTTGATGATGAGACCAATAAGAGGAATCCCTCT 299
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 240 ATCTCTCGATCAAGACTTGAGATCTATTTTTATGATGAGACCAATAAGAGGAATCCCTCT 299
Query 300 TTACCAGAATCAAGTCCTTGACCACTACTACTACTCATCTTCCTCTCCCACTCCTTTCTT 359
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 300 TTACCAGAATCAAGTCCTTGACCACTACTACTACTCATCTACCTCTCCCAATCCTTTCTT 359
Query 360 CTTCAGTGAAGTCAACGGTCAACACGCTAGTAGTCGTTTAATCACAAACCCTAATTGTAG 419
|||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct 360 CTTCAGTGAAGTCAACGGTCAACATGCTAGTCGTCGCTTAATCACAAACCCTAATTGTAG 419
Query 420 TTTTAATTTTCACCACCGTCATCGGCGTCAAGCTCAACCGCAGCCGCCTAGATTCACGGC 479
||||||| | ||| |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 420 TTTTAATCTCCACAACCGTCATCGGCGTCAAGCTCAACCGCAGCCGCCAAGATTCACCGC 479
Query 480 CAAACGAGGAGTAAGGGCTCCAAGGATGCGGTGGACGACGACCCTCCACGCCCATTTTGT 539
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAAAAGAGGAGTAAGGGCTCCAAGGATGCGGTGGACGACGACCCTCCACGCCCATTTTGT 539
Query 540 ACACGCTGTTCAATTATTGGGTGGTCATGAAAGAGCAACCCCAAAATCAGTACTTGAGCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACACGCTGTTCAATTATTGGGTGGTCATGAAAGAGCAACCCCAAAATCAGTACTTGAGCT 599
Query 600 GATGGATGTGCAAGATCTCACATTGGCTCATGTTAAATCCCATCTACAGATGTATCGGAC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 GATGGATGTGCAAGATCTCACATTGGCTCATGTTAAATCCCATCTACAGATGTATCGAAC 659
Query 660 CATCAAGTCTACTGAAAAACCTACAACGTCATCAGGGCATTCAGACACTTGTGAGAATGG 719
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 660 CATCAAGTCTACTGAAAAACCTACAACGTCATCAGGGCAGTCAGA---TTGTGAGAATGG 716
Query 720 ATCACAGGTTAACAGTGAGAGAGAATCAAGAAATCTCCAAGG-TCTATGGAACAACTCAT 778
|||||| || ||||||||||||||| ||||||||||| | || ||||||||| ||||| |
Sbjct 717 ATCACAAGTAAACAGTGAGAGAGAAGCAAGAAATCTC-ACGGGTCTATGGAATAACTCCT 775
Query 779 CAAGTGAAGCTCGGTTCCATTTAAAGGCAAAGGCATCATCAGCTGTAGACATTTCATCCA 838
||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 776 CAAGTGAAGCTCGGTTCCAGTTGAAGGCAAAGGCATCATCAGGTGTAGACATTTCATCCA 835
Query 839 ATGAGAATGAATGGAAGAATCAAAGATGTCCAAGCAACGAACGATTGTCATCGGATTCGT 898
||||||||||||||||||||| ||||||||||||||||||||| ||||| || |||||||
Sbjct 836 ATGAGAATGAATGGAAGAATCGAAGATGTCCAAGCAACGAACGGTTGTCGTCAGATTCGT 895
Query 899 CAAGCCTCACAGGGACAAGACCAGAGACTGAAACTCCCAAT-TTGGATTTCACTTTAGCT 957
||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 896 CAAGCCTTACAGGGACAAGACCAGAGACTGAAACTCCCAATCTTG-ATTTCACTTTAGCT 954
Query 958 ACACCAAACCTCTCTCCCTAAATTTCTTATATATA--AAAAATATATA 1003
||||||||||||||||||||| ||||||||||||| ||||||| |||
Sbjct 955 ACACCAAACCTCTCTCCCTAATTTTCTTATATATACTAAAAATACATA 1002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5