BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493125
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17510.1 | Symbols: UCH3 | ubiquitin C-terminal hydrolase 3 ... 1411 0.0
AT4G17512.1 | Symbols: | Pseudogene of AT4G17510; UCH3; ubiqui... 405 4e-112
> AT4G17510.1 | Symbols: UCH3 | ubiquitin C-terminal hydrolase
3 | chr4:9766971-9768770 REVERSE LENGTH=970
Length=970
Score = 1411 bits (764), Expect = 0.0
Identities = 899/963 (93%), Gaps = 13/963 (1%)
Strand=Plus/Plus
Query 1 TCGGATTTTGAGGGATTCGTATCTTGGAGCCGAA--G-TGTTTTCTTATAGAAAGATCAA 57
|||||| ||||||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct 16 TCGGATGTTGAGGGATTCGTATCTTGGAGCCGAAGTGTTGTTTTCTTATAGAAGGAT--- 72
Query 58 AGATTGATTTCTTCTGCAAAATTCGATCGAAAGTGACGAAGAAAGATCCGAAGATGGCGA 117
||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||
Sbjct 73 --TTTGATTTCTTCTGCAAAATTCGATCGATAGTGACG-AGAAAGATCCTAAGATGGCGA 129
Query 118 CCGCAAGCGAGAGTTCTTCAGCTAAGAGATGGCTTCCACTTGAATCTAACCCAGATGTGA 177
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 130 CCGCAAGCGAGAGTTCTTCATCTAAGAGATGGCTTCCACTTGAATCTAACCCAGATGTTA 189
Query 178 TGAATCAGTATCTTTGGGGACTTGGTCTTGCCCCTGATGCAGCAGAGTGCAATGATGTGT 237
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 190 TGAATCAGTATCTCTGGGGACTTGGTCTTGCCCCTGATGAAGCAGAGTGCAATGATGTGT 249
Query 238 TTGGGTTAGACGACGAACTTCTAGAGATGGTTCCAAAGCCTGTTCTTGCTGTTCTCTTCC 297
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 ATGGGTTAGACGATGAACTTCTAGAGATGGTTCCAAAGCCTGTTCTTGCTGTTCTCTTCC 309
Query 298 TTTACCCCATCACCACAAAGAGTGAAGAAGAGAGAATCGAGCAAGACAAGGAAATCAAGG 357
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 310 TTTACCCAATCACCAAAAAGAGTGAAGAAGAGAGAATCGAGCAAGACAAGGAAATTAAGG 369
Query 358 AAAAGGTGCATAGTGATAAAGTTTACTTCATGAAACAAACTGTTGGTAATGCTTGTGGAA 417
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 370 AAAAGGTGCATAGCGATAAAGTTTACTTTATGAAACAAACTGTTGGTAATGCTTGTGGAA 429
Query 418 CCATTGGCCTTCTTCATGCTATTGGGAATATAACCTCTGAAATCAAACTCTCCGAGGGAT 477
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 430 CCATTGGTCTTCTTCATGCTATTGGGAATATTACCTCTGAAATCAAACTCTCCGACGGAT 489
Query 478 CGTTCTTGGATAGATTCTTCAAATCCACTGCCAACATGACTCCCATGGAGCGTGCAAAGT 537
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 490 CGTTCTTGGATAGATTCTTCAAATCCACTGCCAACATGACTCCTATGGAGCGTGCCAAGT 549
Query 538 ATCTTGAGAATGACAGTCAAATAGAAGATGCTCATTCTGTAGCTGTT-TCAGCGGGTGAT 596
||| |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 550 TTCTCGAGAATGACAGTCAAATAGAAGATGCTCATTCTGTAGCTGTTAT-AGCTGGTGAT 608
Query 597 ACAGCTGCTTCAGACGATGCGGTCACGCATTTCATCTGTTTAGCTTGTGTAGAAGGTGAG 656
||| |||||||||| || || | |||||||||||| ||||||||||||||||||||||||
Sbjct 609 ACACCTGCTTCAGAAGACGCAGACACGCATTTCATTTGTTTAGCTTGTGTAGAAGGTGAG 668
Query 657 CTCTATGAACTTGATGGAAGAAAGGCAGGACCGATTTCACACGGTGCTTCCTCTCCAGCT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CTCTATGAACTTGATGGAAGAAAGGCAGGACCGATTTCACACGGTGCTTCCTCTCCAGCT 728
Query 717 ACCCTCTTGAAGGACGCAACGATAGTGATAAAGAAGATGATTGAGAAGAACCCGGATTCT 776
|||||| ||||||||||||| | |||||||||||||||||| |||||||| |||| |||
Sbjct 729 ACCCTCCTGAAGGACGCAACAAAAGTGATAAAGAAGATGATCGAGAAGAATCCGGGCTCT 788
Query 777 CTGAACTTCAATCTGATAGCCATCTCTAAGAGAACGTGAGGCTCTTCTTAGA-AAGCGAA 835
|| |||||||| ||||||||||||||||||||||| ||||| |||| ||| | || ||||
Sbjct 789 CTCAACTTCAACCTGATAGCCATCTCTAAGAGAACCTGAGGGTCTT-TTAAATAACCGAA 847
Query 836 GCTCCTAAGTCTTGTTTCTGAGTTTGTGACTATTTTATATCTTCGGATTCTGCTTTTCTA 895
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
Sbjct 848 ACTCCTAAGTCTTGTTTTTGAGTTTGTGACTATTTTATATCTTCGGATTCTGTTTTTCAA 907
Query 896 TGTTCTGAACAAATCGCAGTTGATGATCATGGTTTAGAGAATGCATTTCTAGATGAGTAA 955
|||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 908 TGTTCTGAACAAATTACAGTTGATGATCATGGTTTAGAGAATGCATTCCTAGATCAGTAA 967
Query 956 CAC 958
|||
Sbjct 968 CAC 970
> AT4G17512.1 | Symbols: | Pseudogene of AT4G17510; UCH3; ubiquitin
thiolesterase | chr4:9769477-9770200 REVERSE LENGTH=369
Length=369
Score = 405 bits (219), Expect = 4e-112
Identities = 321/368 (87%), Gaps = 16/368 (4%)
Strand=Plus/Plus
Query 363 GTGCATAGTGATAAAGTTTACTTCATGAAACAAACTGTTGG-TAATGCTTGTGGAACCAT 421
|||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||
Sbjct 1 GTGCATAGTGATAAAGTTTACTTCATGAAACAAAATG-TGGATAATGCTTGTGGAACCAT 59
Query 422 TGGCCTTCTTCATGCTATTGGGAATATAACCTCTGAAATCAAACTCTCCGAGGGATCGTT 481
|||||||||||||||||||| ||||||||||| ||| ||||||||| | ||||| |||||
Sbjct 60 TGGCCTTCTTCATGCTATTGAGAATATAACCTTTGAGATCAAACTCGCTGAGGGGTCGTT 119
Query 482 CTTGGATAGATTCTTCAAATCCACTGCCAACATGACTCCCATGGAGCGTGCAAAGTATCT 541
| || ||||||||||||||||||||||||| |||||||| || ||||| |||| || |||
Sbjct 120 CCTGAATAGATTCTTCAAATCCACTGCCAATATGACTCCTATAGAGCGAGCAAGGTTTCT 179
Query 542 TGAGAATGACAGTCAAATAGAAGAT----GCTCATTCTGTAGCTGTT-TCAGCGGGTGAT 596
||||| |||||||||||||||||| ||||||||| ||||| || | ||| ||||||
Sbjct 180 TGAGAGCGACAGTCAAATAGAAGATATATGCTCATTCTTTAGCTATTAT-AGCTGGTGAT 238
Query 597 ACAGCTGCTTCAGACGATGCGGTCACGCATTTCATCTGTTTAGCTTGTGTAGAAGGT--- 653
||| | | ||||||| | | || |||||||||||| ||||||||||||||||| |||
Sbjct 239 ACAACGG-TTCAGACTAGGTGGACACGCATTTCATTTGTTTAGCTTGTGTAGATGGTAAA 297
Query 654 GAGCTCTATGAACTTGATGGAAGAAAGG-CAGGACC-GATTTCACACGGTGCTTCCTCTC 711
||||||||||||||||||||| || ||| ||||||| | ||||||| ||| |||||||||
Sbjct 298 GAGCTCTATGAACTTGATGGA-GATAGGGCAGGACCAG-TTTCACATGGTACTTCCTCTC 355
Query 712 CAGCTACC 719
||||||||
Sbjct 356 CAGCTACC 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46868459151
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5