BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493136
Length=1007
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17420.1 | Symbols: | Tryptophan RNA-binding attenuator pro... 1441 0.0
> AT4G17420.1 | Symbols: | Tryptophan RNA-binding attenuator protein-like
| chr4:9722356-9724640 REVERSE LENGTH=1243
Length=1243
Score = 1441 bits (780), Expect = 0.0
Identities = 844/875 (96%), Gaps = 4/875 (0%)
Strand=Plus/Plus
Query 135 GGTTATCACCGCCATGGCTGCTCCGTTTTTCTCTACTCCATTTCAGCCTTATGTCTATCA 194
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 GGTTTTCACCGCCATGGCTGCTCCGTTTTTCTCTACTCCATTTCAGCCTTATGTCTATCA 244
Query 195 GAGTCAAGAAGATACGATCACACCTTTCCAAATTTTGGGTGGTGAAGCACAGGTTGTTCA 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 GAGTCAAGAAGATACGATCACACCTTTCCAAATTTTGGGTGGTGAAGCACAGGTTGTTCA 304
Query 255 GATAATGTTAAAACCACAGGAGAAGGTCATTGCTAAGCCTGGTTCAATGTGCTACATGTC 314
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 305 GATAATGTTAAAACCACAAGAGAAGGTCATTGCTAAGCCTGGTTCAATGTGCTACATGTC 364
Query 315 TGGCTCCATTGAGATGGATAATACTTATACCCCTGAACAAGAAGTTGGAGTTGTACAATG 374
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TGGGTCCATTGAGATGGATAATACTTATACCCCTGAACAAGAAGTTGGAGTTGTACAATG 424
Query 375 GATTTTAGGAAAGAGTGTTAGCAGTATTGTTCTTCGCAACACCGGGCAGAACGATGGATT 434
||||||||||||||||||||| ||||| |||||||| ||||| ||||| |||||||||||
Sbjct 425 GATTTTAGGAAAGAGTGTTAGTAGTATAGTTCTTCGTAACACTGGGCAAAACGATGGATT 484
Query 435 TGTTGGTATCGCTGCACCTTCTTTGGCAAGGATTCTCCCACTTGATTTGGCAATGTTTGG 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TGTTGGTATCGCTGCACCTTCTTTGGCAAGGATTCTCCCACTTGATTTGGCAATGTTTGG 544
Query 495 TGGGGACATCTTATGCCAGCCAGATGCATTTCTTTGCTCTGTCCATGATGTGAAGGTCGT 554
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 545 TGGGGACATCTTATGCCAGCCAGATGCATTTCTCTGTTCTGTCCATGATGTGAAGGTCGT 604
Query 555 AAACTCTATTTACCAGAGACATCGAGCAAGAAACATTGCT-CAAGCTGGGGCTGAGGGGT 613
|||| || | || ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 605 AAACACTGTGTATCAGAGACATCGAGCAAGAAACATTGCTGCA-GCTGGGGCTGAGGGGG 663
Query 614 TTCTGAGACAAAGGCTATCTGGGCAGGGTCTTGCTTTTATTATCGCTGGTGGCTCTGTTG 673
|||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 664 TTCTGAGACAAAGGCTTTCTGGTCAGGGTCTTGCTTTTATTATCGCTGGCGGCTCTGTTG 723
Query 674 TACAGAAAAACCTGGAGGTGGGAGAAGTTCTCACCATTGACGTTTCTTGCATTGCCGCTC 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TACAGAAAAACCTGGAGGTGGGAGAAGTTCTCACCATTGACGTTTCTTGCATTGCCGCTC 783
Query 734 TCACTCCCTCGATCAACTTCCAAATCAAATACAATGCTGCACCTGTAAGACGAGCAGTCT 793
||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 784 TCACTCCGTCGATCAATTTCCAAATCAAATACAATGCTGCTCCTGTAAGACGGGCAGT-T 842
Query 794 TT-GGGGGTGATAACGTAGTAACAGCGACTCTAACGGGACCAGGCATCGTGTTCATCCAA 852
|| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 843 TTCGGGGGTGATAATGTAGTAACAGCAACTCTAACGGGACCAGGCATCGTGTTCATCCAA 902
Query 853 AGTTTACCGTTCCATCGACTCTCGCAGCGAATTGCAAGGTCGGTGACGTCCCCAAATATG 912
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 AGTTTACCGTTTCATCGACTCTCGCAGCGAATTGCAAGGTCGGTGACGTCCCCAAATATG 962
Query 913 AGAGAAAATCCAAGATTATTAGTTCAAATAGGATTATTCATATTTCTTGCATACGTTGTA 972
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 963 AGAGAAAATCCAAGATTATTAGTTCAAATAGGGTTATTCATATTTCTTGCATACGTTGTA 1022
Query 973 ATTGTGTCATCTTTAATCCTTACTGAAATGTGAAA 1007
|||||||| ||||||||||||||||||||||||||
Sbjct 1023 ATTGTGTCCTCTTTAATCCTTACTGAAATGTGAAA 1057
Score = 93.5 bits (50), Expect = 4e-18
Identities = 50/50 (100%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 1 GGGTTCCCGTCGGTGACATCCACCGCGAACATTTCGACCGGAGTTTTGAG 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGGTTCCCGTCGGTGACATCCACCGCGAACATTTCGACCGGAGTTTTGAG 50
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49329932354
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5