BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493135
Length=1843
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17430.1 | Symbols: | O-fucosyltransferase family protein |... 2636 0.0
> AT4G17430.1 | Symbols: | O-fucosyltransferase family protein
| chr4:9724840-9726828 REVERSE LENGTH=1912
Length=1912
Score = 2636 bits (1427), Expect = 0.0
Identities = 1675/1792 (93%), Gaps = 27/1792 (2%)
Strand=Plus/Plus
Query 1 GCAAAAAACATGAACAACTTCTTCAATCCCAGTAGACCAAGCCCGCGTCCATGGCCGAAC 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 19 GCAAAAAACATGAACAACTTCTTCAATCCCAGTAGACCAAGCCCACGTCCATGGCCAAAC 78
Query 61 AGGAAGAAGCAAACCAACAAATCTGCCAT-TTTCATTTGCTCCGTTTCTCTACTTGTTGT 119
||||||||||||||| |||||||||| || |||| |||||||||||||| ||||||||||
Sbjct 79 AGGAAGAAGCAAACCGACAAATCTGCGATATTTC-TTTGCTCCGTTTCTATACTTGTTGT 137
Query 120 TTTCTTCGTCGTCGTCTTCTTCTTCATCACTTACTCCGAGATGCCTAAGTCCCTGTTCTC 179
|||||| |||||| |||||||||||||||||||||||||||| |||||| |||||||
Sbjct 138 GTTCTTCATCGTCG---TCTTCTTCATCACTTACTCCGAGATGCCCAAGTCCTTGTTCTC 194
Query 180 AATCTCTGCCTTTTCTGGATCCGTTCAATTCCCTCAGTGCAGATCCGAGATACTAACCCG 239
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 AATCTCTGCATTTTCTGGATCCGTTCAATTCCCTCAGTGCAGATCCGAGATACTAACCCG 254
Query 240 AACTCTTCTAGGTCAGAAGTTCCTCTGGTACGCTCCTCACAGTGGATTCAGTAATCAGCT 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 255 AACTCTTCTAGGTCAGAAGTTTCTCTGGTACGCTCCTCACAGTGGATTCAGTAATCAGCT 314
Query 300 ATCGGAGTTTAAGAATGCGGTT-TTAATGGCTGGAATTCTTAATCGGACCCTAATTATTC 358
|||||| |||||||||||| || || ||||| ||||||||||||||||||||||||||||
Sbjct 315 ATCGGAATTTAAGAATGCGCTTCTT-ATGGCGGGAATTCTTAATCGGACCCTAATTATTC 373
Query 359 CTCCGATTCTGGATCATCACGCCGTCGCTCTCGGTAGCTGTCCTAAATTTAGGGTTTTGA 418
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 374 CTCCGATTCTGGATCATCACGCCGTTGCTCTCGGTAGTTGTCCTAAATTTAGGGTTTTGA 433
Query 419 GCCCCAGCGAGATACGAATCTCAGTTTGGAATCATTCAATTGAGCTTCTTAGGACTGACA 478
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 434 GTCCCAGCGAGATACGAATCTCAGTTTGGAATCATTCAATTGAGCTTCTTAAGACTGACA 493
Query 479 GGTACGTTTCGATGGCTGATATTGTAGACATTTCGTCTCTGGTATCTTCTTCGGCTGTTC 538
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 494 GGTACGTTTCGATGGCTGATATTGTAGACATTTCGTCGCTGGTATCTTCTTCGGCTGTTC 553
Query 539 GAGTCATTGATTTTAGGTACTTTGCATCACTACTGTGTGGTGTTGACTTGGAGACTCTAT 598
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 554 GAGTCATTGATTTTAGGTACTTTGCATCACTACAGTGTGGTGTTGACTTGGAGACTCTAT 613
Query 599 GCTCTGATGATTTAGCTGAACAGTCTCAGGCTTATGAATCACTGAAACAGTGTGGCTATT 658
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 614 GCACTGATGATTTAGCTGAACAGTCTCAGGCTTATGAGTCACTGAAACAGTGTGGCTATT 673
Query 659 TGTTATCTGGAGTTCGTGGCAATGTGGATAAATGTTTGTATGCTGTGGATGAAGATTGTA 718
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 674 TGTTATCTGGAGTTCGTGGTAATGTAGATAAATGTTTGTATGCTGTGGATGAAGATTGTA 733
Query 719 GAACCACAGTTTGGACTTATAAAAACGGAGATGCTGATGGAAGATTAGATTCGTTCCAGC 778
||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 734 GAACCACTGTTTGGACTTATAAAAATGGAGAAGCTGATGGGAGATTAGATTCGTTCCAGC 793
Query 779 CTGATGAGAAGCTTAAGAAGAAGAAGAAATTGTCCTATGTGAGAAGGCGTAGAGATTTGT 838
||||||||||||| |||||||| |||||||||||| | ||||||||||| |||||| |||
Sbjct 794 CTGATGAGAAGCTCAAGAAGAAAAAGAAATTGTCCAACGTGAGAAGGCGAAGAGATGTGT 853
Query 839 ATAAGACTCTTGGACATGGTACAGAAGCCGAGTCTGCAGCTATTCTAGCATTTGGGAGCC 898
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 854 ATAAGACTCTTGGACATGGTACAGAAGCTGAGTCTGCAGCTATTCTAGCATTTGGGAGCC 913
Query 899 TCTTCACAGCTCCATACAAAGGCTCAGAACTGTATATCGATATACATAAATCTCCAAAGA 958
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 914 TCTTCACAGCTCCATACAAAGGCTCAGAGCTGTATATCGATATCCATAAATCTCCAAAGA 973
Query 959 TAAAACCTTTGGTTGAGAAGGTTGATTTCCTTCCTTTTGTTCGAGAGATAATGAGGGCGG 1018
||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 974 TAAAATCTTTGGTTGAGAAGGTCGATTTCCTTCCTTTTGTTCGAGAGATAATGATCGCGG 1033
Query 1019 GCAAGAAATTTGCCTCGGAAACCATAAAGGCACCGTTTCTTTGTGCACAGCTTAGATTAC 1078
| ||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1034 GAAAGAAATTTGCTTCAGAAACCATAAAGGCGCCGTTTCTTTGTGCACAACTTAGATTAC 1093
Query 1079 TAGATGGCCAGTTCAAGAATCATCGGGAGAGCACGTTTATGGGTTTATACCAGAAGTTGG 1138
|||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct 1094 TAGATGGCCAGTTCAAGAATCATCGGGAGAGCACTTTTACGGGTTTATATCAGAAGTTGG 1153
Query 1139 AATCTTTGAGGGTAAAGAATCCTGGTCTAATTAATGTGTTTGTAATGACAGACCTTCCTG 1198
|| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 AAGCTTTGAGCGTTAAGAATCCTGGTCTAATTAATGTGTTTGTAATGACAGACCTTCCTG 1213
Query 1199 AAAGTAACTGGAACGGAACTTACTTGGGTGATTTGTCTAAGAACTCTACAAATTTCAAGC 1258
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 AATTTAACTGGACCGGAACTTACTTGGGTGATTTGTCTAAGAACTCTACAAATTTCAAGC 1273
Query 1259 TTCACTTTATAGGGGAACAAGATGAATTCTTAGTGCGAACAGAGCATGAGCTTGCTTCTG 1318
| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| |
Sbjct 1274 TCCACTTTATAGGGGAACAAGATGAATTCTTAGCGCGAACAGAGCATGAACTTGATTCAG 1333
Query 1319 CGGGTCACGGCCAGAAATTTGGGTCTATTCCGATGAGTCTGGATAATATAAAAAAGATGC 1378
|| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1334 CGAGTCACGGCCAGAAATTTGGGTCTATTCCGATGAGTCTTGATAGTATAAAAAAGATGC 1393
Query 1379 AGAACCATTGTT-CTCCTCATGGAGGATCCAATGTGCAGCTTTACATAGAGGAAGCTGTT 1437
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 AGACCCATTGTTAC-CCTCATGGAGGATCCAATGTGCAGCTTTACATAGAGGAAGCTGTT 1452
Query 1438 TGCAGCTGTGCGTCATTGGGTTTTGTTGGTACTGCAGGGTCTACAATAGCTGATAGTGTA 1497
|| |||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1453 TGTAGCTGTGCTTCACTGGGTTTTGTTGGTACTCCAGGGTCTACAATAGCTGATAGTGTA 1512
Query 1498 GAGATGATGAGGAAATACAATGCGTGTAGTAGTAGTTGAACTCAGACTTGCATTTCTATT 1557
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1513 GAGATGATGAGGAAATACAATGCGTGTAGTAGTAGTTGAACTCAGACT-GCATTTCTATT 1571
Query 1558 GTATTCATCTACTGGATGAGCCAATGCGGAGTG----------GTT--GCCGGTCTTTGT 1605
| |||||||| |||||||||||||| | |||| ||| ||||||||||||
Sbjct 1572 GGATTCATCTGGTGGATGAGCCAATGTGTAGTGATTTTATTAAGTTTTGCCGGTCTTTGT 1631
Query 1606 ATAGAGATGGGTAGAGATAGATCTTTCATCTGTC-TCCACTCTCCACTTGAGGT-ATTGG 1663
|||||||||| ||||||||||| | ||||||| || ||||||||||| || |||||
Sbjct 1632 ATAGAGATGGATAGAGATAGATGATAGATCTGTCATCTG-TCTCCACTTGAAGTTATTGG 1690
Query 1664 TGGTGAAAACAGGCTTTTGGGTTGTTTTGTGTTGTTAAGTTATTTGGGAAACTATCTTAG 1723
|| |||||||||||| || |||||||||||||||||||||||||||||||||||| ||
Sbjct 1691 TGATGAAAACAGGCTCTTAAATTGTTTTGTGTTGTTAAGTTATTTGGGAAACTATCTAAG 1750
Query 1724 TTTCTTATTAATAGAATTAAAGCTACTTGGTTCCTTTCTGGTAATTCACACA 1775
||||||||||||||| | || ||||||||||||||||||| | |||||||||
Sbjct 1751 TTTCTTATTAATAGA-TGAA-GCTACTTGGTTCCTTTCTGATTATTCACACA 1800
Score = 110 bits (59), Expect = 7e-23
Identities = 66/69 (96%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 1775 AGGTTTTGTGAGTTTTGTAGATGTCCTCTTGTGGTCGACAAGATTTGTAATTGTTGTACC 1834
|||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1845 AGGTTTTGTGAGTTCTGTAGATGT-CTCTAGTGGTCGACAAGATTTGTAATTGTTGTACC 1903
Query 1835 AATGTCTTT 1843
|||||||||
Sbjct 1904 AATGTCTTT 1912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91214390265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5