BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493113
Length=1289
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17640.1 | Symbols: CKB2 | casein kinase II beta chain 2 | ... 1775 0.0
AT5G47080.1 | Symbols: CKB1 | casein kinase II beta chain 1 | ... 730 0.0
> AT4G17640.1 | Symbols: CKB2 | casein kinase II beta chain 2
| chr4:9825197-9827272 FORWARD LENGTH=1374
Length=1374
Score = 1775 bits (961), Expect = 0.0
Identities = 1228/1343 (91%), Gaps = 73/1343 (5%)
Strand=Plus/Plus
Query 1 CCCTGTTCTTTTATTCTTTTCTTATCTACCaaaaaaaaaaaaaactacgagcaagaacaa 60
|||||||||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 1 CCCTGTTCTTTTATTCTTTTCTTATCTA-C------AAAAAAAACTTCGAGCAAGAAC-- 51
Query 61 aaaaaaaataaaaaCTGT--ATGTA-C-CACCAAGAGACTAGTTGTCAGATAGATATTCG 116
||||||| ||||||||| ||||| | ||||| |||| |||||||||||||||||||||
Sbjct 52 -AAAAAAA-AAAAACTGTCCATGTACCACACCATGAGATTAGTTGTCAGATAGATATTCG 109
Query 117 CGAGACGAGAAGCTTTAATTCAAAACCCTAGAGCTCA--TCTCTCTCCAGGTACGGCCTT 174
|||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||
Sbjct 110 CGAGACGAGAAGCTCCAATTAAAAACCCTAGAGCTCATCTCTCTCTCCAGGTACGGCCTT 169
Query 175 TTCGTTTTTGGCTTTCACCGGCGTGGATCT-C-----C---G-G--T--G-A---C-G-G 214
|||||||||||||||||||||||||||||| | | | | | | | | | |
Sbjct 170 TTCGTTTTTGGCTTTCACCGGCGTGGATCTCCGGTGACGGGGAGATTCGGAATTTCGGAG 229
Query 215 -G---TTAGATCATGTATAGGGAGAGGGGTATGGTTGGATCGAAGTCGGAGGTGGTCGAT 270
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 230 AGATTTTAGATCATGTATAGGGAGAGAGGTATGGTTGGATCGAAGTCGGAGGTGGTCGAT 289
Query 271 CGGAAACGAATAAACGAGATTCACGATAATC-GACCCTCGCATTCGATGTCTCAGCCCGT 329
||||||||||||||||||||||||||||| | | || |||||||||||||||||||| ||
Sbjct 290 CGGAAACGAATAAACGAGATTCACGATAA-CAGGCCTTCGCATTCGATGTCTCAGCCTGT 348
Query 330 CAATGGAAAAGGCAAGGTAACAGCGACCTCCGTTTTTATGGGAAAGCAGCAATTGCATGA 389
|||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct 349 CAATGGAAAAGGCAAGGTAACATCGACCTCCGTTTTGATGGGGAAGCAGCAATTGCATGA 408
Query 390 T-AGGGA--TTCACGTTCTGGTTCTATCTCCAAGACTAACATTTCCGACGCTGTAGATAT 446
| ||| | ||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 409 TAAGGAATCTTCACGTTCTGGTTCTATCTCTAAGACTAACATTTCCGACGCTGTGGATAT 468
Query 447 ATCAGACACAGACAGTGAAGAATCAGAGGTTAGTGGTTCTGATGGAGAGGATACCTCATG 506
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 469 ATCAGACACAGACAGCGAAGAATCAGAGGTCAGTGGTTCTGATGGAGAGGACACCTCGTG 528
Query 507 GATATCGTGGTTCTGCAACCTACGTGGGAACGAGTTCTTCTGTGAAGTTGATGATGATTA 566
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 529 GATATCTTGGTTCTGCAACCTTCGTGGGAACGAGTTCTTCTGTGAAGTTGATGATGATTA 588
Query 567 CATCCAGGATGACTTTAACTTGTGTGGACTCAGCCATCAAGTTCCTTACTACGACTATGC 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 CATCCAGGATGACTTTAACTTGTGTGGACTCAGCCATCAAGTTCCTTACTACGACTATGC 648
Query 627 CCTTGATTTGATTTTGGATGTGGAGTCTTCGCATGGTGAGATGTTTACAGAAGAGCAGAA 686
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 649 CCTTGATTTGATTTTGGATGTGGAGTCTTCGCATGGTGAGATGTTTACAGAGGAACAGAA 708
Query 687 TGAATTGATCGAGTCAGCAGCAGAGATGCTATATGGAATGATTCATGCTCGTTACATATT 746
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 709 TGAATTGATCGAGTCAGCAGCAGAGATGCTATATGGAATGATTCATGCTCGTTTCATATT 768
Query 747 GACAAGCAAAGGGCTGGCTTCTATGTTAGACAAATACAAAAACTATGACTTTGGAAGATG 806
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GACTAGCAAAGGGCTGGCTTCTATGTTAGACAAATACAAAAACTATGACTTTGGAAGATG 828
Query 807 CCCAAGAGTTTATTGTTGTGGCCAACCTTGTTTACCAGTTGGTCAATCCGATATCCCTCG 866
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 829 CCCAAGAGTTTATTGTTGTGGCCAACCTTGTTTACCAGTTGGTCAATCCGATATCCCTAG 888
Query 867 AGCAAGCACCGTAAAGATATATTGCCCCAAATGTGAAGACGTCTATTACCCACGATCAAA 926
||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 889 AGCAAGCACCGTAAAGATATACTGCCCAAAATGTGAAGATGTCTATTACCCACGATCAAA 948
Query 927 ATACCAAGGAAACATAGATGGAGCTTACTTTGGGACAACGTTTCCACATCTGTTCTTGAT 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 ATACCAAGGAAACATAGATGGAGCTTACTTTGGGACAACGTTTCCACATCTGTTCTTGAT 1008
Query 987 GACGTACGGACATCTGAAGCCACAAAAGGCATCACAAAGCTACACTCCAAGAGTGTTTGG 1046
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1009 GACGTACGGGCATCTGAAGCCACAAAAGGCATCACAAAGCTACACTCAAAGAGTGTTTGG 1068
Query 1047 GTTCAAGTTACACAAGCCGTGAAGGAAACAAGGAAGAAGAAATGCACCCTTGGGTTTTGA 1106
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GTTCAAGCTACACAAGCCGTGAAGGAAACAAGGAAGAAGAAATGCACCCTTGGGTTTTGA 1128
Query 1107 GaaacaaaaaacgtgtgtaaacaaaacaaacaaaaaaaaaGACCA---GTAT----GAAG 1159
||||||| ||| |||||||||||||||||| || ||||| ||||| |||| ||||
Sbjct 1129 GAAACAAGAAATGTGTGTAAACAAAACAAA-AAGAAAAA-GACCATTTGTATCACAGAAG 1186
Query 1160 GTGAAACTAGTTC--TCTCTCTTT-TC-CTCTCTTTGtttt-ttt-ttttt--t-ttGTA 1210
||||||||||||| ||||||| | || |||||| | |||| ||| ||||| | ||||
Sbjct 1187 GTGAAACTAGTTCCATCTCTCTCTCTCTCTCTCTCT-TTTTCTTTGTTTTTGGTATTGTG 1245
Query 1211 TT--GGTaaa-a-aaaaCATTAGCAGCATGGACTGGTGAAATGAAATCCCATTATTATAA 1266
|| ||| | | ||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1246 TTTAGGTTTAGATAAAACATTAGCAGCATGGACTGGTGAACTGAAATCCCAT-ATTAT-- 1302
Query 1267 TTGTAATACTTTACCTTATTGTT 1289
| |||||||||||||||||||||
Sbjct 1303 T-GTAATACTTTACCTTATTGTT 1324
> AT5G47080.1 | Symbols: CKB1 | casein kinase II beta chain 1
| chr5:19124612-19126562 REVERSE LENGTH=1386
Length=1386
Score = 730 bits (395), Expect = 0.0
Identities = 595/691 (86%), Gaps = 15/691 (2%)
Strand=Plus/Plus
Query 389 ATAGGGATTCACGTTCTGGTTCTATCTCCAAGACTAACATTTCCGACGCTGTA-GAT-AT 446
|||| ||||| ||||||| |||| |||| ||| |||| | | | ||| | ||| |
Sbjct 353 ATAGAGATTCTCGTTCTGCTTCTCTCTCGAAG---AACAATACGGTTTCTG-ATGATGA- 407
Query 447 ATCAGACACAGACAGTGAAGAATCAGAGGTTAGTGGTTCTGATGGAGAGGATACCTCATG 506
|||||||||||| |||||||||||||| || |||||||||||||||||||| || |||||
Sbjct 408 ATCAGACACAGATAGTGAAGAATCAGATGTGAGTGGTTCTGATGGAGAGGACACTTCATG 467
Query 507 GATATCGTGGTTCTGCAACCTACGTGGGAACGAGTTCTTCTGTGAAGTTGATGATGATTA 566
|||||| ||||| || || ||| | || ||||||||||| ||||||||||||||||||||
Sbjct 468 GATATCTTGGTTTTGTAATCTAAGAGGAAACGAGTTCTTTTGTGAAGTTGATGATGATTA 527
Query 567 CATCCAGGATGACTTTAACTTGTGTGGACTCAGCCA-TCAAGTTCCTTACTACGACTATG 625
||| || |||||||| ||||||||||||||||| || || |||||| |||||||| || |
Sbjct 528 CATTCAAGATGACTTCAACTTGTGTGGACTCAG-CAGTCTAGTTCCCTACTACGAGTACG 586
Query 626 CCCTTGATTTGATTTTGGATGTGGAGTCTTCGCATGGTGAGATGTTTACAGAAGAGCAGA 685
| |||||||||||||||||||| || ||||| || || |||||||||||||| || ||||
Sbjct 587 CTCTTGATTTGATTTTGGATGTTGAATCTTCTCAAGGAGAGATGTTTACAGAGGAACAGA 646
Query 686 ATGAATTGATCGAGTCAGCAGCAGAGATGCTATATGGAATGATTCATGCTCGTTACATAT 745
|||||||||||||||||||||| |||||| | |||||| |||||||||||||||||||||
Sbjct 647 ATGAATTGATCGAGTCAGCAGCTGAGATGTTGTATGGACTGATTCATGCTCGTTACATAT 706
Query 746 TGACAAGCAAAGGGCTGGCTTCTATGTTAGACAAATACAAAAACTATGACTTTGGAAGAT 805
|||| |||||||| |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 707 TGACTAGCAAAGGATTGGCAGCAATGTTAGACAAATACAAAAACTATGACTTTGGAAGAT 766
Query 806 GCCCAAGAGTTTATTGTTGTGGCCAACCTTGT-TTACCAGTTGGTCAATCCGA-TATCCC 863
| |||||||||||||| ||||||||||||||| || || ||||||||||| || | | ||
Sbjct 767 GTCCAAGAGTTTATTGCTGTGGCCAACCTTGTCTT-CCGGTTGGTCAATCAGACT-TACC 824
Query 864 TCGAGCAAGCACCGTAAAGATATATTGCCCCAAATGTGAAGACGTCTATTACCCACGATC 923
||| | ||||| || |||||||||||||| ||||| |||||| | ||||||||||||||
Sbjct 825 GCGATCTAGCACTGTGAAGATATATTGCCCGAAATGCGAAGACATTTATTACCCACGATC 884
Query 924 AAAATACCAAGGAAACATAGATGGAGCTTACTTTGGGACAACGTTTCCACATCTGTTCTT 983
||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 885 AAAGTATCAAGGCAACATTGATGGAGCTTACTTTGGGACAACGTTTCCACATCTGTTCCT 944
Query 984 GATGACGTACGGACATCTGAAGCCA-CAAAAGGCATCACAAAGCTACACTCCAAGAGTGT 1042
|||||| || || ||||| |||||| | || |||| |||||| ||| || ||||||||
Sbjct 945 GATGACTTATGGGCATCTCAAGCCAGCGAA-GGCAACACAAAACTATGTTCAAAGAGTGT 1003
Query 1043 TTGGGTTCAAGTTACACAAGCCGTGAAGGAA 1073
|||||||||| |||||||| |||||||||||
Sbjct 1004 TTGGGTTCAAATTACACAAACCGTGAAGGAA 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63403288335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5