BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493127
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17490.1 | Symbols: ATERF6, ERF-6-6, ERF6 | ethylene respons... 1254 0.0
AT5G47230.1 | Symbols: ERF5, ATERF-5, ATERF5 | ethylene respons... 331 7e-90
AT2G44840.1 | Symbols: ATERF13, EREBP, ERF13 | ethylene-respons... 122 4e-27
> AT4G17490.1 | Symbols: ATERF6, ERF-6-6, ERF6 | ethylene responsive
element binding factor 6 | chr4:9752824-9753867 REVERSE
LENGTH=1044
Length=1044
Score = 1254 bits (679), Expect = 0.0
Identities = 866/948 (91%), Gaps = 46/948 (5%)
Strand=Plus/Plus
Query 1 ATGGCAACACCAAACGAAGTATCAGCTCTTTTCCTCATCAAGAAGTATCTTCTCGACGAA 60
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 47 ATGGCTACACCAAACGAAGTATCAGCTCTTTTCCTCATCAAGAAGTATCTCCTCGACGAA 106
Query 61 TTGTCTCCGTTG-C--CTACTGCCACCACCAATCCATGGATGAACGATTTCACGTCATTT 117
|||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 107 TTGTCTCCGTTGCCTACTACTGCCACCACCAATCGATGGATGAACGATTTCACGTCATTT 166
Query 118 GATCAAACCGGTTTCGAGTTTTCTGAATTTGAAATTAAACCGGAAATAATCGATCTCGTC 177
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 167 GATCAAACCGGTTTCGAGTTTTCTGAATTTGAAACCAAACCGGAAATAATCGATCTCGTC 226
Query 178 ACACCCAAACCGGAGATTTCTGATTTCGAGCTCAAACCTATAATTGATTCACAAATGAAA 237
|| ||||||||||||| | | ||| | | | | | || | |||||
Sbjct 227 ACTCCCAAACCGGAGA--T-T--TTT---G-----A--T-T--TCGA-T-----GTGAAA 262
Query 238 TCTGAAATTCCACT-TGAATCGAACGATTCCTTCACGTTCCAATCGAATCCTGCTCGCGT 296
|||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 263 TCTGAAATTCCA-TCTGAATCGAACGATTCCTTCACGTTCCAATCGAATCCTCCTCGCGT 321
Query 297 TATTGTTAAATCCAATCGGAAACCGCCGTTGAAGATCGCGCCACCGAACCGAACTAAGTG 356
|| |||| |||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 322 TACTGTTCAATCCAATCGAAAACCGCCGTTGAAGATCGCACCACCGAACCGAACCAAGTG 381
Query 357 GATTCAATTCGCAACCGGAAATCCTAAACCGGAACTTCCCGTACCGGTTGTAGCAGCAGA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 GATTCAATTCGCAACCGGAAATCCTAAACCGGAACTTCCCGTACCGGTTGTAGCAGCAGA 441
Query 417 AGAGAAGAGGCATTACAGAGGAGTGAGAATGAGGCCGTGGGGGAAATTCGCGGCGGAGAT 476
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 442 GGAGAAGAGGCATTACAGAGGAGTGAGGATGAGGCCGTGGGGGAAATTCGCGGCGGAGAT 501
Query 477 TCGAGATCCGAAC-CGTCGTGGAACTAGAGTTTGGCTCGGGACGTTTGAGACGGCGATCG 535
|||||| |||| | |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 502 TCGAGACCCGA-CTCGTCGTGGAACTCGTGTTTGGCTCGGGACGTTTGAGACGGCGATCG 560
Query 536 AAGCGGCTAGAGCTTACGACAAAGCAGCGTTTAGACTCCGAGGATCAAAAGCGATTCTGA 595
|||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct 561 AAGCGGCTAGAGCTTACGACAAAGAAGCGTTTAGACTACGAGGATCAAAGGCGATTCTGA 620
Query 596 ATTTCCCGCTTGAAGTTGGCAAGTGGAATCCACGCGCTGAAGATGGTCATGGCCTGAACA 655
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||
Sbjct 621 ATTTCCCGCTTGAAGTTGACAAGTGGAATCCACGCGCTGAAGATGGTCGTGGCCTGTACA 680
Query 656 ACAAACGGAAGAGAGACGGCGAGGGGGAGGAAGTGACGGTGGT-GAAGAAGGTACCAAAG 714
|||||||||||||||||||||||| |||||||||||||||||| || ||| || | ||||
Sbjct 681 ACAAACGGAAGAGAGACGGCGAGGAGGAGGAAGTGACGGTGGTTGA-GAAAGTGCTAAAG 739
Query 715 ACGGAGGAGAGTTACGCCGTTAGCGGCGGCGAGAATGTTGAGTCGGCGACGTCAGGTTTG 774
|||||||||||||||| ||||||||||||||||||||||||||| | | | ||||
Sbjct 740 ACGGAGGAGAGTTACGACGTTAGCGGCGGCGAGAATGTTGAGTC----A-G---G-TTTG 790
Query 775 ACGGCGTTTGATGACTGGGACATGACGGAGTTTCTGAGCATGCCGCTTTTATCGCCGTTA 834
|||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 791 ACGGCGATAGATGACTGGGATTTGACGGAGTTTCTGAGCATGCCGCTTTTATCGCCGTTA 850
Query 835 TCTCCACACCCACCGTTTGGTCATCCACAATTGACCGTTGTTTGAATTTTATGTTTTCTG 894
||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||
Sbjct 851 TCTCCACACCCACCGTTTGGTTATCCACAATTGACCGTTGTTTGAATTCTAT-TTTTCTG 909
Query 895 TT-GGGTCAGCTTGTTGTATGCTGACGTGGAATTATGGC-ATATCTTT 940
|| |||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 910 TTTGGGTCAGCTTGTTGTATGCTGACGTGGAATTATG-CTATATCTTT 956
> AT5G47230.1 | Symbols: ERF5, ATERF-5, ATERF5 | ethylene responsive
element binding factor 5 | chr5:19179939-19181129 FORWARD
LENGTH=1191
Length=1191
Score = 331 bits (179), Expect = 7e-90
Identities = 463/594 (78%), Gaps = 44/594 (7%)
Strand=Plus/Plus
Query 302 TTAAATC-C-AA-TCGGAAACCGCCGTTGAAGA--TCGC-GCCACCGAACCGAACTA-AG 354
||||||| | || ||| |||||||| ||||||| |||| ||| | || ||| | ||
Sbjct 471 TTAAATCTCAAATTCGTAAACCGCCATTGAAGATTTCGCTTCCAGCTAA---AAC-AGAG 526
Query 355 TGGATTCAATTCGCAACCGGAAATC-CTAAACCGGAACTTCCCGTACCGGTTGTAGCAGC 413
|||||||||||||| | | |||| | | ||||||||| || | ||||||| | | |
Sbjct 527 TGGATTCAATTCGC-AGCTGAAAACACCAAACCGGAAGTTACTAAACCGGTT-T--CGGA 582
Query 414 AGAAGAGAAGAGGCATTACAGAGGAGTGAGA-ATGAGGCCGTGGGGGAAATTCGCGGCGG 472
||||||||||| ||||||||||||||| ||| | || ||||||||||||||||||||||
Sbjct 583 AGAAGAGAAGAAGCATTACAGAGGAGTAAGACA-AAGACCGTGGGGGAAATTCGCGGCGG 641
Query 473 AGATTCGAGATCCGAACCGTCGTGGAACTAGAGTTTGGCTCGGGACGTTTGAGACGGCGA 532
||||||| || ||||| || ||| || | |||||||| ||||||||||| || ||||
Sbjct 642 AGATTCGTGACCCGAATAAACGCGGATCTCGCGTTTGGCTTGGGACGTTTGATACAGCGA 701
Query 533 TCGAAGCGGCTAGAGCTTACGACAAAGCAGCGTTTAGACTCCGAGGATCAAAAGCGATTC 592
| ||||||||||||||||| ||| |||||||||||||||| |||||||| |||||||||
Sbjct 702 TTGAAGCGGCTAGAGCTTATGACGAAGCAGCGTTTAGACTACGAGGATCGAAAGCGATTT 761
Query 593 TGAATTTCCCGCTTGAAGTTGGCAAGTGGAATCCACGCGCTGAAGATGGTCATGGCCTGA 652
|||||||||| ||||||||||| |||||||| |||||||| || || | || |||
Sbjct 762 TGAATTTCCCTCTTGAAGTTGGGAAGTGGAAACCACGCGCCGATGA-----A-GG--TGA 813
Query 653 ACAACAAACGGAAGAGAGACGGCGAGGGGGAGGAAGTGACGGTGGT-GAAGAAGGTACCA 711
|| |||||||||||||||| || | | | ||||||| ||||| || ||| ||
Sbjct 814 G-AAGAAACGGAAGAGAGACGATGATGAG-A--AAGTGACTGTGGTTGA-GAAAGTGTTG 868
Query 712 AAGACGGAGGAGAG--TTACGCCGTTAGCGGCGGCGAGAATGTTGA-GTCGGCGACGTC- 767
|||||||| |||| || | ||||| ||| || |||| ||| || | |||||
Sbjct 869 AAGACGGAACAGAGCGTT--GACGTTAACGGTGGAGAGAC-GTTTCCGTTTGTAACGTCG 925
Query 768 AGGTTTGACGGCGTT-TGATGACTGGGACATGACGGAGTTTCTGAGCATGCCGCTTTTAT 826
| ||| |||| || || ||||||||| | |||| |||||| | | | |||||| | |
Sbjct 926 AA-TTTAACGGAATTATG-TGACTGGGATTTAACGGGGTTTCTTAACTTTCCGCTTCTGT 983
Query 827 CGCCGTTATCTCCACACCCACCGTTTGGTCAT-CCACAATTGACCGTTGTTTGA 879
||||||||||||| || |||||||||||| || || || |||||||||||||||
Sbjct 984 CGCCGTTATCTCCTCATCCACCGTTTGGTTATTCC-CAGTTGACCGTTGTTTGA 1036
> AT2G44840.1 | Symbols: ATERF13, EREBP, ERF13 | ethylene-responsive
element binding factor 13 | chr2:18495341-18496272 FORWARD
LENGTH=932
Length=932
Score = 122 bits (66), Expect = 4e-27
Identities = 157/199 (79%), Gaps = 14/199 (7%)
Strand=Plus/Plus
Query 412 GCAGAAGAGAAGAGGCATTACAGAGGAGTGAGAATGAGGCCGTGGGGGAAATTCGCGGCG 471
||||||| | || ||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct 357 GCAGAAG-G-GGATGCAGTACAGAGGAGTGAGGAGGAGGCCGTGGGGGAAATTCGCGGCG 414
Query 472 GAGATTCGAGATCCGAACCGTCG--TGGAACTAGAGTTTGGCTCGGGACGTTT-GAGACG 528
|||||| | |||||||| | | ||| |||| |||||||||||||| || ||||||
Sbjct 415 GAGATTAGGGATCCGAA--GAAGAACGGAGCTAGGGTTTGGCTCGGGAC-TTACGAGACG 471
Query 529 GCG-ATCGAAGCGGCTAGAG-CTTACGACAAAGCAGCGTTT-AGACTCCGAGGATCAAAA 585
|| | || ||||| | | | |||||| ||| |||||| || ||| ||||||| |||
Sbjct 472 CCGGAG-GACGCGGCG-GTGGCGTACGACCGAGCGGCGTTTCAG-CTCAGAGGATCGAAA 528
Query 586 GCGATTCTGAATTTCCCGC 604
|| | |||||||| ||||
Sbjct 529 GCTAAGCTGAATTTTCCGC 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45964244505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5