BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493126
Length=998
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17500.1 | Symbols: ATERF-1, ERF-1 | ethylene responsive ele... 1421 0.0
AT5G47220.1 | Symbols: ATERF2, ATERF-2, ERF2 | ethylene respons... 315 7e-85
AT1G49120.1 | Symbols: | Integrase-type DNA-binding superfamil... 62.1 1e-08
> AT4G17500.1 | Symbols: ATERF-1, ERF-1 | ethylene responsive element
binding factor 1 | chr4:9759325-9760340 FORWARD LENGTH=1016
Length=1016
Score = 1421 bits (769), Expect = 0.0
Identities = 940/1019 (92%), Gaps = 25/1019 (2%)
Strand=Plus/Plus
Query 1 ATTCACACCAGACATTTTGAAATCTCAAGAAGAACCAAACCAAACaaaaaaaaaaCATTC 60
||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1 ATTCACACCGGACATTTTGAAATCTCAACAAGAACCAAACCAAACAACAAAAAAACATTC 60
Query 61 TTAATAAATATCTCTCTGTTATGTCGATGACGGCGGAATCTCAATCCGACTT-CGCTTTT 119
||||||| ||||| ||||||||||||||||||||||| |||||||| || || ||||||
Sbjct 61 TTAATAATTATCTTTCTGTTATGTCGATGACGGCGGATTCTCAATCTGA-TTATGCTTTT 119
Query 120 CTTGAGTCCATAAGGCGACACTTACTAGGAGAATCGGAGGCGCGACTCAGTGAGTCGATA 179
|||||||||||| | |||||||||||||||||||||||| || |||||||||||||| |
Sbjct 120 CTTGAGTCCATACGACGACACTTACTAGGAGAATCGGAGCCGATACTCAGTGAGTCGACA 179
Query 180 ACGAGTTCGGTGGCGCAATCTTGTACAACAGGTAATAGCGTTAAACCGGTGTACGGACGA 239
|||||||||| | ||||||||| ||| ||| | ||| ||||||||||||||||||||
Sbjct 180 GCGAGTTCGGTTACTCAATCTTGTGTAACCGGTCAGAGCATTAAACCGGTGTACGGACGA 239
Query 240 AACCCTAGCTTCAGCAAGTTGTATCCTTGCTTCACCGAGAGCTGGGGAGATTTGCCGTTG 299
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AACCCTAGCTTTAGCAAACTGTATCCTTGCTTCACCGAGAGCTGGGGAGATTTGCCGTTG 299
Query 300 AAAGAAAACGATTCTGAGGATATGTTAGTTTACGGTATCCTCAACGACGCTTTTCACGGC 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 AAAGAAAACGATTCTGAGGATATGTTAGTTTACGGTATCCTCAACGACGCCTTTCACGGC 359
Query 360 GGTTGGGAACCGTCTTCTTCATCTTCTGACGAAGATCGTAGCTTTTTTCCG-GTGGTTAA 418
|||||||| ||||||||||| ||||| |||||||||||||||| ||| ||| || |||||
Sbjct 360 GGTTGGGAGCCGTCTTCTTCGTCTTCCGACGAAGATCGTAGCTCTTTCCCGAGT-GTTAA 418
Query 419 GATTGAGACTCCTGAGATTTTCGCGGCGGTGGATTCTGTTCCGGTGAAGAAGGAGACGAC 478
||| |||||||| |||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct 419 GATCGAGACTCCGGAGAGTTTCGCGGCGGTGGATTCTGTTCCGGTCAAGAAGGAGAAGAC 478
Query 479 GAGTCC-GGTT---C--C-G-G-CGGC--C-AAGGGAAAGCATTATAGAGGAGTGAGACA 526
|||||| | || | | | | |||| | |||||||||||||||||||||||||||||
Sbjct 479 GAGTCCTGTTTCGGCGGCGGTGACGGCGGCGAAGGGAAAGCATTATAGAGGAGTGAGACA 538
Query 527 AAGGCCGTGGGGGAAATTTGCGGCGGAGATTAGAGATCCGGCGAAGAACGGAGCTAGGGT 586
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 539 AAGGCCGTGGGGGAAATTTGCGGCGGAGATTAGAGACCCGGCGAAGAACGGAGCTAGGGT 598
Query 587 TTGGTTAGGGACGTTTGAGACGGCGGAGGACGCGGCGTTGGCTTACGACAGAGCTGCTTT 646
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTGGTTAGGAACGTTTGAGACGGCGGAGGACGCGGCGTTGGCTTACGACAGAGCTGCTTT 658
Query 647 CAGGATGCGTGGTTCCCGCGCTTTGTTGAATTTTCCGTTGAGAGTTAATTCAGGAGAACC 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CAGGATGCGTGGTTCCCGCGCTTTGTTGAATTTTCCGTTGAGAGTTAATTCAGGAGAACC 718
Query 707 CGACCCGGTTCGGATCAAGTCCAAGAGAtcttcttcttcttcttcttcCGAAAACGGAGC 766
|||||||||||| |||||||||||||||||||||| |||||||||| ||| ||||||||
Sbjct 719 CGACCCGGTTCGAATCAAGTCCAAGAGATCTTCTTTTTCTTCTTCTAACGAGAACGGAGC 778
Query 767 TCCGAAGAAGAGGAGAATGGTGGCCGCCGGTGGTGGGACGGATAAGGGATTGACGGTGAA 826
||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||
Sbjct 779 TCCGAAGAAGAGGAGAACGGTGGCCGCCGGTGGTGGAATGGATAAGGGATTGACGGTGAA 838
Query 827 GTGCGAGGTTGTTGAAGTGACACGTGGCGATCATTTATTGGTTTTATAATTTTGATTTTT 886
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 839 GTGCGAGGTTGTTGAAGTGGCACGTGGCGATCGTTTATTGGTTTTATAATTTTGATTTTT 898
Query 887 CTTTGTTGGAT--T-AT--GATTCTTCAAAAAAGGAAGAACGTTAATAAGAAA-TTCGTT 940
||||||||||| | || ||||||||||||||| |||||||||||||| ||| ||||||
Sbjct 899 CTTTGTTGGATGATTATATGATTCTTCAAAAAAG-AAGAACGTTAATAAAAAAATTCGTT 957
Query 941 TATTATTATATTTAAC-TTCCTAATCATTCCATTTAGTAGTGGGATCAAACTTTTTTCT 998
|||||||||||||||| |||| |||||||||||||| |||||| |||||||||||||||
Sbjct 958 TATTATTATATTTAACCTTCC-AATCATTCCATTTATTAGTGGAATCAAACTTTTTTCT 1015
> AT5G47220.1 | Symbols: ATERF2, ATERF-2, ERF2 | ethylene responsive
element binding factor 2 | chr5:19171862-19172823 REVERSE
LENGTH=962
Length=962
Score = 315 bits (170), Expect = 7e-85
Identities = 217/240 (90%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 504 AAGCATTATAGAGGAGTGAGACAAAGGCCGTGGGGGAAATTTGCGGCGGAGATTA-GAGA 562
|||||||| ||||||||||| || || |||||||||||||| |||||||||| || | ||
Sbjct 412 AAGCATTACAGAGGAGTGAGGCAGAGACCGTGGGGGAAATTCGCGGCGGAGA-TACGTGA 470
Query 563 TCCGGCGAAGAACGGAGCTAGGGTTTGGTTAGGGACGTTTGAGACGGCGGAGGACGCGGC 622
|||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 471 TCCGGCGAAGAATGGAGCTAGGGTTTGGTTAGGGACGTTTGAGACGGCGGAAGATGCGGC 530
Query 623 GTTGGCTTACGACAGAGCTGCTTTCAGGATGCGTGGTTCCCGCGCTTTGTTGAATTTTCC 682
|| |||||||| | ||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 531 TTTAGCTTACGATATAGCTGCTTTTAGGATGCGTGGTTCCCGCGCTTTATTGAATTTTCC 590
Query 683 GTTGAGAGTTAATTCAGGAGAACCCGACCCGGTTCGGATCAAGTCCAAGAGAtcttcttc 742
|||||| |||||||| || ||||| |||||||||||||||| ||| ||||||||||||||
Sbjct 591 GTTGAGGGTTAATTCCGGTGAACCTGACCCGGTTCGGATCACGTCTAAGAGATCTTCTTC 650
> AT1G49120.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:18173427-18174416 FORWARD LENGTH=990
Length=990
Score = 62.1 bits (33), Expect = 1e-08
Identities = 37/39 (95%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 528 AGGCCGTGGGGGAAATTTGCGGCGGAGATTAGAGATCCG 566
||||||||||||||||||||||||||||| ||| |||||
Sbjct 277 AGGCCGTGGGGGAAATTTGCGGCGGAGATAAGAAATCCG 315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48877825031
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5