BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493118
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17600.1 | Symbols: LIL3:1 | Chlorophyll A-B binding family ... 1450 0.0
AT5G47110.1 | Symbols: LIL3:2 | Chlorophyll A-B binding family ... 560 8e-159
> AT4G17600.1 | Symbols: LIL3:1 | Chlorophyll A-B binding family
protein | chr4:9803705-9804872 FORWARD LENGTH=1001
Length=1001
Score = 1450 bits (785), Expect = 0.0
Identities = 902/956 (94%), Gaps = 17/956 (2%)
Strand=Plus/Plus
Query 1 AAGAAGAAAGCTTAACAATGGCGTTGTTCTCCCCGCCAatctcttcttcatctcttcaaa 60
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 38 AAGAAGAAACCACAACAATGGCGTTGTTCTCCCCGCCAATCTCTTCTTCATCTCTTCAAA 97
Query 61 atccctatttcatccccaaattctcattctctcttctctccactaaccgcttctctctcc 120
||||| ||||||| |||||||| |||||||| || ||||||| |||||||||||||||||
Sbjct 98 ATCCCAATTTCATTCCCAAATTTTCATTCTCCCTCCTCTCCAGTAACCGCTTCTCTCTCC 157
Query 121 tctcCGTCACTCGAGCTTCCTCCGACAGTGGATCAACCTCTCCCACCTCCGCCACCGCCG 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 158 TCTCCGTCACTCGAGCTTCCTCCGACAGTGGATCAACCTCTCCCACCGCCGCCGTCTCCG 217
Query 181 TAGAGGCTCCTGAGCCTGTGGAGGTGATAATTAAAGAAG-CTCCGCAATCAACACCGGCG 239
| |||||||||||||| ||||| |||||| |||||| || ||||||||||||||||||||
Sbjct 218 TGGAGGCTCCTGAGCCCGTGGAAGTGATAGTTAAAG-AGCCTCCGCAATCAACACCGGCG 276
Query 240 GTTACAAAGGAAGAAATCACCACCGCCAAAAATGTCGCCGTTGAAGGTGAAGAGATGAAA 299
|||| ||||||||||| | ||||||| |||||||||||||| ||||||||||||||||||
Sbjct 277 GTTAAAAAGGAAGAAACCGCCACCGCTAAAAATGTCGCCGTCGAAGGTGAAGAGATGAAA 336
Query 300 ACGACGGAGACG-GTTATCAAATTCCAGGATGCGAGATGGATTAATGGAACTTGGGATCT 358
|| ||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 ACAACGGAGA-GTGTTGTCAAATTCCAGGATGCGAGATGGATTAATGGAACTTGGGATCT 395
Query 359 GAAACAGTTCGAGAAAGATGGAAAAACCGATTGGGATTCTGTAATCGTTGCTGAGGCAAA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 GAAACAGTTCGAGAAAGATGGAAAAACCGATTGGGATTCTGTAATCGTTGCTGAGGCAAA 455
Query 419 GAGAAGAAAATGGCTAGAAGAGAATCCAGAAACAACGAGTAACGACGAACCAGTGCTTTT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 GAGAAGAAAATGGCTAGAAGAGAATCCAGAAACAACGAGTAACGACGAACCAGTGCTTTT 515
Query 479 CGATACATCGATTATTCCATGGTGGGCTTGGATTAAGAGATACCACTTACCTGAAGCTGA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 CGATACATCGATTATTCCATGGTGGGCTTGGATTAAGAGATACCACTTACCTGAAGCTGA 575
Query 539 ACTCTTAAATGGTCGTGCTGCGATGATAGGATTCTTTATGGCTTACTTTGTCGATAGTCT 598
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 576 ACTCTTAAATGGTCGTGCGGCGATGATAGGATTCTTTATGGCTTACTTTGTCGATAGTCT 635
Query 599 TACCGGAGTAGGACTTGTCGATCAAATGGGGAATTTCTTCTGCAAGACACTCTTGTTTGT 658
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 636 TACCGGAGTAGGACTTGTTGATCAAATGGGGAATTTCTTCTGCAAGACACTATTGTTTGT 695
Query 659 GGCTGTGGCTGGAGTTTTGTTTATCCGTAAGAATGAGGATGTTGATAAACTCAAGAACTT 718
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 696 GGCTGTGGCTGGAGTTTTGTTTATTCGTAAGAATGAGGATGTGGATAAACTCAAGAACTT 755
Query 719 GTTTGATGAGACTACATTATATGATAAGCAATGGCAAGCAGCTTGGAAAAATGATGATGA 778
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 756 GTTTGATGAGACTACATTGTATGATAAGCAATGGCAAGCAGCTTGGAAAAATGATGATGA 815
Query 779 TGAGTCATTGGGTTCTAAGAAG---TGATAACAAAGATT-TT-CTTGCTTTCTTTGTTTT 833
|||||||||||||||||||||| |||||||||||||| || ||| |||| |||||| |
Sbjct 816 TGAGTCATTGGGTTCTAAGAAGAAGTGATAACAAAGATTCTTGCTTTCTTTTTTTGTTGT 875
Query 834 TGTTGTAATTAGGAGATGAACTTACCAAATGTAATATGAAGAGATTTGAACAATGTTTCC 893
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 876 TGTTGTAATTAGGAGATGAACTTACCAAATGTAATATCAAGAGATTTGAACAATGTTTCC 935
Query 894 TCAGATTATCC-TTGATCATTTCTTTTAGCCATCTCTACTTCACTTAATCTAATTA 948
|||||||| || || ||||| ||| || ||||||||| ||||||||||||||
Sbjct 936 TCAGATTA-CCGTTAATCATGTCT---AG---TCTCTACTTAACTTAATCTAATTA 984
> AT5G47110.1 | Symbols: LIL3:2 | Chlorophyll A-B binding family
protein | chr5:19133986-19135317 REVERSE LENGTH=1088
Length=1088
Score = 560 bits (303), Expect = 8e-159
Identities = 445/511 (87%), Gaps = 19/511 (4%)
Strand=Plus/Plus
Query 268 AAAATGTCGCCGTTGAAGGTGAAGAGA-TGAAAAC--G-ACGGAGACGGTTATCAAAT-T 322
|||| | |||||||| |||||||| || || | | | || |||||||| ||||||| |
Sbjct 318 AAAACGGCGCCGTTGGAGGTGAAGCGACTG-ATTCGAGTACTGAGACGGTAATCAAATAT 376
Query 323 CCAGGATGCG-AGATGGATTAATGGAACTTGGGATCTGAAACAGTTCGAGAAAGATGGAA 381
||| ||||| || ||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 377 -CAGAATGCGAAG-TGGGTTAATGGAACTTGGGATCTGAAACAGTTCGAGAAAGATGGCA 434
Query 382 AAACCGATTGGGATTCTGTAATCGTTGCTGAGGCAAAGAGAAGAAAATGGCTAGAAGAGA 441
|||| |||||||||||||| |||||| ||||||||||||| ||||||||||| ||||| |
Sbjct 435 AAACTGATTGGGATTCTGTTATCGTTTCTGAGGCAAAGAGGAGAAAATGGCTTGAAGATA 494
Query 442 ATCCAGAAACAACGAGTAACGACGAACCAGT-GCTTTTCGATACATCGATTATTCCATGG 500
| || |||||||||||||||||||| | || | | |||||||| |||||||||||||||
Sbjct 495 ACCCGGAAACAACGAGTAACGACGAGCTTGTTG-TCTTCGATACTTCGATTATTCCATGG 553
Query 501 TGGGCTTGGATTAAGAGATACCA-CTTACCTGAAGCTGAACT-CTTAAATGGTCGTGCTG 558
||||| ||||| ||||||||||| || ||||||||||||||| || || |||||||||||
Sbjct 554 TGGGCATGGATGAAGAGATACCATCT-ACCTGAAGCTGAACTTCTCAA-TGGTCGTGCTG 611
Query 559 CGATGATAGGATTCTTTATGGCTTACTTTGTCGATAGTCTTACCGGAGTAGGACTTGTCG 618
|||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 612 CGATGATAGGGTTCTTCATGGCTTACTTTGTTGATAGTCTTACCGGAGTAGGACTTGTTG 671
Query 619 ATCAAATGGGGAATTTCTTCTGCAAGACACTCTTGTTTGTGGCTGTGGCTGGAGTTTTGT 678
|||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| | |
Sbjct 672 ATCAAATGGGAAATTTCTTCTGCAAAACACTCTTGTTTGTGGCTGTAGCTGGAGTTCTCT 731
Query 679 TTATCCGTAAGAATGAGGATGTT-GATAAACTCAAGAA-CTTGTTTGATGAGACTACATT 736
| |||||||||||||| ||| || || ||||| ||| | || ||| ||||||||||| ||
Sbjct 732 TCATCCGTAAGAATGAAGAT-TTAGACAAACTTAAGGATCT-GTTCGATGAGACTACGTT 789
Query 737 ATATGATAAGCAATGGCAAGCAGCTTGGAAA 767
|||||| || ||||||||||| || ||||||
Sbjct 790 ATATGACAAACAATGGCAAGCTGCATGGAAA 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5