BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493120
Length=2418
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17570.2 | Symbols: GATA26 | GATA transcription factor 26 | ... 2859 0.0
AT5G47140.1 | Symbols: GATA27 | GATA transcription factor 27 | ... 278 2e-73
> AT4G17570.2 | Symbols: GATA26 | GATA transcription factor 26
| chr4:9783888-9787498 REVERSE LENGTH=2359
Length=2359
Score = 2859 bits (1548), Expect = 0.0
Identities = 1828/1954 (94%), Gaps = 55/1954 (3%)
Strand=Plus/Plus
Query 506 ACACACCTTTGTGGCGAAATGGACCACCAGAGAAGCCTGTATTGTGCAATGCGTGTGGAT 565
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 414 ACACACCTTTGTGGAGAAATGGACCACCAGAGAAGCCGGTATTGTGCAATGCGTGTGGAT 473
Query 566 CGCGTTGGAGAACAAAGGGAACACTTGTGAACTATACACCGCTTCATGCTCGTGCTGATG 625
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 474 CGCGTTGGAGGACAAAGGGAACACTTGTGAACTACACACCGCTTCATGCTCGTGCTGATG 533
Query 626 GTGATGAGAATGATGATCAGCACAGGTTTCAAAGAATGAAGAGCATTTCTGTAAGCTATA 685
||||||||||||||||||| |||||||||||||||||||||||||||||| || || |||
Sbjct 534 GTGATGAGAATGATGATCATCACAGGTTTCAAAGAATGAAGAGCATTTCTTTAGGCAATA 593
Query 686 AGAACAAAGAGACAAAGATGCTCAAGAGGAAAGCAATTCAAGAAAACATCATCATTAAAA 745
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 AGAACAAAGAGATAAAGATGCTCAAGAGGAAAGCAATTCAAGAAAACATCATCATTAAAA 653
Query 746 GACCGGTCTTGGAATTCAATTATGGTTTGAAGAAGGCTGTGATAGAGGAGGATGCTAGTA 805
|||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 654 GACCGGTCTTTGAATTCAGTTATGGTTTGAAGGCGGCTGTGATAGAGGAGGATGCTAGTA 713
Query 806 ATAGATCAAGTTCTGGTTCGGCTGTATCAAACTCTGAGAGCTGTGCACAGTTTAGTAGTG 865
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 714 ATAGATCGAGTTCCGGTTCGGCTGTATCAAACTCTGAGAGCTGTGCACAGTTTAGCAGTG 773
Query 866 CAGAT----G-G-G-----A-GTCCATCTCAATCTAATGCGTGGGACACAACTGTTCCTT 913
||||| | | | | |||||||||||||||||||||||||||||||||||||||
Sbjct 774 CAGATGGGAGTGAGTTAACAGGTCCATCTCAATCTAATGCGTGGGACACAACTGTTCCTT 833
Query 914 GCAAGAGGAGGACGTGTGTGGGCCGTCCAAAGTCCTCTTCTGTTGAAAAGCTCACAAAGG 973
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 834 GCAAGAGGAGGACGTGTGTGGGCCGTCCTAAGTCCTCTTCTGTTGAAAAGCTCACAAAGG 893
Query 974 ACCTTTACAATATTTTACAAGAGCAGCAATCTTCGTGTCTCTCAGTTTCATCAGAGGAAG 1033
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 894 ACCTTTACAATATTTTACAAGAGCAGCAATCGTCATGTCTCTCAGTTTCATCAGAGGAAG 953
Query 1034 ATCTTCTTTTTGAGAATGAAATGTCAATGGTCTCTGTTGAGATTGGACATGGGAGTGTTC 1093
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 954 ATCTTCTTTTTGAGAATGAAATGTCAATGGTCTCAGTTGAGATTGGACATGGGAGTGTTC 1013
Query 1094 TGATGAAGAATCCCCATTCGTTTTCTCGGGAAGAGGAGTCTGAAGCCAGCTCGCTCTCTT 1153
|||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1014 TGATGAAGAATCCCCACTCGTTTGCTCGGGAAGAGGAGTCTGAAGCCAGCTCACTCTCTT 1073
Query 1154 CGATTGAGAACAAGTCTTCCATCAGTGAGGCATACTCACATTCTGTGAAGCGTGTTGAGA 1213
|||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1074 CGATTGAGAACAAGTCCTCCATCAGTGACGCATACTCACATTCCGTGAAGCGTGTTGAGA 1133
Query 1214 TTGGAGCAGAGAGAGGTTCATACTATGGTGGACAAACAATAAAGCAAGAACAATTCAAGA 1273
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1134 TTGGAGCAGTGAGAGGTTCATATTATGGTGGACAAACAATAAAGCAAGAACAATTCAAGA 1193
Query 1274 GAAACAAGTCTCAAACTGAAAGAGTGCATGTCCTGGGGAGCCATGGTTCACCACTCTGTA 1333
||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1194 GAACCAAGTCTCAAACTGAAAGAGTGCATGTCCTGGGGAGTCATGGTTCACCACTATGTA 1253
Query 1334 GCATAGATTTGAAGGATGTTTTCAACTTTAATGAGTTCATAGAACAATTCACAGAGGAAG 1393
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1254 GCATAGATTTGAAGGATGTTTTCAACTTTGATGAGTTCATAGAACAATTCACAGAGGAAG 1313
Query 1394 AACAGAAGAAACTGATGAAATTGCTTCCTCAGATTGACTCTGATGACCTTCCTGATAGCC 1453
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1314 AACAGAAGAAACTGATGAACTTGCTTCCTCAGATTGACTCTGATGACCTTCCTCATAGCC 1373
Query 1454 TCAGAATTATGTTCGAAAGTGCTCAGTTCAAGGACAACTTCTCTTTGTTTCAGCAGCTCA 1513
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TCAGAATGATGTTTGAAAGTGCTCAGTTCAAGGACAACTTCTCTTTGTTTCAGCAGCTCA 1433
Query 1514 TTGCTGATGGTGTCTTTGATGTCTCTTCTTCCTCTGGGGCAAAACTCGAAGACATCAGGA 1573
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 1434 TTGCTGATGGTGTCTTTGATGTGTCTTCTTCCTCGGGGGCAAAACTCGAAGAAATCAGGA 1493
Query 1574 CTTTTAAGAAGCTTGCTTTGACAGATTTCAACAAATCTCGTTTGGTGGAAAGCTATAACC 1633
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1494 CTTTTAAGAAGCTTGCTTTGACAGATTTTAACAAATCTCGTTTGGTGGAAAGCTATAACC 1553
Query 1634 TCCTCAAGGAACGAGAAAAAGGGACCGGGGATTCTGTTACTACAACTTCAAAAATCTCAA 1693
||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1554 TCCTCAAGGAACGCGAAAAAGGGACCGGAGATTCTGTTACTACAACTTCAAAAAGCTCAA 1613
Query 1694 TCCCAAATGTACCTAAAAATATTGTAACCATTAAGAGGCGCTGTGAAGACCAAAACCAAT 1753
|||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||
Sbjct 1614 TCCCAAATGTACCTAAAAATATTGTAACCATTAAGAGGCGCTATGAAAACCAAATCCAAG 1673
Query 1754 TTAAGTCAGAGTCAAGGGGGCTAATGAGGAGCCCCAAAAGGGTGATGAAGATGAAAGCAA 1813
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 TAAAGTCAGAGTCAAGGGGGCTAATGAGGAGCCCCAAAAGGGTGATGAAGATGAAAGCAA 1733
Query 1814 GCCATGAGACAGAGAACAATGTCTCATGCTTCAGACCAAGAAGCTTGACTTCTGTGTTTG 1873
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1734 GCCATGAGACAGAGAACAATGTCTCATGCTTCAGACCAAGAAGCTTGGCTTCTGTGTTTG 1793
Query 1874 CACAAGAAGGTGGCTCTGCAGTGTTTGGCTATGAAGGTAATTGCAGTTCTGATCAAGATC 1933
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1794 CACAAGAAGGTGGCTCTGCAGTGTTTAGCTATGAAGGTAATTGCAGTTCTGATCAAGATC 1853
Query 1934 TCCTTCTTCTGGACTTGCCGTCAAACGGGTCATTTCCTCAAGCAGAGCTGCTTCACCAAC 1993
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1854 TCCTTCTTCTGGACTTGCCGTCAAACGGGTCATTTCCTCAAGCAGAGCTACTTCACCAAC 1913
Query 1994 TCTGAGAGGTCAAAGCTTCAGC-CCTCATTGAGCTTCTCAGAGTTTAAAAGAAGGATTTT 2052
||||| ||||||||||| || |||||||||||||||||||| ||||| |||||||| |
Sbjct 1914 TCTGAAAGGTCAAAGCTACAAAACCTCATTGAGCTTCTCAGAGCTTAAAGGAAGGATTCT 1973
Query 2053 TAAGCTCTATATCTTATCTTGATTGATCGAGAATGACGAGAGAGACTCTTAGGCTTTCTG 2112
|||||||| ||||| |||| || | || ||| |||| | ||||||| ||||||||
Sbjct 1974 TAAGCTCTCTATCTC-TCTTC-TT--T-GA---TGA-GAGATATACTCTTAAGCTTTCTG 2024
Query 2113 AGAAAACGACCAAA-TGAGGTTTCTGCTTTAGAAATTGGAATTTGCAGACATAAGAAAAA 2171
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2025 AGAAAACGACCAAAATGAGGTTTCTGCTTTAGAAATTGGAATTTGCAGACATAA-AAAAA 2083
Query 2172 AGGAAGGATTTTTATTTGAGTCTTGCTTGGGCTTCTCTTTTGTGGTTAAGTTTATAAAGG 2231
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2084 -GGAAGGATATTTATTTGAGTCTTGCTTGGGCTTCTCTTTGGTGGTTAAGTTTATAAAG- 2141
Query 2232 TGGGTCTTATAATATACATA--TATACATAAAGcctcttctcttacctctctttcagtga 2289
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 2142 TGGGTCTTATAATATACATACATATACATAAAGCCTCTTCTCTTACCTCTCTTTCTGTGA 2201
Query 2290 cccttttaatttt----ttg---gtt---tctttt-------ctt-t----ggacctttt 2327
||||||||||||| ||| ||| |||||| ||| | |||| ||||
Sbjct 2202 CCCTTTTAATTTTAAACTTGAAAGTTCCATCTTTTTTGGTTTCTTATCTTTGGACTTTTT 2261
Query 2328 tagtttctgcttctttttttGTATAGGATGAAAA-GATACTGTAATATCATGTAAACCTC 2386
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 2262 TAGTTTCTGCTTTTTTTTTTGTATAGGATGAAAAAGATACTGTAATATCATGTAAAC-T- 2319
Query 2387 TCC-AAA-TGCAGAAAATGGAGTAAATGAGTACT 2418
||| ||| ||||||||||||| || |||||||||
Sbjct 2320 TCCGAAAATGCAGAAAATGGAATACATGAGTACT 2353
Score = 248 bits (134), Expect = 2e-64
Identities = 172/189 (91%), Gaps = 7/189 (4%)
Strand=Plus/Plus
Query 1 ACAGCCATTTATTAGATTCCTCTCTCACAATTAGTCTCTTCTCTTTTCTATTGGATTGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 39 ACAGCCATTTATTAGATTCCTCTCTCACAATTAGTCTCTTCTCTTTTCTATTGGATTGTT 98
Query 61 GTATTAGACTGATAGCTCAAGGAACCCCaaaaaaaaaaaaaaagataaacaaaggataaa 120
||||||||||||||||||||||||||| |||||| ||||| | | ||| | | ||||
Sbjct 99 GTATTAGACTGATAGCTCAAGGAACCC-AAAAAACAAAAACCA-A-AAA-A--G-ATAAC 151
Query 121 aaaaaTTATCTTCTTGAAATTGTTCTCTTTCTTGGTTTGATTTTGTCAATTTTCATAAAC 180
| |||||||||||||||||||||||||||||||| ||||||||| ||||||||| || ||
Sbjct 152 ATAAATTATCTTCTTGAAATTGTTCTCTTTCTTGCTTTGATTTTTTCAATTTTCTTATAC 211
Query 181 TCAGTTTTT 189
| |||||||
Sbjct 212 TGAGTTTTT 220
> AT5G47140.1 | Symbols: GATA27 | GATA transcription factor 27
| chr5:19144635-19147489 FORWARD LENGTH=2072
Length=2072
Score = 278 bits (150), Expect = 2e-73
Identities = 282/343 (82%), Gaps = 19/343 (6%)
Strand=Plus/Plus
Query 1315 CATGGTTCACCACTCTGTAGCATAGATTTGAAGGATGTTTTCAACTTTAATGAGTTCATA 1374
||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1221 CATAGTTCACTACTCTGTAGCATAGATTTGAAGGATGTTTTCAACTTTGATGAGTTCATA 1280
Query 1375 GAACAATT-CACAGAGGAAGAACAG-AAGAAACTGATGAAATTGCTTCCTCA-GATTGAC 1431
||| |||| |||||||||||||||| || |||||||||||||| |||||||| | |||||
Sbjct 1281 GAA-AATTTCACAGAGGAAGAACAGCAA-AAACTGATGAAATTACTTCCTCAAG-TTGAC 1337
Query 1432 TCTGATGACCTTCCTGATAGCCTCAGAATTATGTTCGAAAGTGCTCAGTTCAAGGACAAC 1491
|||| ||| | ||||||||||||||||| ||||| || ||| |||| ||||| || |||
Sbjct 1338 TCTGTTGATCGTCCTGATAGCCTCAGAAGCATGTTTGAGAGTTCTCAATTCAAAGAGAAC 1397
Query 1492 TTCTCTTTGTTTCAGCAGCTCATTGCTGATGGTGTCTTTGATGTCTC-TTCTTCCTCTGG 1550
|| || ||||||||||| || | || |||||||| ||||| | | ||| || | ||
Sbjct 1398 TTATCCTTGTTTCAGCAACTTGTGGCAGATGGTGTTTTTGA-GACAAATTCGTCTTATG- 1455
Query 1551 GGCAAAACTCGAAGACATCAGGACTTTTA-AGAAGCTTGCTTTGA-CAGATT-TCAACAA 1607
||||||| |||||||| | ||| || | ||||||||||| | ||||| | |||||
Sbjct 1456 --CAAAACTTGAAGACATTAAGACACTTGCA-AAGCTTGCTTT-ATCAGATCCT-AACAA 1510
Query 1608 ATCTCGTTTGGTGGAAAGCTATAACCTCCTCAAG-GAACGAGA 1649
||| | |||| ||||||||||| || | |||||| ||| ||||
Sbjct 1511 ATCCCATTTGTTGGAAAGCTATTACATGCTCAAGAGAA-GAGA 1552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120079703640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5