BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493140
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17370.1 | Symbols: | Oxidoreductase family protein | chr4:... 2037 0.0
> AT4G17370.1 | Symbols: | Oxidoreductase family protein | chr4:9706058-9708261
FORWARD LENGTH=1356
Length=1356
Score = 2037 bits (1103), Expect = 0.0
Identities = 1257/1327 (95%), Gaps = 27/1327 (2%)
Strand=Plus/Plus
Query 1 CGTACAATATTTGAGATAGGCCCCATCGTCGTCGTTTAGCCCAAAGCAATAAGGGATAAA 60
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |
Sbjct 50 CGTACAATATTTGAGATAGGCCCCATCGACGTCGTTTAGCTCAAAGCAAGAAGGG----A 105
Query 61 GAGAGTCAGAATCAGAGAGAGCTCAGACGTTCTTTAATGGCGGATGCTATGGACTCAGCG 120
||||| ||| || ||| || | ||| ||||||||||||| || |||||||| |
Sbjct 106 GAGAG--AGAGTC------AGC-GAG-C-TTCGTTAATGGCGGATGTTAAGGACTCAGTG 154
Query 121 TTTACCAAGTACGGAATCGTAGGGATTGGTATGATGGGAAGAGAACATCTCATCAATCTT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 ATTACCAAGTACGGAATCGTAGGGATTGGTATGATGGGAAGAGAACATCTCATCAATCTT 214
Query 181 CACCATCTCCGAGACCAAGGCCTCGCTGTCGTTTGCATCGCCGATCCTCACCCTCCCTCA 240
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 215 CACCATCTCCGTGACCAAGGCCTCGCCGTCGTTTGCATCGCCGATCCTCACCCTCCTTCA 274
Query 241 CAGCTTCTGGCCATTGAACTCGCTCAATCTTTTGGATGGGAGCTTAAGGTTTTCTCAGGA 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 CAGCTCCTGGCCATTGAACTCGCTCAATCTTTTGGATGGGAGCTTAAGGTTTTCTCAGGA 334
Query 301 CACGAAGAGTTGCTCAAGAGTGAGCTGTGTGACGTGATTGTTGTGTCTTCTCCAAATATG 360
||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 335 CACGAGGAGTTGCTCAAGAGTGAGCTGTGTGACGTTATTGTTGTCTCTTCTCCAAATATG 394
Query 361 ACTCATCATCAGATTCTTATGGACATTATCAATTATCCAAAACCGCATCATGTTCTTGTT 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 395 ACTCATCATCAGATTCTTATGGACATTATCAATTATTCAAAACCGCATCATGTTCTTGTT 454
Query 421 GAGAAGCCTTTATGCACCACCGTTGCAGATTGCAAACAGGTTTTGGAGGCTGCAAATAAA 480
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 455 GAGAAGCCTTTATGCACCACAGTTGCAGATTGCAAACAGGTTTTGGAGGCTGCAAAGAAA 514
Query 481 AGGTCAGATATGGTGGTGCAAGTTGGGTTGGAGTACAGATACATGCCGCCGGTAGCTAAG 540
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 515 AGGTCAGATATGGTGGTGCAAGTTGGGTTGGAGTACAGATACATGCCGCCAGTTGCTAAG 574
Query 541 TTAATAGAAAAAGTAAAAGGCAGAGATTTTGGTAATGTCAAGATGGTAGCAATCCGAGAA 600
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 575 CTAATAGAACAAGTAAAAGGCAGAGACTTTGGTAATGTCAAGATGGTAGCAATCCGAGAA 634
Query 601 CATAGATTCCCTTTCTTGGTTAAGGTGAACAACTGGAATAGATTCAATGTGAACACTGGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 CATAGATTCCCTTTCTTGGTTAAGGTGAACAACTGGAATAGATTCAATGTGAACACTGGA 694
Query 661 GGGA-CTCTAGTGGAGAAATGCTGCCACTTCTTTGATCTAATGAGGCTCTTTGCCGGTGC 719
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 GGGACCT-TAGTGGAGAAATGCTGCCACTTCTTTGATCTAATGAGGCTCTTTGCCGGTGC 753
Query 720 AAATCCTGTTTGTGTGATGGCTTCTGGAGGCATGGATGTGAACCACAAGGATGAAATTTA 779
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 754 AAATCCTGTCTGTGTGATGGCTTCTGGAGGCATGGATGTGAACCACAAGGATGAAGTTTA 813
Query 780 TGATGGAAAGGTGCCTGATATAATTGATAACGCATATGTTATAATTGAGTTTGACAATGG 839
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 814 TGGTGGAAAGGTGCCTGATATAATTGATAACGCATATGTTATTATTGAGTTTGACAATGG 873
Query 840 ATGTCGTGGGATGCTCGACCTTTGCATGTTTGCTGAGGGAAGCAAAAACGAGCAAGAAAT 899
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 874 ATGTCGTGGGATGCTCGATCTTTGCATGTTTGCTGAAGGAAGCAAAAACGAGCAAGAAAT 933
Query 900 TTCTGTTACTGGTGACATTGGAAAGGGGGAGGCACTTGTTCCAGAGGGTATAGTTCGATC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 TTCTGTTACTGGTGACATTGGAAAGGGGGAGGCACTTGTTCCAGAGGGTATAGTTCGATC 993
Query 960 TGGCAGTCGTGTTGGAGGAAGAGAACACGTTCAAACAATAAAAGCTGAAGATGAAAGAAT 1019
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 994 TGGCAGTCGTATTGGAGGAAGAGAACACGTTCAAACAATAAAAGCAGAAGATGAAAGAAT 1053
Query 1020 AAAATATGAAGGGTTACATCACGGGTCAAGTTACTTGGAACACCTCACCTTCTTATCAGC 1079
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 AAAATATGAAGGGTTGCATCACGGGTCAAGTTACTTGGAACACCTCACCTTCTTATCAGC 1113
Query 1080 AATCAGAGGTGAAGGAAGAGCAGCTATTGATTTGGAAGACGGATTGATGGCTGTTGCCAT 1139
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1114 AATCAGAGGTGAAGGAATAGCAGCTGTTGATTTGGAAGACGGATTGATGGCTGTTGCCAT 1173
Query 1140 GGGAGTTGCTGCACAGCTCTCCATTCAGGAGCGCCGCTATGTAACCATTGACGAGGTCTT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 GGGAGTTGCTGCACAGCTCTCCATTCAGGAGCGCCGCTATGTAACCATTGACGAGGTCTT 1233
Query 1200 GTGATTTGTGACTGGCAGATAGGTAAAGAAACTAAAATACAGCCTTTGTTAATCTGGTAT 1259
|||||||||||||| |||||||||||| ||||||||||| | ||||||| | | | ||
Sbjct 1234 GTGATTTGTGACTGTCAGATAGGTAAATAAACTAAAATAGAACCTTTGT-A-T-T---AT 1287
Query 1260 TATTTCTGTTCTTATGTTTGCCATACAACACTGTTTATTGTAAGAAGGAGAGTGATCATC 1319
|| | |||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1288 TAC--C-GTTCAAATGTTTGCCATACAACACTGTTTATTGTAAGAAG-AGAGTGATCATC 1343
Query 1320 AACTGTT 1326
|||||||
Sbjct 1344 AACTGTT 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65260708500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5