BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493130
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17480.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1716 0.0
AT4G17470.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 619 2e-176
> AT4G17480.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:9745006-9746966 REVERSE LENGTH=1341
Length=1341
Score = 1716 bits (929), Expect = 0.0
Identities = 1070/1136 (94%), Gaps = 17/1136 (1%)
Strand=Plus/Plus
Query 1 ATCAAACGTAAACTTATTGCTTTCTTGCTTCTTGTGGTTCCCCAAAACTCAAAATACTCT 60
|||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||
Sbjct 1 ATCAAACGTAAACTTATTGCTTTCTTCCTTCTGGTAGTTCCCCAAAACTCAAAGTACTCT 60
Query 61 TTTTGTGTGTAAAC-----AAAAATAAACGGTACTC-TT-TCTTCCAAG-TG-T-TACCA 110
|||| ||||||||| |||||| |||||||||| || ||||| ||| || | | |||
Sbjct 61 TTTTCTGTGTAAACAAAAAAAAAATCAACGGTACTCTTTCTCTTCTAAGTTGTTGTTCCA 120
Query 111 TGGAGAAGAGTTTCCTA-AGATCTA-CTCTCCTTGTGACATTGACTATCTTCTTCTTCCT 168
||||||||||||||| | | ||| | ||||||||||||| |||||| ||||||||||| |
Sbjct 121 TGGAGAAGAGTTTCC-AGAAATC-AGCTCTCCTTGTGACCTTGACTCTCTTCTTCTTCAT 178
Query 169 TCCAGTTTCAATCTCGGTTCCATTCATTCTCTTTCATGGGATTAGAGATCAATGCTCAAA 228
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 179 TCCAGTTTCAATCTCGGTTCCATTCATTCTGTTTCATGGGATTAGAGATCAATGCTCCAA 238
Query 229 TGGTGGAGTGAGAAGCTTCGTACAGCTCCTTAGCAACCTCTCTAGCTCCCCTGGATCTTG 288
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 239 TGGTGGAGTGAGCAGCTTCGTACAGCTCCTTAGCAACCTCTCTAGCTCCCATGGATCTTG 298
Query 289 CTTAGAAATAGGAGATGGAGAGCAAGATTCGGTGACTATGCCGCTTACGCAACAAGCGAG 348
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTTAGAAATAGGAAATGGAGAGCAAGATTCGGTGACTATGCCGCTTACGCAACAAGCGAG 358
Query 349 TGTAGCGTGTGAGAAAGTTAAAAAGATGAAAGAGTTGAGTCAAGGCTACAACATTGTCGC 408
|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| ||
Sbjct 359 TGTAGCGTGTGAGAAAGTTAAACAGATGAAGGATTTGAGTCAAGGCTACAACATTGTTGC 418
Query 409 ACAGTCTCAAGGAAACTTGGTAGCTAGAGGTCTAATCGAGTTTTGCGACAATGCTCCTCC 468
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 419 ACAGTCTCAAGGAAACTTGGTAGCTAGAGGTCTAATCGAGTTTTGTGACAATGCTCCTCC 478
Query 469 GGTCTTCAACTATATATCTTTAGAAGGTCCTCACGCTGGCATATCCGACATTCCCAAGTG 528
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 479 GGTCTTCAACTATATATCTTTAGGAGGTCCTCATGCTGGCATATCCGACATTCCCAAGTG 538
Query 529 TAATTCTACACTTTGCGAGTTGCTGAAAACAGAGGTCTACACCGACTTCGTACAGGATCA 588
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 539 TAATTCTACACTTTGCGAGTTGCTGAAAACAGCGGTCTACACCGACTTCGTACAAGATCA 598
Query 589 TATTGCTCCAAGTGGTTATATCAAGATCCCTACCGATATAAAAAATTACCTGGAACACTC 648
||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||
Sbjct 599 TATTGCTCCAAGTGGTTATATCAAGATTCCTACAGATATAAAAGATTACCTGGAACACTC 658
Query 649 CAAGTATCTGCCACAGCTCAACAACGAGAGACCTAAAGAAAGGAACGCCACTTTTAAAGA 708
||||||||||||| || ||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 659 CAAGTATCTGCCAAAGATCAACAACGAGAGACCTAACGAAAGGAACACCACTTTTAAAGA 718
Query 709 CCGGTTCACTAGCTTGCACAACTTGGTCCTTGTCATGTTTGAGGGTGATACAGTAGTGAT 768
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 719 CCGGTTCACTAGCTTGCACAACTTGGTCCTTGTCATGTTTGAGGGTGATGCAGTAGTGAT 778
Query 769 TCCTAAAGAAAGTTCTTGGTTCGGATATTACCCGGATGGAGCTTCCACACCTCTTTTGTC 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCCTAAAGAAAGTTCTTGGTTCGGATATTACCCGGATGGAGCTTCCACACCTCTTTTGTC 838
Query 829 TCCTCAACAGACAAAGCTCTATACTGAGGATTGGATTGGTCTGAAAACCTTGAATACTGC 888
|||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||
Sbjct 839 TCCTCAACAGACAAAGCTCTATACTGAGGATTGGATTGGTCTGAAAACATTGGATGCTGC 898
Query 889 CGGAAAAGTTAAGTTTGTCAGTGTCCATGGCGAGCACCTAAGAATAGCGCAAGACGATGT 948
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 899 CAGAAAAGTTAAGTTTGTCAGTGTCCCTGGCGAGCACCTAAGAATAGCGCAAGACGACGT 958
Query 949 TGTAAAATACGTCGCGCCTTACCTCAAGAACCAGCCTGTGTCTATGAGTGAAGATTTGGA 1008
||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 959 TGTAAAACACGTCGTGCCTTACCTCAAGAACCAGCCTGCGTCTATGAGTGAAGATTTGGA 1018
Query 1009 GATACTGCATCTATGAGTGAAAGACTTCATTGTTATGCTCTCTTAGGATTAAATT-AAAA 1067
|||||||||||||||| ||| |||||||||||||||||||||||| || ||||| ||||
Sbjct 1019 GATACTGCATCTATGATTGA--GACTTCATTGTTATGCTCTCTTAGAATCAAATTTAAAA 1076
Query 1068 GTGAAGAACTTTAGAGGCTACTTCTTCTTAATCATAAATCAAAATAATTTCATCAT 1123
||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||
Sbjct 1077 GTGAAGAACTTTAGAGGCTCCTTTTTCTTAATCATAAATCCAAATAATTTCATCAT 1132
> AT4G17470.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:9742759-9744860 REVERSE LENGTH=1181
Length=1181
Score = 619 bits (335), Expect = 2e-176
Identities = 724/906 (80%), Gaps = 49/906 (5%)
Strand=Plus/Plus
Query 108 CCATGGAGAAGAGTTTCCTAAGATCTACTCTCCTTGTGACATTGACTATCTTCTTC-T-T 165
|||||||||||||||||| ||| ||| ||||||||||||| ||| || |||||||| | |
Sbjct 90 CCATGGAGAAGAGTTTCCAAAGGTCTGCTCTCCTTGTGACTTTGTCTCTCTTCTTCTTCT 149
Query 166 CC-TTCCAGTTTCAATCTCGGTTCCATTCATTCTCTTTCATGGGATTAGAGATCAATGCT 224
|| |||| |||||| |||| ||||||||| |||| ||||| ||| || ||| | ||||||
Sbjct 150 CCATTCCGGTTTCACTCTCTGTTCCATTCGTTCTGTTTCACGGGTTTGGAGGTGAATGCT 209
Query 225 CAAATGGTGGAGTGAG-AAGCTTCGTACAGCTCCTTAGCAACCTCTCTAGCTCCCCTGGA 283
| |||| |||||| || ||| |||| |||| | ||||| ||| ||| |||||||
Sbjct 210 CCAATGACAAAGTGAGCAA-CTTAACACAGTTCCTCATCAACCACTCCGGCTACCCTGGA 268
Query 284 TCTTGCTTAGAAATAGGAGATGGAGAGCAAGATTCGGTGACT-ATGCCGCTTACGCAACA 342
||||| |||||||||||||||||| | ||||||| | | | |||||||||| ||||||
Sbjct 269 ACTTGCGTAGAAATAGGAGATGGAGTGAAAGATTC-CTTATTCATGCCGCTTAGGCAACA 327
Query 343 AGCGAGTGTAGCGTGTGAGAAAGTTAAAAAGATGAAAGAGTTGAGTCAAGGCTACAACAT 402
||| || |||| ||||||||| ||||| ||||| |||| ||||| |||| ||||||||
Sbjct 328 AGCCAGCATAGCTTGTGAGAAAATTAAACAGATGCCAGAGCTGAGTGAAGGTTACAACAT 387
Query 403 TGTCGCACAGTCTCAAGGAAACTTGGTAGCTAGAGGTCTAATCGAGTTTTGCGACAATGC 462
|| ||| ||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 388 AGTGGCAGAGTCTCAAGGAAACTTGGTCGCTAGAGGCCTAATCGAGTTTTGCGATAATGC 447
Query 463 TCCTCCGGTCTTCAACTATATATCTTTAGAAGGTCCTCACGCTGGCATATCCGAC-ATTC 521
||| || ||| |||||||| | || |||| ||| ||||| |||||| | | | | || |
Sbjct 448 TCCACCAGTCATCAACTATGTCTCCTTAGGAGGACCTCATGCTGGCGTCGCTG-CAATCC 506
Query 522 CC-A--AGTGTAATTCTA-CACTTTGCGAGT--TGC-TGAAAAC------AG-AG-G-TC 565
|| | |||| |||| | || ||||| | | | | |||| | | || | |
Sbjct 507 CCGAGGGGTGTGATTC-AGCATTTTGC-A-TACT-CATGAAGGCGTTTTTTGCAGTGATT 562
Query 566 TACACCGACTTCG-TACAGGATCATATTGCTCCAAGTGGTTATATCAAGATCCCTACCGA 624
|||| ||| || | | || ||||||| |||||||||||||||| |||| | |||| ||
Sbjct 563 TACAGCGATTTTGCT-CAAGATCATACTGCTCCAAGTGGTTATGTCAAAAAACCTATGGA 621
Query 625 TATAAAAAATTACCTGGAACACTCCAAGTATCTGCCACAGCTCAACAACGAGAGACCT-- 682
||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 622 AATAAAAAATTATTTGGAACACTCCAAGTATCTGCCAAAGCTAAACAACGAGAGACCTGG 681
Query 683 AAAGAAAGGAACGCCACTTTTAAAGACCGGTTCACTAGCTTGCACAACTTGGTCCTTGTC 742
||||| ||| |||||||||||||||| ||||| |||||||| |||||||| || ||
Sbjct 682 CGAGAAA--AACTCCACTTTTAAAGACCGTTTCACCAGCTTGCAAAACTTGGTTCTCATC 739
Query 743 ATGTTTGAGGGTGATACAGTAGTGATTCCTAA-AGAAAGTTCTTGGTTCGGATATTACCC 801
||||| || ||||||| || || |||| || ||||| |||||||||||||||||||||
Sbjct 740 ATGTTCCAGAATGATACAATATTGGTTCC-AAGAGAAACTTCTTGGTTCGGATATTACCC 798
Query 802 GGATGGAGCTTC--C---A-CACCTCTTTTGTCTCCTCAACAGACAAAGCTCTATACTGA 855
|||||||||||| | | ||||| ||||| |||||||| |||||||||| || |||||
Sbjct 799 GGATGGAGCTTCATCTTCAACACCTGTTTTGCCTCCTCAAAAGACAAAGCTATACACTGA 858
Query 856 GGATTGGATTGGTCTGAAAACCTTGAAT-ACTGCCGGAAAAGTTAAGTTTGTCAGTGTCC 914
||||||||||||||||||||||||| || | ||| |||||||| | |||| | |||||||
Sbjct 859 GGATTGGATTGGTCTGAAAACCTTGGATGA-TGCTGGAAAAGTGAGGTTTATTAGTGTCC 917
Query 915 ATGGCG-AGCACCTAAGAA-TAGCGCAAGACGATGTTGTAAAATACGTCGCGCCTTACCT 972
||||| | ||| | ||| || || |||| || |||| |||||||| | |||||||||
Sbjct 918 CTGGCGGA-CACATC-GAAATAACGGAAGAAGACCTTGTCAAATACGTTGTGCCTTACCT 975
Query 973 CAAGAA 978
| ||||
Sbjct 976 CCAGAA 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55069997865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5