BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493128
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17486.1 | Symbols: | PPPDE putative thiol peptidase family... 1293 0.0
AT5G47310.1 | Symbols: | PPPDE putative thiol peptidase family... 523 1e-147
> AT4G17486.1 | Symbols: | PPPDE putative thiol peptidase family
protein | chr4:9749728-9751709 REVERSE LENGTH=1084
Length=1084
Score = 1293 bits (700), Expect = 0.0
Identities = 768/801 (96%), Gaps = 3/801 (0%)
Strand=Plus/Plus
Query 1 CGATCATTTTTGCAGTGTCTCTTACAAACCAATCCC-TTCTTCTCAGTTTTTTAGTGTTG 59
|||||||||||||||| |||| | | |||||||||| |||| ||| | | | | |||||
Sbjct 26 CGATCATTTTTGCAGTCTCTC-TCCCAACCAATCCCATTCTGCTC-GACTCTCATTGTTG 83
Query 60 CAGAGGTTTAGGAAGAAAGGAATGATTCGATCGTGACTTTGAATTGGGATTTTGTGTGTA 119
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 84 CAGAGGTTTAGGAAGAAAGGAATGGTTCGATCGTGACTTTGAATTGGGATATTGTGTGTA 143
Query 120 AAATGTGGGTGCCTACATTGAGCTCAAGCTCATCTTCAAGTGATGAGAGGGAAGAGAGCA 179
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 144 AAATGTGGGTGCCTACATTGAGCTCAAGCTCATGTTCAAGTGATGAGAGGGATGAGAGCA 203
Query 180 GTGGAGAAGCCGGGCTTACGCCGGTTTATCTCAATGTCTATGATCTAACGCCTGTCAACA 239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 GTGGAGAAGCCGCGCTTACGCCGGTTTATCTCAATGTCTATGATCTAACGCCTGTCAACA 263
Query 240 ATTACCTTTATTGGTTTGGGATTGGCATATTCCATTCTGGAATTGAGGCTCATAATTTGG 299
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 264 ATTACCTTTATTGGTTTGGGATTGGCATTTTCCATTCTGGTATTGAGGCTCATAATTTGG 323
Query 300 AATATTGCTATGGAGCTCACGAGTATCCAACAAGTGGGGTATATGAGGTGGAACCTAGGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 AATATTGCTATGGAGCTCACGAGTATCCAACAAGTGGGGTATATGAGGTGGAACCTAGGA 383
Query 360 GCTGTCCAGGTTTCATCTTTAGACGGTCGGTTTTATTGGGAACTACCAGCATGTCTCGTT 419
||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 384 ACTGTCCAGGGTTCATCTTTAGACGGTCGGTTTTACTGGGAACTACCAGCATGTCCCGTT 443
Query 420 CAGATTTCCGCTCATACATGGAGAAGCTTTCAAGAAAATACCATGGTGACACTTACCATT 479
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 444 CAGATTTCCGCTCATACATGGAGAAGCTTTCAAGAAAGTACCATGGTGACACTTACCATT 503
Query 480 TGATTGCCAAGAACTGTAACCATTTTACTGAAGAAGTATGCTTGCAGCTTACAGGAAAGC 539
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 504 TGATTGCCAAGAACTGTAACCATTTCACTGAAGAAGTATGCTTGCAGCTAACAGGAAAGC 563
Query 540 CTATTCCAGGATGGATTAATCGGCTAGCCCGTGTAGGTTCGTTCTGTAATTGTCTTCTGC 599
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 564 CTATTCCAGGATGGATTAATCGGCTGGCCCGAGTAGGTTCCTTCTGTAATTGTCTTCTGC 623
Query 600 CAGAAAGCATTCAGCTTACAGCTGTTAGTGTTCTTCCCGAACGCCTTGAATTCTCCGATG 659
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 624 CAGAAAGCATTCAGCTTACAGCTGTTAGTGCTCTTCCCGAACGCCTTGAATTCTCCGATG 683
Query 660 AGGAGGAATCAAACTCAGAGGCATCTTCTGTGTCGGATGAAGAAGGATCAGAGCAGCATC 719
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 684 AGGATGAATCAAACTCAGAGGCATCTTCTGTGTCAGATGAAGAAGGATCAGAGCAGCATC 743
Query 720 TCATAAATGCAGCAGACAGAGAGATTGTGTATCTACAAAACAAACCAGTGCGACTTACCA 779
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 TCATAAATGTAGCAGACAGAGAGATTGTGTATCTACAAAACAAACCAGTGCGACTTACCA 803
Query 780 GAGAGGAGATCCCCTGAGAAA 800
|||||||||||||||||||||
Sbjct 804 GAGAGGAGATCCCCTGAGAAA 824
Score = 289 bits (156), Expect = 4e-77
Identities = 185/198 (93%), Gaps = 6/198 (3%)
Strand=Plus/Plus
Query 827 AGTGT-GTGTGCCCATGGAAGCTGAAAGGGAGTAAG-T-GATATCTCCTTTTGTCACCTT 883
||||| |||||||||||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 887 AGTGTGGTGTGCCCATGGAAGCTGAAAGGGAGTAAGTTATATATCTCGTTTTGTCACCTT 946
Query 884 AATGCTGCGTTTCTTCTGTCGGAAATTCGATTTGGTATTCTTCTCATCATTTTAGGAATG 943
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 AGTGCTGCGTTGGTTCTGTCGGAAATTCGATTTGGTATTCTTCTCATCATTTTAGGAATG 1006
Query 944 TAAAAACGGATTCC-GGATTTATTTTAATCAGACCAACC-TTTGGCAGTAAAAATCTGAA 1001
|||||||||||||| ||||| ||||||||||||| |||| ||||||||||||||||| ||
Sbjct 1007 TAAAAACGGATTCCCGGATTCATTTTAATCAGAC-AACCCTTTGGCAGTAAAAATCTAAA 1065
Query 1002 GATTTCTCCATATTTTCC 1019
||||||||||||||||||
Sbjct 1066 GATTTCTCCATATTTTCC 1083
> AT5G47310.1 | Symbols: | PPPDE putative thiol peptidase family
protein | chr5:19200782-19202921 FORWARD LENGTH=1167
Length=1167
Score = 523 bits (283), Expect = 1e-147
Identities = 559/688 (81%), Gaps = 36/688 (5%)
Strand=Plus/Plus
Query 115 GTGTAAAATGTGGGTGCCTACATTGAGCTCAAGCTCAT-CTTCAAGTGATGA-GAGG--G 170
|||||||||| |||||| | ||||||||||||| || | || |||| || ||| |
Sbjct 176 GTGTAAAATGCGGGTGCTTGGTTTGAGCTCAAGCTTATGC-TCTGGTGAGGATAAGGAAG 234
Query 171 AAG-AGAG--CAGTGGAGAAGCCGGGCTTACGCCGGTTTATCTCAATGTCTATGATCTAA 227
||| |||| | |||||||| | || ||||| ||||||||||| |||||||||||||
Sbjct 235 AAGAAGAGATTAATGGAGAAGGCTCTCTCACGCCTGTTTATCTCAACGTCTATGATCTAA 294
Query 228 CGCCTGTCAACAATTACCTTTATTGGTTTGGGATTGGCATATTCCATTCTGGAATTGAGG 287
| |||||||||||||| || |||||||| || |||||||||| || ||||| |||||||
Sbjct 295 CTCCTGTCAACAATTATCTCTATTGGTTCGGCCTTGGCATATTTCACTCTGGCATTGAGG 354
Query 288 CTCATAATTTGGAATATTGCTATGGAGCTCACGAGTA-TCCAACAAGTGGGGTATATGAG 346
||||| ||| |||||| | ||||||||||| ||||| || | | |||||||||| ||||
Sbjct 355 CTCATGGTTTCGAATATGGATATGGAGCTCATGAGTATTCGAGC-AGTGGGGTATTTGAG 413
Query 347 GTGGAACCTAGGAGCTGTCCAGGTTTCATCTTTAGACGGTCGGTTTTATTGGGAACTACC 406
|| |||||||||||||||||||||||||||||||| || || ||||| |||||||| |||
Sbjct 414 GTTGAACCTAGGAGCTGTCCAGGTTTCATCTTTAGGCGCTCAGTTTTGTTGGGAACCACC 473
Query 407 AGCATGTCTCGTTCAGATTTCCGCTCATACATGGAGAAGCTTTCAAGAAAATACCATGGT 466
||||||||||| || ||||||||||| | ||||||||||||||| ||||| || |||||
Sbjct 474 AGCATGTCTCGCTCTGATTTCCGCTCCTTCATGGAGAAGCTTTCGAGAAAGTATCATGGG 533
Query 467 GACACTTACCATTTGATTGCCAAGAACTGTAACCATTTTACTGAAGAAGTATGCTTGCAG 526
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 534 GACACATACCATTTGATTGCCAAAAACTGTAACCATTTCACTGAAGAAGTATGCTTGCAG 593
Query 527 CTTACAGGAAAGCCTATTCCAGGATGGATTAATCGGCTAGCCCGTGTAGGTTCGTTCTGT 586
| ||||||||||||||||| |||||||||||| || | || || || ||||||||||||
Sbjct 594 GTAACAGGAAAGCCTATTCCTGGATGGATTAATAGGATGGCTCGAGTTGGTTCGTTCTGT 653
Query 587 AATTGTCTTCTGCCAGAAAGCATTCAGCT-TACAGCTGTTAGTGTTCTTCCCGAACGCCT 645
|| ||| | || ||||||||||| ||||| | || | |||| | | ||| ||| |||
Sbjct 654 AACTGTATCCTTCCAGAAAGCATACAGCTCT-CATCGGTTAAT---CATCCTGAA-GCCC 708
Query 646 T-GAATTCTCCGATGAG---GA-GGAATCA-AAC--TCAGAGGCATCTTCTGTGTC---- 693
| || ||||| ||||| || ||| ||| || |||| ||||||||||||||
Sbjct 709 TCGAGTTCTCTGATGATAACGATGGA-TCAGAAGAATCAGTTGCATCTTCTGTGTCATAC 767
Query 694 G-----GATGAAGAAGGATCAGAGCAGCATCTCATAA-ATGCAGCAGACAGAGAGATTGT 747
| |||| ||||||||| || || |||||||||| | ||| || |||| || ||||
Sbjct 768 GAAACAGATGGAGAAGGATCGGATCATCATCTCATAACA-GCACCAAACAGCGATATTGC 826
Query 748 GTATCTACAAAACAAACCAGTGCGACTT 775
||||||||| ||| ||||||| |||||
Sbjct 827 GTATCTACAGGACAGACCAGTGAGACTT 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49932742118
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5