BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493122
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17540.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1539 0.0
AT4G17550.1 | Symbols: | Major facilitator superfamily protein... 276 4e-73
> AT4G17540.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9775841-9777835
FORWARD LENGTH=1096
Length=1096
Score = 1539 bits (833), Expect = 0.0
Identities = 1005/1086 (93%), Gaps = 20/1086 (2%)
Strand=Plus/Plus
Query 1 TCTTGCTTTCTCGACAGTTCGGTAACTTCTACTACGCCAATGGAAAACAGGCGGGAAACC 60
||||||||| || |||||||||| | |||||| ||| | |||||||||||||||||
Sbjct 19 TCTTGCTTTATCAACAGTTCGGT-A-----ACTACGACAAAGAAAAACAGGCGGGAAACC 72
Query 61 AAATCAATGGAGGATTCTTAGCTTTTTCTGGAAG-AAGTCCCATTATCATATCTTCAGAT 119
||||||||||||||||||||||||||||| | || |||||||||| ||||||||| |
Sbjct 73 AAATCAATGGAGGATTCTTAGCTTTTTCT--CTGTAACTCCCATTATCGTATCTTCAGCT 130
Query 120 TAGTGAGAGAG-TGAAAAGAGA-TGGAGGAAAGCGGCGGCGGCAGCAATGGTGTGGTGAT 177
|||||||| || || | || | ||| || | || | |||||||||||||||||||
Sbjct 131 TAGTGAGATAGATG-GAGGAAATTGGCGG-CGGAAGCATCAGCAGCAATGGTGTGGTGAT 188
Query 178 GAAGAAGGAAGGATTAGGGTTTTCT-AATGGAGGAATAAAAATAGAGAATCCATTTGCTT 236
||||||||||||||||||||||||| || || ||||| |||||||||||||| |||||||
Sbjct 189 GAAGAAGGAAGGATTAGGGTTTTCTAAAAGG-GGAATTAAAATAGAGAATCCTTTTGCTT 247
Query 237 TTAAAGCTCTTCAAGTATTCACGGGATTTGGCGTTGGTTGTGGAGTTGGTATCGGCAGTG 296
|||| ||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 248 TTAAGGCTCTTCAAGTCTTCACTGGATTTGGCGTTGGTTGTGGAGTTGGTATTGGTAGTG 307
Query 297 GTGCACCTTTGAATCTCGGTAGTATTCCAATGGTGGGGGAAATTATGAATTCAGCTAGAG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GTGCACCTTTGAATCTCGGTAGTATTCCAATGGTGGGGGAAATTATGAATTCAGCTAGAG 367
Query 357 GAGCAACCAATGTATTTTCGGGTGCCACACACCACGTCAATGGCGCTTTGCGGAAGCTTG 416
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 368 GAGCAACCAATGTATTTTCGGGTGCCACACACCACGTGAATGGCGCTTTGCGGAAGCTTG 427
Query 417 GAGCTAAGAACATTAAAGCAGGTGTTGGCTGTGGAGTTGGCGTCGGTCATGGTTTTGGAG 476
|||| | ||||||| |||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 428 GAGCGAGGAACATTCAAGCAGGTGTTGGCTGTGGAGTTGGCTTTGGTCATGGTTTCGGAG 487
Query 477 TTGGCATCGCAGTGAAACCAAGTGCCATACACAAACTTCAAGCTTCTATTATGGGAACTG 536
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TTGGCATTGCAGTGAAACCAAGTGCCATACACAAACTTCAAGCTTCTATTATGGGAACTG 547
Query 537 CATCCAACTTGATGACTAAACTTGGAAGAACTAGTGAGACCACCTCAAGTCAAACCGAGA 596
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 548 CATCCAACTTGATGACTAAACTTGGAAGAACGAGTGAGACCACCTCAAGTCAAACTGAGA 607
Query 597 -TAGAAGACCAGGTTTCTCAATCTGTAACCGGTCACAAGAAACATGTGGACACAAAAGCA 655
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 CT-GAAGACCAGGTGTCTCAATCTGTAACCGGTCACAAGAAACATGTGGACACAAAAGCA 666
Query 656 GCTTTCAAGAACAGTGGTTCCTCTACTGATTCAAGAACGTTTGGTACTCGAACTGAGAAA 715
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 667 TCTTTGAAGAACAGTGGTTCCTCTACTAATTCAAGAACGTTTGGTACTCGAACTGAGAAA 726
Query 716 GTGATCAACAGTTTTCTCGAAAATCCGATTCTGAAACAACAGGACACAACTGCGGTAGAA 775
|||||||||||||||||||| || || ||||||||||| |||||||||||||||| ||||
Sbjct 727 GTGATCAACAGTTTTCTCGACAACCCTATTCTGAAACACCAGGACACAACTGCGGAAGAA 786
Query 776 CAACAGGTCACACAACTGGAATCAGAGAGCTTAATGCTTCAAATGGTGCTGAAACATCAG 835
| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 787 CGACAGGTCACACAACTAGAATCGGAGAGCTTAATGCTTCAAATGGTGCTGAAACATCAG 846
Query 836 AAACTCATCGATGAAGTAATGGAAGAGAACGAAAAGCTTCGAAGGATAATCATAGAAGAT 895
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 AAACTCATTGATGAAGTAATGGAAGAGAACGAAAAGCTTCGAAGGATAATCATAGAAGAT 906
Query 896 CTCAAAGTTTCACCCGAAAAACTCAAATTAGTTTCCTCTTACAAGTACGAAACACCACCA 955
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 907 CTCAAAGTTTCACCCGAAAAACTGAAATTAGTTTCCTCTTACAATTACGAAACACCACCA 966
Query 956 TGCAAAGATTGCTTCGAGTGTCGTAGAAAACAGAGAAGAAATAGAGGAAGAAAGCTGTAA 1015
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 TGCAAAGATTGCTTTGAGTGTCGTAGAAAACAGAGAAGAAATAGAGGAAGAAAGCTGTAA 1026
Query 1016 GCCAATTCCTTCATTTGTTATGAGATGaaaaaaaaaT--CACAATATCTGACAAAACATA 1073
|||||||||||||||||||||||||| ||| ||| | ||||||||| ||||||||| |
Sbjct 1027 GCCAATTCCTTCATTTGTTATGAGAT-AAAGAAATTTTTCACAATATCAGACAAAACACA 1085
Query 1074 GAATAC 1079
||||||
Sbjct 1086 GAATAC 1091
> AT4G17550.1 | Symbols: | Major facilitator superfamily protein
| chr4:9777648-9779738 REVERSE LENGTH=1925
Length=1925
Score = 276 bits (149), Expect = 4e-73
Identities = 173/184 (94%), Gaps = 3/184 (2%)
Strand=Plus/Minus
Query 898 CAAAGTTTCACCCGAAAAACTCAAATTAGTTTCCTCTTACAAGTACGAAACACCACCATG 957
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1925 CAAAGTTTCACCCGAAAAACTGAAATTAGTTTCCTCTTACAATTACGAAACACCACCATG 1866
Query 958 CAAAGATTGCTTCGAGTGTCGTAGAAAACAGAGAAGAAATAGAGGAAGAAAGCTGTAAGC 1017
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1865 CAAAGATTGCTTTGAGTGTCGTAGAAAACAGAGAAGAAATAGAGGAAGAAAGCTGTAAGC 1806
Query 1018 CAATTCCTTCATTTGTTATGAGATGaaaaaaaaaT--CACAATATCTGACAAAACATAGA 1075
|||||||||||||||||||||||| ||| ||| | ||||||||| ||||||||| |||
Sbjct 1805 CAATTCCTTCATTTGTTATGAGAT-AAAGAAATTTTTCACAATATCAGACAAAACACAGA 1747
Query 1076 ATAC 1079
||||
Sbjct 1746 ATAC 1743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52861173885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5