BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493134
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17440.1 | Symbols: | Protein of unknown function (DUF1639)... 1443 0.0
> AT4G17440.1 | Symbols: | Protein of unknown function (DUF1639)
| chr4:9727740-9729263 FORWARD LENGTH=1061
Length=1061
Score = 1443 bits (781), Expect = 0.0
Identities = 901/959 (94%), Gaps = 8/959 (1%)
Strand=Plus/Plus
Query 35 tctctctctcctctctGCTTTTTGCTTTCTAGGGTTTTTGATCATCTCTCAGGTGAATAG 94
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 27 TCTCTCTCTCCTCTCTGCTTTTTACCTTCTAGGGTTTTTGATCATCTCTCAGGTGAATAC 86
Query 95 GTTTCGGTATAATCTCATCCCAATGTCTGCTAATTCCAAGTCGGAGAGGTCTGCTTCTCA 154
|||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 87 GTTTTGGTATAATCTCATACCAATGTCTGCGAATTCCAAGTCGGAGAGGTCTGCTTCTCA 146
Query 155 ATCGGCGGAGACGGTGGCTGTTTCTAACCGTGTCGTGGCGTCACGGTCAAGTCGTCAGCC 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 ATCGGCGGAGACGGTGGCTGTTTCTAACCGTGTCGTGGCGTCACGGTCAAGTCGTCAGCC 206
Query 215 GCGGCTCTCTTTCTCCTCCTTTGCTCCGTCATCAGAGCACGATTACTTGAAGAAGCTGAA 274
||| ||||||||||||||||||||||| ||||||||||||||| || |||||||||||||
Sbjct 207 GCGTCTCTCTTTCTCCTCCTTTGCTCCCTCATCAGAGCACGATAACCTGAAGAAGCTGAA 266
Query 275 ATCCGATGAGATTTCTCC-GACgagagaggaagttccagtgtcggtgaaggagagagaag 333
|||||||||||||||||| | ||||||||||||| || ||||||||||||||||||||||
Sbjct 267 ATCCGATGAGATTTCTCCCG-CGAGAGAGGAAGTGCCGGTGTCGGTGAAGGAGAGAGAAG 325
Query 334 aaacggaggaggaggaagcgaagaggacttggaatctaaggccgaggaaggCTTTTGGTG 393
|||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||
Sbjct 326 AAACGGAGGAGGAGGAAGCGAAGAGGACGTGGAATCTTCGTCCGAGGAAGGCTTATGGTG 385
Query 394 GTTTGAAGAAAGGAAACGGCGTATTCGCGACGGAGGTGTGCGGTGGCGGAGGAGGAGGAG 453
||| |||||||||||||||||| ||| || ||||||| ||||||||||| ||||||||||
Sbjct 386 GTTCGAAGAAAGGAAACGGCGTGTTCACGGCGGAGGTTTGCGGTGGCGGCGGAGGAGGAG 445
Query 454 TAGGTTCGGAGGTGAAGAATCAGAAATCAAGCGGAGGAATAGAGCCGAAATCGAACAGGC 513
| ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||
Sbjct 446 --G-TTCGGAGGTGAAGAATCAGAAATCAGGCGCAGGAATTGAGCCGAAATCGAACAGGC 502
Query 514 AGAGAGGAATACCGGCGGAATCTCCTGGATTAGGCGGTGGTGAGGTTGCGAACGAGAATC 573
|||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 503 AGAGAGGAATCCCGGCGGAATCACCCGGATTAGGCGGTGGTGAGGTTGCAAACGAGAATC 562
Query 574 GCAGGCTTTGGGTTGCTCTTTCTCGAGACGAGATCGAAGAAGATTTGTTTAGCATGAGTG 633
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 563 ATAGGCTTTGGGTTGCTCTAGCTCGAGACGAGATCGAAGAAGATTTGTTCAGCATGAGTG 622
Query 634 GGAACAGGCCATCTCGCCGGCCAAGAAAGAGGGCAAAAGCTTTGCAGAAATATCTCGATG 693
|||||||| |||||||||||||||| ||||||||||||||| |||||||| |||||||||
Sbjct 623 GGAACAGGTCATCTCGCCGGCCAAGGAAGAGGGCAAAAGCTATGCAGAAACATCTCGATG 682
Query 694 TCATTTTCCCTGGATTGTGTCTCGTTGGGATGAATGCTGATTGCTTCAGAGTATCCACTT 753
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 683 TCATTTTCCCTGGATTGGGTCTCGTTGGGATGAATGCTGATTGCTTCAGAGTAGCCACTT 742
Query 754 CTCCGGCTAAGTGATGATCGATGCAAAGGAGTCTTTTGGTGAAGGAAAAAGATAGGTATG 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 CTCCGGCTAAGTGATGATCGATGCAAAGGAGTCTTTTGGTGAAGGAAAAAGATAGGTATG 802
Query 814 CTGGTGATCAAGAATCCAGATACACCACAGTAGAAGATAGGAAGGAGATATATCAAGAGA 873
||||||||| |||||||||||||| ||||||||||| ||||||| |||||| ||||||||
Sbjct 803 CTGGTGATCGAGAATCCAGATACATCACAGTAGAAGCTAGGAAGAAGATATCTCAAGAGA 862
Query 874 CATGTTCTTGTCTCATATCAAACTTAGTAGTAACTAAATTATAAGTAAATATCGGTAAGT 933
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 863 CATGTTCTTGTCTCATATCAAACTTAGTAGTAACTAAACTATAAGTAAATATCGGTAAGG 922
Query 934 TCATATAATTATAGATATATA-AA-GAAAAGAGAGCCAGAGGGGTTTGTTTTTGAGTTA 990
||||||||||||||||||||| || || | |||||| ||||||||||||||||||||||
Sbjct 923 TCATATAATTATAGATATATATAAAGAGA-GAGAGCGAGAGGGGTTTGTTTTTGAGTTA 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5