BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493112
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17650.1 | Symbols: | Polyketide cyclase / dehydrase and li... 1567 0.0
> AT4G17650.1 | Symbols: | Polyketide cyclase / dehydrase and
lipid transport protein | chr4:9827515-9829659 FORWARD LENGTH=1221
Length=1221
Score = 1567 bits (848), Expect = 0.0
Identities = 1007/1081 (93%), Gaps = 21/1081 (2%)
Strand=Plus/Plus
Query 33 CTCTATTC--GTGATTAGCAACCCTAAAACTAAAATCGCCGAGAGAATTTTCTCCGTTTG 90
|||||||| ||||||||| |||||||||||||||||| ||||||| ||||||| |
Sbjct 143 CTCTATTCTTTTGATTAGCATCCCTAAAACTAAAATCGCAGAGAGAA-TTTCTCC----G 197
Query 91 TTATTGGATCTCTACCAAATT-GGGCGTTGGTTTTGGAATAATGCCACCGTTTATGTCTG 149
| |||||||||||||||||| ||||| | ||| |||||||||||||||||||||||||
Sbjct 198 -T-TTGGATCTCTACCAAATTGGGGCGCT--TTTGGGAATAATGCCACCGTTTATGTCTG 253
Query 150 GCCTGAGAGCTGTATCTTCCTTAGTTTCATGTCGAAACGCGATTAGCAGGAACCTGGTTA 209
| || |||||||||||||||||| |||||||||||||||||||||||||||| || ||||
Sbjct 254 GTCTCAGAGCTGTATCTTCCTTACTTTCATGTCGAAACGCGATTAGCAGGAAACTCGTTA 313
Query 210 GTCGTTCGGGGATCCCTCGAGGGAGTTTTGTATCCGATCAAATTAGGAGATTTGGTTCTC 269
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 314 GTCGTTCTGGGATCCCTCGAGGGAGTTTTGTATCAGATCAAATTAGGAGATTTGGTTCTC 373
Query 270 TTTCCGGCGTCGAGAGATGTTCTTCTAATTGGCTGATGTCCAATGATGACGCTAGAGTCT 329
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 374 TTTCCGGCGTCGAGAGATGTTCTTCTAATTGGTTGATGTCCAATGATGACGCTAGAGTCT 433
Query 330 CATTCGGGAGATTGCCCGGCTCTGTGAGCTTACTTCAGAGACGGCATTTTCTGGGTTGTG 389
| ||| |||||||||| |||||||||||| ||||||||||||||||||||||||| || |
Sbjct 434 CTTTCCGGAGATTGCCTGGCTCTGTGAGCCTACTTCAGAGACGGCATTTTCTGGGGTGCG 493
Query 390 GAGATGGGGAAGAAGGTGGTGGTGAGTTATCAAAGATCTACGAAGAGAGACGTGTTTTAG 449
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 494 GAGATGGGGAAGAAGGTGGTGGTGAGTTATCAAAGATCTATGAAGAGAGACGTGTCTTAG 553
Query 450 GGTATTCTCCGGAGCAATTGTTTAACGTAGTTGCAGCTGTAGACTTGTACCACGGATTTG 509
||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 554 GGTATACTCCGGAGCAAATGTTTAACGTAGTTGCAGCTGTAGACTTGTACCATGGATTTG 613
Query 510 TTCCTTGGTGTCAACGCTCCGAGGTTCTTAAAGAATACCCAGATGGCTCATTTGATGCTG 569
||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 614 TTCCTTGGTGTCAGCGCTCTGAGGTTCTTAAAGAATACCCTGATGGGTCATTTGATGCTG 673
Query 570 AATTGGAGATTGGTTTCAAGTTTCTTGTTGAGAGTTACATTTCCCATGTCGAATCCGAAA 629
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 674 AATTGGAGATTGGTTTCAAGTTTCTTGTTGAGAGTTACATTTCCCATGTCGAATCCGAGA 733
Query 630 GGCCGAAATGGATTAAGACAACAGCAAGGGACACCGGCCTATTTGACCATTTGATAAACC 689
||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||
Sbjct 734 GGCCGAAATGGATTAAGACTACAGCGAGGGACACTGGCCTGTTTGACCATTTGATAAACC 793
Query 690 TCTGGCAATTTAAGCCAGGACCCATTCCAGGAACCTGCGACCTTCATTTCCATGTAGATT 749
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 794 TCTGGCAATTTAAGCCAGGGCCCATTCCTGGAACCTGCGACCTTCACTTCCATGTAGATT 853
Query 750 TCAAATTCAACTCACCTCTCTATCGCCAGGTGGCTTCGATGTTCTTAAAGGAGGTAGCAA 809
|||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 854 TCAAATTCAATTCACCTCTCTATCGCCAGGTGGCGTCAATGTTCTTCAAGGAGGTAGCAT 913
Query 810 CAAGACTTGTAGGGGCATTTAGTGATCGATGCCGACTAGTGTATGGTCCAGGAGTCCAAG 869
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 914 CAAGACTTGTGGGGGCATTCAGTGATCGATGCCGACTAGTGTATGGTCCAGGAGTCCGAG 973
Query 870 TAGATGAGAACGCATATGAGCAAAGAGCTTGAGACATATCtatatatatat-atataATG 928
||||||| ||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 974 TAGATGAAAACGCATATGAGCAAAGAGCTTGAGACATATCTATATATATATCATGGAA-G 1032
Query 929 GAAGTAACACATCAGTTTAGTTTTCATCTTGTTTGCTAGAGAGCGATTGCGCGCATAGCA 988
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1033 TAAC-AACACATCAGTTTAGTTTTCATCTTGTTTGCTAGAGAGCGATTGCGC--ATAGCA 1089
Query 989 TGTTTTGTTTT-TTCA-TATATATGAATGCTTTTGCATAAGAAAATGAACACATTGGATG 1046
||||||||||| || | |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1090 TGTTTTGTTTTCTTAAATATATATGAATGCTTTTGCATAAGAAGATGAACACATTAGATG 1149
Query 1047 TTTGTTTAA-TGTAAAAGCAGAAAA-TAAACACATCCATTTCTCTTTTGGAGTCATTTTT 1104
||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1150 TTTGTTTAAATGTAAAAGCAGAAAAATAAACACATCCATTTCTCTGTTGGAGTCATTTTT 1209
Query 1105 T 1105
|
Sbjct 1210 T 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54166388055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5