BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493124
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17520.1 | Symbols: | Hyaluronan / mRNA binding family | ch... 1851 0.0
> AT4G17520.1 | Symbols: | Hyaluronan / mRNA binding family |
chr4:9771297-9773592 FORWARD LENGTH=1561
Length=1561
Score = 1851 bits (1002), Expect = 0.0
Identities = 1378/1543 (89%), Gaps = 92/1543 (6%)
Strand=Plus/Plus
Query 1 TTGGCGTCTAAAC-AACGCTGTCTGAATCATATCTTCGATTCTGATTCTGATTTTTCTTC 59
||||| ||| ||| |||||||||||||||||| | ||| |||||||||||||||||
Sbjct 43 TTGGCTTCT-AACAAACGCTGTCTGAATCATA---T---TTC-GATTCTGATTTTTCTTC 94
Query 60 ATGGATTCGTATAGCCAATAAGGTTTTTCAATCTTCAAAACAAAAACCCAATCAAAATAA 119
|||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||
Sbjct 95 ATGGATTCGTATAGCCAATAAGTTTTTTCAATATTCAAAACAAAAACCCCATCAAAATAA 154
Query 120 TCT-CGTGACCAGTTTCTCTTTCGATTCAGTCGGACCGGaaaaa-aaTGGCGTCTTTGAA 177
||| || ||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 155 TCTCCG-GACCAGTTTCTCTTTCGATTCAGTCGGACCGGAAAAACAATGGCGTCTGTGAA 213
Query 178 CCCTTTCGATCTCTTGGACGATGACGCAGAGGATCCCAGCCAGATTGTTGCTG-CTAAGC 236
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 214 CCCTTTCGATCTCTTGGACGATGACGCAGAGGATCCCAGCCAGATTGTTGC-GTCTAAGC 272
Query 237 CATTGAAGGTTGCT-GTTCCGGTTCAGCCGGCCAAGTCTGGTAAGATGCCGACTAAGCCG 295
|||||||||||| | | |||||||||| | || |||||||||||||||||||||||||||
Sbjct 273 CATTGAAGGTTG-TGGCTCCGGTTCAGACTGCTAAGTCTGGTAAGATGCCGACTAAGCCG 331
Query 296 CCTCCTCCTGCTCAAGCCGTGAGGGAGGCCAGGAACGCTCCTGTtggaggtcttggtggt 355
||||||||| ||||||| ||||||||||| ||||||||||||| |||||||| ||||| |
Sbjct 332 CCTCCTCCTTCTCAAGCTGTGAGGGAGGCAAGGAACGCTCCTGGTGGAGGTCGTGGTGCT 391
Query 356 ggacgtggagggggttatggtcgtggtggacgtggtggtTACAACAGGGATTCAAGGAAC 415
|||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 392 GGACGTGGAGGGAGTTATGGTCGTGGTGGACGTGGTGGAAACAATAGGGATTCAAGGAAC 451
Query 416 AATGATGCTCCTCCGGCCAATGAAAACGGATATGGTGGAGGCTACAGACGCTCAGAAGAA 475
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 AATGATGGTCCT---GCCAATGAAAACGGATATGGTGGAGGCTACAGACGCTCAGAAGAA 508
Query 476 GGAGATGGAGCGAGACGTGGTGGGCCTGTTGGTGGTTACCGTGGTGGTGATCGCCGTGGA 535
||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 509 GGAGATGGAGCTAGACGTGGTGGGCCTGTTGGTGGATACC---GTGGTGATCGCCGTGGA 565
Query 536 GGCTACAGCAA---TGGTGATTCTGGTGACTTTGAACGACCACGCAAGAACTATGAGCGT 592
|||||||||| ||||||||| ||||||| |||| ||||||||||||||||||| |||
Sbjct 566 AGCTACAGCAATGGTGGTGATTCAGGTGACTCTGAAAGACCACGCAAGAACTATGACCGT 625
Query 593 CACAGTAGAACAGC-TCACGGAAATGAGGTTAAACGTGATGGAGCTGGCCGTGGC-AACT 650
|||||||||||||| | |||| ||||||| |||||||||||||||||||||| || || |
Sbjct 626 CACAGTAGAACAGCGT-ACGGGAATGAGGATAAACGTGATGGAGCTGGCCGT-GCGAATT 683
Query 651 GGGGAACCACTCAGGATGATATTGCTCCAGTGACTGAAGAATCCACAGCTGTTGTGGACA 710
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 684 GGGGAACCACTCAGGATGATATTACTCCGGTGACTGAAGAATCCACAGCTGTTGTGGACA 743
Query 711 AGAATTTGACTGTTGAGAAGCAAGGTGGTGAAGGTGAAGCAACTGATGCAAACAAAGAGA 770
|||||||||||||||||||||||| ||||||||||||||||||||||||||| || || |
Sbjct 744 AGAATTTGACTGTTGAGAAGCAAGATGGTGAAGGTGAAGCAACTGATGCAAAGAATGAAA 803
Query 771 CACCTACTGAAGTGCAAGCAGAGGAAAAGCCTGAGGACAAGGAGATGACTTTGGAAGAGT 830
||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 CACCTGCTG-A--GAAAGCAGAGGAAAAGCCTGAGGACAAGGAGATGACTTTGGAAGAGT 860
Query 831 ATGAGAAGGTTTTGGAGGAGAAGAAGAAAGCTTTGCAGGCGACCAAGGTTGAGGAGAGGA 890
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 861 ATGAGAAGGTTTTGGAGGAGAAGAAGAAAGCTCTGCAGGCGACCAAGGTTGAGGAAAGGA 920
Query 891 AGGTTGACACTAAAGCATTTGAAGCCATGCAACAGCTCTCAAGCAAAAAGAGCAACAACG 950
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 921 AGGTTGACACTAAAGCATTTGAGGCCATGCAACAGCTCTCAAGCAAAAAGAGCAACAACG 980
Query 951 ATGAAGTCTTCATCAAACTGGGAACAGAGAAGGACAAGCGTGTTACTGAGAGAGAAGAGA 1010
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 981 ATGAAGTCTTCATCAAACTGGGAACAGAGAAGGACAAGCGCATTACTGAGAGAGAAGAGA 1040
Query 1011 AGACAAGGAAGTCATTGAGCATCAATGAGTTTCTGAAACCTGCGGATGGAAAGA---ACT 1067
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1041 AGACAAGGAAGTCATTGAGCATCAATGAGTTTCTGAAACCTGCGGATGGAAAGAGTTACT 1100
Query 1068 ACAGACCAAgaggtggaagggaaggaagggatggacgtggaccaagaggagaaggaaacc 1127
|||||||||||||||| | |||| |||| | ||| | || | | | | ||
Sbjct 1101 ACAGACCAAGAGGTGGTT---ACC-AAGG--TGGAAG-GGA--AGGACGTG--G-A--CC 1146
Query 1128 agaaggacggaggaggaaACCAGAAGGACGGAGGTAGAAACCCAAGGGAAGGCGGGAGAA 1187
| | | | | | ||||||||||| |||||| || ||||||| |||||||| |||||||
Sbjct 1147 A-A-G-A-G-A--AGGAAACCAGAGGGACGGTGGAAGAAACCTGAGGGAAGGAGGGAGAA 1199
Query 1188 ACCAGAGGGACGGAGGAGCAGCTGCACGGGCACCAGCACCTGCACCGGCACCGGCCATTG 1247
||||||||||||||||||| |||| | ||| || ||||| ||||||||||||
Sbjct 1200 ACCAGAGGGACGGAGGAGC---TGCA-G--CAC-AG-----GCACCAACACCGGCCATTG 1247
Query 1248 GGGACACTGCACAGTTCCCTACTTTGGGTAAGTAAGGCAGGATCTCGGGTTTGTTCCTTC 1307
|||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||
Sbjct 1248 GGGACAGTGCACAGTTCCCTACTTTGGGTAAGTAAGGCAATCTCTCCGGTTTGGTCCTTC 1307
Query 1308 AGCTTCTGTCTGGAGTCTGGACTCTTTTGTCTCTGTAATATCTCTCTGTCGGTTTGGATT 1367
|||||||||||||| || | | || |||||||||||||| || |||||||||||
Sbjct 1308 AGCTTCTGTCTGGACTC-G---T-TT----CTCTGTAATATCTCACT--CGGTTTGGATT 1356
Query 1368 TTGTTCTTCTG---CTATTTTTATTGTTATACTCTTCCCTTTAGAGAGCTGGAGtttttt 1424
||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1357 TTGTTCTTCTGATTCTATTTTTATTGTTATACTCTTCCCTTTAGAGAGCTGAAGGTTTTT 1416
Query 1425 tGTTTTACGAACCCAATTTTGGGAGTTTTAAAGTTCAATGAGGCaaaaaaaTCAACCATT 1484
|||||| |||||||||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct 1417 TGTTTTGCGAACCCAATTTTGGGAGTTTTAA-GTTAAATGAGGCCAAAAAATCAACCATT 1475
Query 1485 CTCCATTTTTCGTCTGTAATATTTAGGTTTCAATTTTATTTAG 1527
|||| |||| || ||| | | ||||||||||| |||||||
Sbjct 1476 CTCC-TTTT--GT-TGT--T-T--AGGTTTCAATTATATTTAG 1509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75351018045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5