BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493119
Length=740
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17580.1 | Symbols: | Bax inhibitor-1 family protein | chr4... 1090 0.0
AT5G47120.1 | Symbols: ATBI-1, BI-1, ATBI1, BI1 | BAX inhibitor... 361 7e-99
> AT4G17580.1 | Symbols: | Bax inhibitor-1 family protein | chr4:9789789-9791145
REVERSE LENGTH=744
Length=744
Score = 1090 bits (590), Expect = 0.0
Identities = 693/743 (93%), Gaps = 6/743 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGCGAACGGTACGATTTGGAGCCATGATTCTCTCAGAAACTTC-CATGAATTCAC 59
||||| |||||||||||||||||||||||||||| |||||||||| || ||||||||| |
Sbjct 1 ATGGAGGCGAACGGTACGATTTGGAGCCATGATTATCTCAGAAAC-TCTCATGAATTCTC 59
Query 60 TCCTGCTGTGCAGAATCATCTAAAGCGGTTTTGTATTGTTCTTGATTCTCGTTGTTGTGT 119
||| || |||||||||||||| |||||||||||||||||||||| ||| | | |||||||
Sbjct 60 TCCGGCCGTGCAGAATCATCTTAAGCGGTTTTGTATTGTTCTTGGTTCGCATCGTTGTGT 119
Query 120 TCTTGATCTCTATCTCACGTTATTTTTTGCTCTTCTTGCGTCTGCGTTTGGAGCTTAC-C 178
| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 120 TATTGATCTCTATCTCACGTTATTCTTTGCTCTTCTTGCGTCTGCGATTGGAGCTTACAT 179
Query 179 TC-CATGTGCTCTGGAATATCGGTGGAAATGTCACTACTCTTGGATTCACTGGAACCATG 237
|| |||| | |||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 180 TCACATG-G-TCTGGAATATCGGTGGAAATGTCAGTACTCTTGGATTCAGTGGAATCATG 237
Query 238 ATCTGGTTGCGTTTCACTCCTTATGCAGCAAAGAGGCTTTTCCTTCTGTTTCTCTCTGCC 297
|| |||||||||||||||| ||||| | | || | ||| | |||||||||||| | ||||
Sbjct 238 ATTTGGTTGCGTTTCACTCTTTATGAACCTAACATGCTCTACCTTCTGTTTCTATTTGCC 297
Query 298 CTTCTTAAAGGTGCTTCATTTGGTCCCATGATCATGTTGGTCATTGATTTTGATTCAAGC 357
|||||||||||||||||| ||||||||||||||||| | |||||||||||||| ||||||
Sbjct 298 CTTCTTAAAGGTGCTTCAGTTGGTCCCATGATCATGCTAGTCATTGATTTTGACTCAAGC 357
Query 358 GTCCTGGTCACTGCATTTGTGGGAACAGCAGTAGTATTTGTGTGTTTCTCCGCTGCAGCA 417
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 358 GTCCTGGTCACTGCATTTGTGGGAACAGCAGTAGCATTTGTGTGTTTCTCCGCTGCAGCA 417
Query 418 ATGTTGGCAACGCGTAGAGAGTACCTTTACCTCGGAGCTTCACTTTCTTGTAGTATGTCC 477
||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||
Sbjct 418 ATGTTGGCAACGCGTAGAGAGTACCTTTACCACGGAGCTTCACTTGCTTGTTGTATGTCC 477
Query 478 ATCCTTTGGTGGGTAAAAATTGCCTCTTCGATCTTCGGTGGCTCTACAACTGTCGTCAAG 537
||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 478 ATCCTTTGGTGGGTACAAATTGCCTCTTCCATCTTCGGAGGCTCTACAACTGTCGTCAAG 537
Query 538 TTTGAGCTATACTTTGGACTCTTGATCTTTGTGGGATACATAGTGGTGGACACACAGATG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTTGAGCTATACTTTGGACTCTTGATCTTTGTGGGATACATAGTGGTGGACACACAGATG 597
Query 598 ATAATCGAGAAAGCACACCATGGTGATATGGACTATGTGCAACATTCTTTTACCTTTTTC 657
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATAACCGAGAAAGCACACCACGGTGATATGGACTATGTGCAACATTCTTTTACCTTTTTC 657
Query 658 ACTCACTTTGCTTCTCTGTTTGTTCGAATTCTCGTTCTCAACATGTTTAGGAAGATGAAG 717
||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 658 ACTGACTTTGCTTCTCTATTTGTTCAAATTCTCGTTCTCAACATGTTTAGGAAGATGAAG 717
Query 718 AAAGGAAGAAAAGACCGAAGAAA 740
|||||||||||||||||||||||
Sbjct 718 AAAGGAAGAAAAGACCGAAGAAA 740
> AT5G47120.1 | Symbols: ATBI-1, BI-1, ATBI1, BI1 | BAX inhibitor
1 | chr5:19136023-19137942 FORWARD LENGTH=1149
Length=1149
Score = 361 bits (195), Expect = 7e-99
Identities = 454/574 (79%), Gaps = 38/574 (7%)
Strand=Plus/Plus
Query 139 TTATTTTTTGCTCTTCTTGCGTCTGCGTTTGGAGCTTACCTCCATGTGCTCTGGAATATC 198
|||| || ||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 175 TTATGTTGTGCTCTTGTGGCGTCTGCCTTTGGAGCTTACCTCCATGTGCTCTGGAATATC 234
Query 199 GGTGGAAATGTCACTACTCTTGGAT-TCACTGGAACCATGATCTGGTTGCGTTTCA---C 254
|| || | | | || || |||||| | | |||||| ||||| ||| | | ||||| |
Sbjct 235 GGCGGTATTCTTACAACGATTGGATGT-ATTGGAACTATGATTTGGCTCC-TTTCATGTC 292
Query 255 -TCCTTATG--CAGCAAAGA-GGCTTT-TCCTTCTGTTTCTCTCTGCCCTTCTTAAAGGT 309
|||||||| || |||| | |||||| || |||||||| | ||||| ||||| |||||
Sbjct 293 CTCCTTATGAACACCAAAAAAGGCTTTCTC-TTCTGTTTGTGTCTGCTGTTCTTGAAGGT 351
Query 310 GCTTCAT-TTGGTCCCATGATCAT-GTTGGTCA-TTGATTTTGATTCAAGCGTCCTGGTC 366
||||| | |||| ||| |||||| || || || ||||| |||| ||||| |||| ||
Sbjct 352 GCTTC-TGTTGGCCCCTTGATCAAAGT-GG-CAATTGATGTTGACCCAAGCATCCTTATC 408
Query 367 ACTGCATTTGTGGGAACAGC-AGTAGTATTTGTGTGTTTCTCCGCTGCAGCAATGTTGGC 425
||||||||||| ||||| || | ||| ||||| |||||||| || ||||||||||| ||
Sbjct 409 ACTGCATTTGTTGGAACTGCGA-TAGCGTTTGTCTGTTTCTCAGCAGCAGCAATGTTAGC 467
Query 426 AACG-CGTAGAGAGTACCTTTACCTCGGAG--CTTCACTTTCTTGTAG-TATGTCCATCC 481
|| | || || ||||| || ||||| |||| || | |||| | | | | |||| || |
Sbjct 468 AA-GACGCAGGGAGTATCTCTACCTTGGAGGACTGC--TTTCATCTGGCT-TGTCTATGC 523
Query 482 TT-TGGTGGGTAAAAATTGCCTCTTCGATCTTCGGTGGCTCTACAACTGTCGTCAAGTTT 540
| || ||| | | |||||||||| ||||| ||||||||| || || || | ||||||
Sbjct 524 TAATG-TGGCTCCAGTTTGCCTCTTCAATCTTTGGTGGCTCTGCATCTATCTTTAAGTTT 582
Query 541 GAGCTATACTTTGGACTCTTGATCTTTGTGGGATACATAGTGGTGGACACACA-GATGAT 599
||| | ||||||||||| |||||||||||||||||||| |||||||||||||| || |||
Sbjct 583 GAGTTGTACTTTGGACTTTTGATCTTTGTGGGATACATGGTGGTGGACACACAAGA-GAT 641
Query 600 AATCGAGAAAG-CACACCAT-GGTGATATGGACTATGTGCAACATTCTTTTACCTTTTTC 657
|| || |||| |||||| | ||||| ||||||||||| ||||||| || ||| |||||
Sbjct 642 TATAGA-AAAGGCACACC-TCGGTGACATGGACTATGTAAAACATTCGTTGACCCTTTTC 699
Query 658 ACTCACTTTGCTT-CTCTGTTTGTTCGAATTCTC 690
||| |||||| | || |||||||||| ||||||
Sbjct 700 ACTGACTTTG-TAGCTGTGTTTGTTCGGATTCTC 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35917415105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5